LOCUS       NM_001079701            2228 bp    mRNA    linear   ROD 09-FEB-2025
DEFINITION  Rattus norvegicus cilia and flagella associated protein 206
            (Cfap206), mRNA.
ACCESSION   NM_001079701 XM_001062641 XM_001065205 XM_345515
VERSION     NM_001079701.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2228)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2228)
  AUTHORS   Gibbs,R.A., Weinstock,G.M., Metzker,M.L., Muzny,D.M.,
            Sodergren,E.J., Scherer,S., Scott,G., Steffen,D., Worley,K.C.,
            Burch,P.E., Okwuonu,G., Hines,S., Lewis,L., DeRamo,C., Delgado,O.,
            Dugan-Rocha,S., Miner,G., Morgan,M., Hawes,A., Gill,R., Celera,
            Holt,R.A., Adams,M.D., Amanatides,P.G., Baden-Tillson,H.,
            Barnstead,M., Chin,S., Evans,C.A., Ferriera,S., Fosler,C.,
            Glodek,A., Gu,Z., Jennings,D., Kraft,C.L., Nguyen,T.,
            Pfannkoch,C.M., Sitter,C., Sutton,G.G., Venter,J.C., Woodage,T.,
            Smith,D., Lee,H.M., Gustafson,E., Cahill,P., Kana,A.,
            Doucette-Stamm,L., Weinstock,K., Fechtel,K., Weiss,R.B., Dunn,D.M.,
            Green,E.D., Blakesley,R.W., Bouffard,G.G., De Jong,P.J.,
            Osoegawa,K., Zhu,B., Marra,M., Schein,J., Bosdet,I., Fjell,C.,
            Jones,S., Krzywinski,M., Mathewson,C., Siddiqui,A., Wye,N.,
            McPherson,J., Zhao,S., Fraser,C.M., Shetty,J., Shatsman,S.,
            Geer,K., Chen,Y., Abramzon,S., Nierman,W.C., Havlak,P.H., Chen,R.,
            Durbin,K.J., Simons,R., Ren,Y., Song,X.Z., Li,B., Liu,Y., Qin,X.,
            Cawley,S., Worley,K.C., Cooney,A.J., D'Souza,L.M., Martin,K.,
            Wu,J.Q., Gonzalez-Garay,M.L., Jackson,A.R., Kalafus,K.J.,
            McLeod,M.P., Milosavljevic,A., Virk,D., Volkov,A., Wheeler,D.A.,
            Zhang,Z., Bailey,J.A., Eichler,E.E., Tuzun,E., Birney,E.,
            Mongin,E., Ureta-Vidal,A., Woodwark,C., Zdobnov,E., Bork,P.,
            Suyama,M., Torrents,D., Alexandersson,M., Trask,B.J., Young,J.M.,
            Huang,H., Wang,H., Xing,H., Daniels,S., Gietzen,D., Schmidt,J.,
            Stevens,K., Vitt,U., Wingrove,J., Camara,F., Mar Alba,M.,
            Abril,J.F., Guigo,R., Smit,A., Dubchak,I., Rubin,E.M., Couronne,O.,
            Poliakov,A., Hubner,N., Ganten,D., Goesele,C., Hummel,O.,
            Kreitler,T., Lee,Y.A., Monti,J., Schulz,H., Zimdahl,H.,
            Himmelbauer,H., Lehrach,H., Jacob,H.J., Bromberg,S.,
            Gullings-Handley,J., Jensen-Seaman,M.I., Kwitek,A.E., Lazar,J.,
            Pasko,D., Tonellato,P.J., Twigger,S., Ponting,C.P., Duarte,J.M.,
            Rice,S., Goodstadt,L., Beatson,S.A., Emes,R.D., Winter,E.E.,
            Webber,C., Brandt,P., Nyakatura,G., Adetobi,M., Chiaromonte,F.,
            Elnitski,L., Eswara,P., Hardison,R.C., Hou,M., Kolbe,D., Makova,K.,
            Miller,W., Nekrutenko,A., Riemer,C., Schwartz,S., Taylor,J.,
            Yang,S., Zhang,Y., Lindpaintner,K., Andrews,T.D., Caccamo,M.,
            Clamp,M., Clarke,L., Curwen,V., Durbin,R., Eyras,E., Searle,S.M.,
            Cooper,G.M., Batzoglou,S., Brudno,M., Sidow,A., Stone,E.A.,
            Venter,J.C., Payseur,B.A., Bourque,G., Lopez-Otin,C., Puente,X.S.,
            Chakrabarti,K., Chatterji,S., Dewey,C., Pachter,L., Bray,N.,
            Yap,V.B., Caspi,A., Tesler,G., Pevzner,P.A., Haussler,D.,
            Roskin,K.M., Baertsch,R., Clawson,H., Furey,T.S., Hinrichs,A.S.,
            Karolchik,D., Kent,W.J., Rosenbloom,K.R., Trumbower,H.,
            Weirauch,M., Cooper,D.N., Stenson,P.D., Ma,B., Brent,M.,
            Arumugam,M., Shteynberg,D., Copley,R.R., Taylor,M.S., Riethman,H.,
            Mudunuri,U., Peterson,J., Guyer,M., Felsenfeld,A., Old,S.,
            Mockrin,S. and Collins,F.
  CONSRTM   Rat Genome Sequencing Project Consortium
  TITLE     Genome sequence of the Brown Norway rat yields insights into
            mammalian evolution
  JOURNAL   Nature 428 (6982), 493-521 (2004)
   PUBMED   15057822
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC128759.1.
            
            On or before Dec 10, 2006 this sequence version replaced
            XM_345515.3, XM_001062641.1, XM_001065205.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC128759.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2228
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q21"
     gene            1..2228
                     /gene="Cfap206"
                     /gene_synonym="RGD1310641"
                     /note="cilia and flagella associated protein 206"
                     /db_xref="GeneID:366347"
                     /db_xref="RGD:1310641"
     exon            1..122
                     /gene="Cfap206"
                     /gene_synonym="RGD1310641"
                     /inference="alignment:Splign:2.1.0"
     exon            123..235
                     /gene="Cfap206"
                     /gene_synonym="RGD1310641"
                     /inference="alignment:Splign:2.1.0"
     CDS             128..1996
                     /gene="Cfap206"
                     /gene_synonym="RGD1310641"
                     /note="UPF0704 protein C6orf165 homolog"
                     /codon_start=1
                     /product="cilia- and flagella-associated protein 206"
                     /protein_id="NP_001073169.1"
                     /db_xref="GeneID:366347"
                     /db_xref="RGD:1310641"
                     /translation="MPPTQAESVIKNIIREIGQECAAHGEITSETVVAFMVKAVVLDP
                     SNGFNMDRTLVKTDVQKLVKLCVARLLDNKNPSLDTIKMQVYFDMNYTSREDFLEEHH
                     RVLESRLGIVSREITDTRACAKEELENLYRKIVSYVLLRSGLGSPTDIKIVREATAAL
                     QSVFPQAELCTFLTLSKKDKERQLKELTMIVTGIRLFNRDCGKGGEGIDDLPAILLEA
                     IPATTHHIDSQLQIAQEQAFRYTAIIEKVTNNPLMAKELQPYMLKEALYNVRQYEIFL
                     QTVLSDIITCAEEVELMTKQLAAQLEQLKMTVKSKTAVPTSQVFPIFIALASLWTSFQ
                     DETVLISVLSNLTTNLELFLGTHDLLFPEKVMQGLLDGVIVKTDMTRIEEHLEEKVQL
                     ADFRVLEWLFPETTANFNKLLIQYRGFCGYTFAVTDGLLLPGNPTIGILKYKEKYYTF
                     NSRDAAYSFAENPDHYINLIKEKAKKNAELIQLLELHQQFETLIPYSQMKDVDKHFIK
                     PITKCENGTQTDTHILPPTIVRSYEWNEWELRRKAIQLANLRQKMTHSVQTDLSHMRR
                     DNASQVYPLKEVGTQSKREGSTRVPRPQIFIAGLRGGQSKTTHGVKINLTRAVDET"
     exon            236..319
                     /gene="Cfap206"
                     /gene_synonym="RGD1310641"
                     /inference="alignment:Splign:2.1.0"
     exon            320..410
                     /gene="Cfap206"
                     /gene_synonym="RGD1310641"
                     /inference="alignment:Splign:2.1.0"
     exon            411..599
                     /gene="Cfap206"
                     /gene_synonym="RGD1310641"
                     /inference="alignment:Splign:2.1.0"
     exon            600..758
                     /gene="Cfap206"
                     /gene_synonym="RGD1310641"
                     /inference="alignment:Splign:2.1.0"
     exon            759..967
                     /gene="Cfap206"
                     /gene_synonym="RGD1310641"
                     /inference="alignment:Splign:2.1.0"
     exon            968..1087
                     /gene="Cfap206"
                     /gene_synonym="RGD1310641"
                     /inference="alignment:Splign:2.1.0"
     exon            1088..1286
                     /gene="Cfap206"
                     /gene_synonym="RGD1310641"
                     /inference="alignment:Splign:2.1.0"
     exon            1287..1427
                     /gene="Cfap206"
                     /gene_synonym="RGD1310641"
                     /inference="alignment:Splign:2.1.0"
     exon            1428..1621
                     /gene="Cfap206"
                     /gene_synonym="RGD1310641"
                     /inference="alignment:Splign:2.1.0"
     exon            1622..1765
                     /gene="Cfap206"
                     /gene_synonym="RGD1310641"
                     /inference="alignment:Splign:2.1.0"
     exon            1766..2205
                     /gene="Cfap206"
                     /gene_synonym="RGD1310641"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gagagctgcg gccggctggg ctggcgttcg ggccaagccc agcgcccagg gagctcctgg
       61 ccgttaaacc gcaggtgtac cagcgagaac acggacgtcg gacggctgca gaactagtgc
      121 tgccacaatg cctcccacac aagcagagag tgtcataaag aatatcatac gagaaatagg
      181 acaagaatgt gcagcccatg gagagatcac ttctgaaacg gtggttgctt ttatggtgaa
      241 agctgtcgtc ctagatccca gcaatggctt taacatggat aggaccctcg tcaagactga
      301 cgtgcagaaa cttgttaagc tttgcgtggc acggctattg gacaacaaaa atccatcctt
      361 ggacaccatt aaaatgcagg tctacttcga catgaattac accagtcgag aggactttct
      421 cgaagaacat caccgggtcc tagagtccag gttaggcatt gttagcagag aaatcacgga
      481 caccagagca tgcgctaaag aagagctgga aaatctctac agaaagatcg tcagctacgt
      541 gttactgcgg tctgggcttg gatcccccac agacatcaag attgtcagag aggcaacagc
      601 tgcccttcag agtgttttcc ctcaggccga gctctgcaca tttctgactc ttagtaagaa
      661 ggacaaagaa cgccagttga aagagctcac catgatcgtg actggaattc ggctatttaa
      721 cagagactgt gggaaaggag gagaaggcat tgatgacttg ccagccattc tcctcgaagc
      781 aatcccagcc accacacacc atatcgactc ccagcttcag attgcccaag aacaggcatt
      841 tcgctacacg gccattattg agaaggtaac aaacaacccg ctcatggcca aagaacttca
      901 gccgtacatg ttaaaggaag cgctgtataa tgttcgacag tacgagatct tcctgcagac
      961 tgtcctgtca gatataatca cctgtgctga ggaagtggag ctgatgacaa aacaattggc
     1021 agctcagctg gagcagctga aaatgacagt aaaatccaag acggcggtcc caacgtcaca
     1081 agtcttcccc atcttcattg cgctggccag cctgtggacg agcttccagg atgagacggt
     1141 tcttatcagc gtcctcagca acctgaccac caacctggag ctcttcctgg gcacccatga
     1201 cctcctcttt cccgagaaag tgatgcaagg ccttctcgat ggcgtcatcg tgaaaaccga
     1261 tatgactcgg atagaggagc acttagaaga aaaagtgcag ttggcagatt tcagagtact
     1321 ggagtggctt tttccggaga caacagccaa ttttaacaaa ctgttaattc agtaccgtgg
     1381 attttgcggt tacacgtttg ctgtaactga tggccttctc ctcccaggaa atccaacgat
     1441 tggtattttg aaatataaag aaaaatatta tactttcaac agcagagatg ccgcatattc
     1501 atttgcagaa aatccagacc attacattaa tttgatcaaa gagaaagcca agaagaatgc
     1561 agagttaatt cagctactag agcttcatca gcagtttgaa actctcatac cgtattctca
     1621 gatgaaagat gttgacaagc attttataaa gccaattaca aagtgtgaaa atggcacaca
     1681 gacagacacg cacattttgc cacccacgat cgtgagatca tatgagtgga acgaatggga
     1741 attgagaaga aaagccatac aactggctaa tttgcgccag aaaatgactc actccgtcca
     1801 aactgacctt agtcacatga gaagagataa tgcctcacag gtgtatcctt tgaaagaggt
     1861 tggcacccag tccaagagag aaggcagcac ccgagtgccc agaccccaga ttttcatagc
     1921 tggtcttcgt gggggacaaa gcaaaacaac ccatggggta aagataaact taaccagagc
     1981 cgtggacgaa acctagagat ggactttcat aagaagctgc tccttaatat ggcgtatgag
     2041 gaagagtata aagtactgta catgtgtaaa gttaatttgc ggggtcggca cagtcatcgg
     2101 ttgtgtgaat gtgttctagg gccccatacc ctgcttgcct gtcatacaaa tctaaaagca
     2161 gcttctgtag cacatttttc gttctattaa aattgacaat taaaaaaaaa aaaaaaaaaa
     2221 aaaaaaaa
//
