LOCUS       NM_001399181            1209 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus cilia and flagella associated protein 20
            (Cfap20), transcript variant 1, mRNA.
ACCESSION   NM_001399181 XM_006255083
VERSION     NM_001399181.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1209)
  AUTHORS   Mendes Maia,T., Gogendeau,D., Pennetier,C., Janke,C. and Basto,R.
  TITLE     Bug22 influences cilium morphology and the post-translational
            modification of ciliary microtubules
  JOURNAL   Biol Open 3 (2), 138-151 (2014)
   PUBMED   24414207
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1209)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   3  (bases 1 to 1209)
  AUTHORS   Ishikawa,H., Thompson,J., Yates,J.R. 3rd and Marshall,W.F.
  TITLE     Proteomic analysis of mammalian primary cilia
  JOURNAL   Curr Biol 22 (5), 414-419 (2012)
   PUBMED   22326026
REFERENCE   4  (bases 1 to 1209)
  AUTHORS   Laligne,C., Klotz,C., de Loubresse,N.G., Lemullois,M., Hori,M.,
            Laurent,F.X., Papon,J.F., Louis,B., Cohen,J. and Koll,F.
  TITLE     Bug22p, a conserved centrosomal/ciliary protein also present in
            higher plants, is required for an effective ciliary stroke in
            Paramecium
  JOURNAL   Eukaryot Cell 9 (4), 645-655 (2010)
   PUBMED   20118210
REFERENCE   5  (bases 1 to 1209)
  AUTHORS   Gonzales,P.A., Pisitkun,T., Hoffert,J.D., Tchapyjnikov,D.,
            Star,R.A., Kleta,R., Wang,N.S. and Knepper,M.A.
  TITLE     Large-scale proteomics and phosphoproteomics of urinary exosomes
  JOURNAL   J Am Soc Nephrol 20 (2), 363-379 (2009)
   PUBMED   19056867
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000019.1.
            
            On Jan 4, 2022 this sequence version replaced XM_006255083.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR22582416.316708.1,
                                           SRR26360194.973554.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-310               JAXUCZ010000019.1  9614978-9615287
            311-390             JAXUCZ010000019.1  9624907-9624986
            391-502             JAXUCZ010000019.1  9626151-9626262
            503-691             JAXUCZ010000019.1  9626756-9626944
            692-802             JAXUCZ010000019.1  9627663-9627773
            803-1209            JAXUCZ010000019.1  9628206-9628612
FEATURES             Location/Qualifiers
     source          1..1209
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /map="19p13"
     gene            1..1209
                     /gene="Cfap20"
                     /gene_synonym="Gtl3"
                     /note="cilia and flagella associated protein 20"
                     /db_xref="GeneID:307642"
                     /db_xref="RGD:1308493"
     exon            1..310
                     /gene="Cfap20"
                     /gene_synonym="Gtl3"
                     /inference="alignment:Splign:2.1.0"
     CDS             227..808
                     /gene="Cfap20"
                     /gene_synonym="Gtl3"
                     /note="isoform 1 is encoded by transcript variant 1; gene
                     trap locus 3 protein homolog; UPF0468 protein C16orf80
                     homolog"
                     /codon_start=1
                     /product="cilia- and flagella-associated protein 20
                     isoform 1"
                     /protein_id="NP_001386110.1"
                     /db_xref="GeneID:307642"
                     /db_xref="RGD:1308493"
                     /translation="MFKNTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDNDIQS
                     LVLEIEGTNVSTTYITCPADPKKTLGIKLPFLVMIIKNLKKYFTFEVQVLDDKNVRRR
                     FRASNYQSTTRVKPFICTMPMRLDDGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANC
                     RIRRVYFSDRLYSEDELPAEFKLYLPVQNKAKQ"
     exon            311..390
                     /gene="Cfap20"
                     /gene_synonym="Gtl3"
                     /inference="alignment:Splign:2.1.0"
     exon            391..502
                     /gene="Cfap20"
                     /gene_synonym="Gtl3"
                     /inference="alignment:Splign:2.1.0"
     exon            503..691
                     /gene="Cfap20"
                     /gene_synonym="Gtl3"
                     /inference="alignment:Splign:2.1.0"
     exon            692..802
                     /gene="Cfap20"
                     /gene_synonym="Gtl3"
                     /inference="alignment:Splign:2.1.0"
     exon            803..1209
                     /gene="Cfap20"
                     /gene_synonym="Gtl3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gctccgcctc ctctcaggca ggcttggcgg cgcgggcggc agttgctgtg gtttcggtgc
       61 tgaggtggct gtgtgttcac cgaggcttgc ggatccgccg cttcccgccg tcagtggctg
      121 cagctcagtg tccttccttc ggaccggcgg caccctctct ctttcgccgt tcggttccga
      181 tttccagtcc cgggcctagg gcggctgcgg ggccgcggct ggcgagatgt tcaagaacac
      241 gttccagagc ggcttcctct ccatcctcta cagcatcggc agcaagcccc tgcagatctg
      301 ggacaaaaag gtacggaatg gccacatcaa aagaatcact gacaatgaca tccagtccct
      361 ggtgctagag attgaaggga caaatgtcag caccacatac atcacgtgtc ctgcggaccc
      421 taagaagacg ctggggatta aactgccttt ccttgtcatg atcatcaaaa acttgaagaa
      481 gtattttacc ttcgaagtgc aggtactaga tgacaagaac gtccgtcgga ggtttcgagc
      541 aagtaactac cagagcacca ctcgagtcaa gcccttcatc tgtaccatgc ccatgcggct
      601 ggatgatggc tggaaccaga ttcagttcaa cctatctgac ttcacccggc gggcatatgg
      661 tacaaactac atcgagaccc tgagagtgca gatccatgca aactgtcgta tccgaagggt
      721 ttacttctca gacagactct actcagagga tgagctgcca gcagagttca aactatatct
      781 accagttcag aacaaggcca aacaataact ggacagcagc tgaggggaca gactctggac
      841 gctgagtctt cgtttaaaaa ggaagctaaa atatttaaac aatccactga gctatggctc
      901 actgactact gtgtccttgt cgtggacacc agtgaccatg ccacagttgt gttccttgca
      961 ttctaagttc agtggagaaa agcagagctt tgagtgacac acacgtgctg gggtttcctg
     1021 tgctgcctgc cctggcatgt gagagacaca ctcaacaaac ggaagaatta aagacgtcct
     1081 acaaggcaga ttcagaccaa tatttcttcg tatagtttat ttcttttata tattatctaa
     1141 atatatgtat atgttgtgta atacacataa tctgaaaatg aataaaatgc tatattcttg
     1201 gtttgtaaa
//
