LOCUS       NM_001134694            1514 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus cilia and flagella associated protein 119
            (Cfap119), mRNA.
ACCESSION   NM_001134694 XM_001080060
VERSION     NM_001134694.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1514)
  AUTHORS   Howida,A., Salaheldeen,E. and Iida,H.
  TITLE     Molecular Cloning of Spergen-4, Encoding a Spermatogenic
            Cell-Specific Protein Associated with Sperm Flagella and the
            Acrosome Region in Rat Spermatozoa
  JOURNAL   Zoolog Sci 33 (2), 195-203 (2016)
   PUBMED   27032685
  REMARK    GeneRIF: These data suggest that Spergen-4 integrated into
            elongated spermatids during spermiogenesis serves as a constituent
            for acrosome region and flagella of rat spermatozoa.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC158625.1.
            
            On Sep 23, 2010 this sequence version replaced NM_001134694.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC158625.1, LC063347.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            CDS uses downstream in-frame AUG :: upstream AUG and CDS extension
                                                is not conserved
            RefSeq Select criteria           :: based on conservation,
                                                expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1514              BC158625.1         1-1514
FEATURES             Location/Qualifiers
     source          1..1514
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q37"
     gene            1..1514
                     /gene="Cfap119"
                     /gene_synonym="Ccdc189; Spergen-4"
                     /note="cilia and flagella associated protein 119"
                     /db_xref="GeneID:691909"
                     /db_xref="RGD:1593368"
     exon            1..652
                     /gene="Cfap119"
                     /gene_synonym="Ccdc189; Spergen-4"
                     /inference="alignment:Splign:2.1.0"
     CDS             440..1438
                     /gene="Cfap119"
                     /gene_synonym="Ccdc189; Spergen-4"
                     /note="coiled-coil domain-containing protein 189;
                     coiled-coil domain-containing protein C16orf93 homolog;
                     coiled-coil domain containing 189"
                     /codon_start=1
                     /product="cilia- and flagella-associated protein 119"
                     /protein_id="NP_001128166.2"
                     /db_xref="GeneID:691909"
                     /db_xref="RGD:1593368"
                     /translation="MITPRSSQSLEMKVQTELEHSPKLQEEPDRSPSLVDSSVIRIGT
                     DEQNESPAEATSSPVEVAEDPGANLFPPPLPQPRICMWKYLDIHSMHRLEKAATVEEM
                     REVLAELLELGGPEQSLRDAIILDLFSHALIFCRQQGFSLEQTSAACALLQDLHKACV
                     ATPLGNVEECYRYFTSVLFCHGVRRPPFSIDLFKEEQLLALADYVVNTYFRHFKLYKY
                     VFTPQVRLDLSLSYMGLQSLHLWPEEKEDEEATVEQAATPQEEEPEAVTEAEQQPSEV
                     CILQTYIKCQLNKELRQLQQLVEERLKESEERLSNRLAALERPYQTPPSKGKSKAK"
     exon            653..684
                     /gene="Cfap119"
                     /gene_synonym="Ccdc189; Spergen-4"
                     /inference="alignment:Splign:2.1.0"
     exon            685..750
                     /gene="Cfap119"
                     /gene_synonym="Ccdc189; Spergen-4"
                     /inference="alignment:Splign:2.1.0"
     exon            751..920
                     /gene="Cfap119"
                     /gene_synonym="Ccdc189; Spergen-4"
                     /inference="alignment:Splign:2.1.0"
     exon            921..991
                     /gene="Cfap119"
                     /gene_synonym="Ccdc189; Spergen-4"
                     /inference="alignment:Splign:2.1.0"
     exon            992..1108
                     /gene="Cfap119"
                     /gene_synonym="Ccdc189; Spergen-4"
                     /inference="alignment:Splign:2.1.0"
     exon            1109..1169
                     /gene="Cfap119"
                     /gene_synonym="Ccdc189; Spergen-4"
                     /inference="alignment:Splign:2.1.0"
     exon            1170..1259
                     /gene="Cfap119"
                     /gene_synonym="Ccdc189; Spergen-4"
                     /inference="alignment:Splign:2.1.0"
     exon            1260..1489
                     /gene="Cfap119"
                     /gene_synonym="Ccdc189; Spergen-4"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1456..1461
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cfap119"
                     /gene_synonym="Ccdc189; Spergen-4"
     polyA_site      1489
                     /gene="Cfap119"
                     /gene_synonym="Ccdc189; Spergen-4"
ORIGIN      
        1 accgggttca cgaccccttg gaactccaga tccagaggat ctgtcgccct cttctggcct
       61 ccacggtcac aagcgaacat cctctacaca tgtgcgcaca cgcaggcaca aaaacacaca
      121 aattgtttta aattaaatct tttaaaagac agatctttaa aagcacccct ataagcaact
      181 tcgaagaggc acgtgcaact cgttacgcat gcgctctatc ttttcaatga ttggtgtggg
      241 cttgtacttt ctactttcct taacaacggt caccggggag acaagattag gaagacgccc
      301 tctgcggatt ggctgcctct cgcttcacca cctccgaaga aacacaacaa ggggcaggtc
      361 cgggctttgc agtgggagag ctggctgccc cagagcccag gctggagagc ccttgtctga
      421 ggctaagaag gacgaagaga tgattacccc cagatccagc cagagcctgg aaatgaaggt
      481 gcagacggag ttggaacatt ctcccaaact gcaggaggaa ccggacagga gtcccagctt
      541 ggtggacagc tcagtcataa ggatcggaac agatgagcag aacgagtcgc cagcagaggc
      601 cactagtagc cctgtggagg tggctgaaga tcctggagcc aacttgttcc cgccaccgct
      661 accccagccc cggatctgta tgtggaaata cctggacatc cattctatgc acagactgga
      721 gaaggcagcc accgtggaag agatgagaga ggttcttgct gagctcctgg agcttggtgg
      781 tcctgagcag agcctgcggg atgccattat cttggacctc ttttcccatg cactcatctt
      841 ctgccgtcag cagggctttt cactagagca gacatcagca gcttgtgcct tgctccaaga
      901 tcttcacaag gcctgtgttg ctacacctct gggcaacgtg gaggaatgct accgttactt
      961 taccagcgtt ctcttttgcc atggagtcag gcggccccct ttcagcatcg acctctttaa
     1021 agaggagcag ctgctggcat tggcagacta tgtggtcaac acctacttcc gccacttcaa
     1081 gctctacaaa tacgtcttca ccccacaggt tcgtctcgac ctatctttga gttacatggg
     1141 gctacagtca ctccatctct ggccagagga gaaagaagat gaggaggcaa cagtagagca
     1201 agcagctact ccacaggagg aggagccaga ggccgtgacc gaggcagagc agcagccaag
     1261 cgaggtgtgc atcctccaga cctacatcaa gtgtcagctg aacaaggagc tgaggcagct
     1321 ccagcagctg gtggaggagc ggctcaagga gagtgaagaa aggctgagca acagactggc
     1381 tgcactggaa cggccctatc agacacctcc tagcaaaggc aagagcaagg ccaagtgatc
     1441 ccctgcgttc tcttcaataa agacctgggc cacagtgtcc catctcccca aaaaaaaaaa
     1501 aaaaaaaaaa aaaa
//
