LOCUS       XM_006236885            2748 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus cilia and flagella associated protein
            100 (Cfap100), transcript variant X2, mRNA.
ACCESSION   XM_006236885
VERSION     XM_006236885.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006236885.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006236885.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2748
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2748
                     /gene="Cfap100"
                     /note="cilia and flagella associated protein 100; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 5 ESTs, 5 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 32 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:297444"
                     /db_xref="RGD:1305768"
     CDS             780..2591
                     /gene="Cfap100"
                     /codon_start=1
                     /product="cilia- and flagella-associated protein 100
                     isoform X1"
                     /protein_id="XP_006236947.2"
                     /db_xref="GeneID:297444"
                     /db_xref="RGD:1305768"
                     /translation="MTFKAQSKFSVKIFGDRGSPDFMDNSSSSFIDNRKKDSKKNKGS
                     VTFADSSTNPFHISGDVDFFLLREQERNQAIAEREQKKILRVHQKMTYASKVLAKHTS
                     LRRELQLEDEMEQQQLNAEAEEMNEFRDNNAWKMTVTREKKKEHETLNDYMEKKRSMF
                     LLQYALAMKHNEIQRLEMLATREENRLERAEKFLEKDASLFDEFLRENDRNSVQAMRL
                     AEKETKIKTEKIVEIRELTAQITSIKSEISKFEDTLKHYKIYKDFLYKVSPKEWLDEQ
                     KEKHLALKRAKESTELKSILVGDKGSGIKSKPSSLWKEVHSLKKITKFSRPGKTLSSS
                     TQSLPQVGHPSQHSELDSTLSSSTLPSQDETDSDGEELALYFTEPHQLLDVFTKLEEQ
                     NLSLIQNTQEMEETLDELNVTLKNTQIRMDREVNLLKQWISTMMISISKEEESAAELE
                     LKARVFHFGEYQGDQQDKMLESLNHKVLDVYRNCVGMQQEANLGTVQMLTVVEHQLDE
                     LLENLERVPQIKIEQAEKVKERERRMRLREEKARMQKQLQEERLQRARARAQAKIKKK
                     RGRKLLCRSHPPVIKVKEVHEQTLMDKDKEEMLFFFT"
ORIGIN      
        1 caggagcccc ctctgaactc ttaccctctc cttttttgcc ttggatctat cgcaccaccc
       61 accgggtggc gccagcgacc ttgcgtagcg ccaggagcta agggaagact ttggcacatt
      121 cctagcctgt agaatgttta acctcgtcct cccctgcccc aagaatccta aatattctct
      181 gaggagccag gctgttggct gtgccctagc tgcaacaaaa tccttatggg cgggtaggag
      241 aatctggggg tgagagaagc tagtgagctg ggcgaacata acctgtctcc agtctgcaac
      301 tacccggatc gctctgctcc ttgtccttgt cccttccctg tcttctgctc tttagctgtc
      361 acagtcctgc acaggaccct gcgcccgccc gccagcccgc cctgtgtgcc cgggcccgcc
      421 tccagggctt tatgacatca cagctgctgt gagaatagtt gccttggcat cgcaaacgca
      481 gttcaggacc agaagactcg aaaattgcgg actgaggctt ccgagcgagc tgagtgcacg
      541 cggcggtggc ttgcattctg ggagaaatgt gcaataaaag tcttttaaga agtaactgct
      601 tgacctccta aacaagaaaa tgaagtgtcg ctacatgcat tggagcagga aggtctctca
      661 gagtgacatc tgagtccaga tttaaaggga gaagcccccc accccaactc tccaacctca
      721 cctgggcgag aatctccttc agctaaggcc aagctttgca cacctgttgg tcctcagcca
      781 tgacgttcaa ggcacagtct aagttctctg tgaaaatatt cggagacaga ggtagcccgg
      841 acttcatgga caacagctcc tcttccttca ttgacaacag aaagaaagat tcaaagaaaa
      901 acaaagggag tgtgacgttt gccgacagct caactaaccc tttccacata tcaggggatg
      961 tggacttctt cttgctcaga gagcaggagc ggaatcaagc tattgcagag cgtgaacaaa
     1021 agaagatttt gagggtgcac cagaagatga cctatgcatc caaggtcttg gccaagcaca
     1081 ctagcttgcg ccgggagcta cagctggaag acgagatgga gcagcagcag ctgaatgctg
     1141 aggctgagga gatgaatgag ttccgagata acaatgcttg gaagatgacc gtgacccgag
     1201 aaaagaagaa agagcatgaa acattgaatg actacatgga gaagaagcga agcatgtttc
     1261 tcctccagta tgccctggca atgaagcaca atgaaatcca gcggctggaa atgctggcga
     1321 cccgggaaga gaacaggctg gagagggctg agaagttcct ggagaaggac gcgtccttgt
     1381 ttgacgagtt cctcagggag aatgaccgca actcagtgca ggccatgaga ctggctgaga
     1441 aagagaccaa gatcaagact gagaagatcg ttgagatccg ggaactcaca gctcaaatca
     1501 cgagcatcaa aagcgaaatc tccaaatttg aagacacttt gaaacattac aagatctaca
     1561 aggacttcct gtacaaggtg tcacccaaag agtggctgga tgagcagaaa gagaagcact
     1621 tggctctcaa aagggctaag gagtctacag aattgaagag catcttagta ggggataaag
     1681 ggtctggcat taagagcaaa ccatcctccc tgtggaaaga ggttcacagc ttgaagaaga
     1741 tcacaaagtt ctcacggcct ggaaagactc tgtcatccag cactcagagc ctcccgcagg
     1801 tcggtcatcc tagtcagcac agcgagctgg actccacact gtcaagctcc acgcttccgt
     1861 cacaggacga gactgacagc gatggggagg agctggcact atacttcact gagccccatc
     1921 agctcctaga cgtcttcaca aagctagagg aacagaactt gtcgctgatt cagaacacgc
     1981 aggagatgga ggagacctta gatgaactga atgtcactct gaaaaacacc cagatccgca
     2041 tggacaggga ggtcaacctt ctgaagcagt ggattagtac catgatgata tcaatctcca
     2101 aggaggagga gtcagctgca gaactggagc tcaaagcccg agtcttccac ttcggggagt
     2161 atcagggtga ccagcaggac aagatgttgg agagcctgaa ccacaaggtg ctggatgtgt
     2221 atcggaattg tgtgggtatg cagcaggagg ccaacctggg cacagtacag atgctgactg
     2281 tggtggagca ccagctggat gaactgctgg agaatctgga gcgagtgcct cagatcaaga
     2341 tcgagcaggc tgagaaggtc aaggagaggg aacggcgcat gaggcttcgt gaagagaagg
     2401 ccaggatgca gaagcagttg caggaggaac gtctgcagcg ggctcgagcc agggcccagg
     2461 ctaaaataaa gaagaagaga ggccggaaat tgttatgccg ctcccatcca ccagtcatca
     2521 aggtaaagga ggtgcatgaa cagacactga tggacaagga caaggaggag atgctcttct
     2581 tcttcactta gcagcagagc tggctgaggg ctcagaaaag tcagcagtaa gtgcagacag
     2641 ggactgtaag cctgaggggt tcctaactcc atcccatact ttcctgtcag ccttcttact
     2701 cacaggaaat aaaatcatgt ctcttgggag tctgaatggc ctgctgaa
//
