LOCUS       XM_056985384            5787 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ceramide kinase-like (Cerkl),
            transcript variant X1, mRNA.
ACCESSION   XM_056985384
VERSION     XM_056985384.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_056985384.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5787
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5787
                     /gene="Cerkl"
                     /note="ceramide kinase-like; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 7 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:502640"
                     /db_xref="RGD:1561057"
     CDS             4130..5719
                     /gene="Cerkl"
                     /codon_start=1
                     /product="ceramide kinase-like protein isoform X1"
                     /protein_id="XP_056841364.1"
                     /db_xref="GeneID:502640"
                     /db_xref="RGD:1561057"
                     /translation="MLRRRLGSRVGALEEGAPVGCPELPKAAAEPERVLLRGIFEIGR
                     ESCDVALGERALRWQRIRPELPAGGARCDPLGKEESLDLEDIFSVKLKRRCSAKHPGS
                     GTLLGITLFICLKEQQNKLKDSTLDLINFSEDHCDIWFRQFKRILEGFANRPKALKIL
                     LNPQSHRKESVQVYYEKVEPLLKLAGIKTDVTITEYEGHALSLLDECELRGFDGVVCV
                     GGDGSASEAAHALLLRAQKNAGVEMDSSPTLTGAQLPLGLIPAGSTNVLAHSLFGIPH
                     VVTATMHIILGHIQSVDVCTFSSAGKLLRFGFSAMFGFGGRTLALAEKYRWMSPSQRR
                     DFAVIKALAKLKPEDCKISFLLAGCSQDEQERKAQRSPESDCGGHWQTIRGQFLNISI
                     MAIPCLCSVAPRGLAPDTRLNNGSMALIAVRNTTRPEFVKHLKSYSSVKNQFNFPFVE
                     TYTIEEVKIHPKSNSNGYSPQEEGGHHATVSENGFPWNIDGDLMEAASEVHIRLHPRL
                     IKLYGGSLEEMNDSKVACNCI"
ORIGIN      
        1 ctgtgtatgt gtgtgtggtg tgtgtgtgta tgtgtgtgtg tgggtgtgtg tgggttccaa
       61 cttgacacaa gttggaatca tctggaaagt gggaacctca gtgggggact tgctcccatc
      121 agattggcca gtggacaagt ctgggcattt tcttgattga tgtgaaaagt tccagagcca
      181 catgagtagt gccatctctg agcaggaggt cctggcttgt gtaaggaaag taactgactg
      241 tgaacttggg ggcaggccac tgagcagcat ccctccatga cttcagttct tgccttcagt
      301 ttcctgccta ggttttccac cctgacttcc cttcatgatg gattctaaac tgtggttgga
      361 cataagccct ttcttcctca ggctggtttg gacatggtca tggtttgagt gagattctcc
      421 tggtaagtct tggctgtttg aatatgttgc tatggttact gactatctga cgaagagtag
      481 catgtgtgat cttgcagaaa gtatgtcact gtgaccttta agatttcaaa ccctaactca
      541 ttccaaatga agtctcgctg ctactttcag atgtgagctc ttgggtgctt ttccagctgc
      601 ctgcagcctt ctgccatgat ggagtctaac ttgctggacc catgagcctc aaataaaccc
      661 ttctagaacc tgccctggcc tcggtgtttt atcatagcaa tagacaagta actgatacag
      721 ccacggtgtt tattacaata gaaagcaaac tggtacatcg atcatgtttt tcatgcttct
      781 ctccttgatg cccctcaatc aagccaagca ccttgtcttc caggggctct tctgtgctca
      841 ctactctgca aggagcattt ttttctaagt gaattgttgc acagaccttc ccattctact
      901 ctgtaaagct ttgaactagc cagtgacatt gctggcttct tcatgaatgc aagtgaagac
      961 cactaacata ttttaaaagt aaaggttttg tcattgctaa actcttaaaa tttggccttc
     1021 tgtccctttt aagcaccacc cctgccatag aaatcatggg ttttcagagt tagactttta
     1081 ggattttacc atctgggatt ctaatcttca ggattatgat ttgggggatt atagatttta
     1141 tcatttttta tcattagggg tttcaacatt tgaattatag aatttgtgat actttagact
     1201 cattgttaca aatgttgagg gagttcccta accagtttgg ttatttattg agcatttact
     1261 agatactagg agctatgctg aatgcagggg tctcaatggt taacacgtta atttttcagc
     1321 catcaaagag ttcattttct acagcaaaaa ggtgatgtct ctggagtact tcttatactg
     1381 tgctcctgac actaactgca ttcagtgagt gactaagaca tacacgagga agtaaatatg
     1441 caagcatata tagcagtaac ttctttaaag aaaaataaag agagtattaa caacagccta
     1501 cagctagttg catctcggtc cccagaacct gtgagcacat gatttcattt agcaaaattg
     1561 actttgttag ccaaattgag ctaaggatta ttgagacagt cctcatgaag tcacacattt
     1621 cttgtaagag ggagagagaa gggtcaaagt cagacaaagg aaggatactc gtgagtagag
     1681 gcaaagagca taggaaacca caggcttgga agatgaaaga aagggcagaa cccagaaaca
     1741 gagaagcttg agaagctgaa aggtcaaggg aggagttttc cccaagaaaa accaggagct
     1801 gtgctgacac cgtcactttc attttaattt agacagagtc ttacgtagct catgctggtc
     1861 ttgaactcat tttgtggccg aggaagaccc ttgaccctcc ctcctttgct tctctgcctg
     1921 agtgctggga ttataggttt gtcccatcac atccacttat gtgtttcttg tcttggtgta
     1981 tggtggtgca cagatgaggg cagggtgaca ggactgagtt atgaaggtgg aacacgcggg
     2041 atttgtagtg agttggacag gaggcatgag accaaggaca aaaaggtggc atgtgagctt
     2101 ctgatgacat tgattaaaaa ttttccagaa gaataaattt gtggtggaaa atcctgagtt
     2161 agacatctgt ctgaggttag tggtcaggta gatggaggtg agacgtagcc aattggaata
     2221 tactattgga agcgctctct ctctctctct ctctctctct ctctcttgtg tgtgtgtgtg
     2281 tgtgtgtgtg tgtgtgtgtt cgatccttag aaccctttag aacacgtggg ctttattctt
     2341 ttcatcttca tgacaagacg aagccaatgt ttgcacctcc tggctttact gaagcttgac
     2401 aaatggcaac ctgccccttt gtaaaggtcc taagaagtag ccattgcctt ggactgtttg
     2461 ccttggctct cagggagttt ttaaaatgct aaggagcttg agtctgcctg acagctgtga
     2521 atccgagatg ttaactctag aagtgaactc ttccgggaac cgcacagccc ttacctacca
     2581 gtgactgcct gcaagaggct tagaggtaga tgggtttctg ctccaagaaa cacagcaacc
     2641 tggctgcaat cagaccaacc agaggcattt ccctgattgc tggggaaggc tgagtatttg
     2701 ctttcagtgc attgaatagg agaagtccct gattccctga cccactggag atttatgttt
     2761 gaaatgaatt gtctacaaca gtgtgagtgt tgaacccaga gaaatcctct tgcacctagc
     2821 cctcctgacg tagggctgtg gccacacaga gcatggattg gctgctttat gggatggatg
     2881 gagtccttag gcaatagtac aggagagctc agttttaaat catccttcca tgcttgactc
     2941 ccctcctccc acctcagagc attataagga cttcataaaa cccccttcag tgcctagtct
     3001 gcagccacac taggctcttg ttttctgatt tcaagtctta gccttggcta aatcctgggc
     3061 tttcagaggg aaatgtttct ggaatctgga cctcatccct ggagattgca aactaatcat
     3121 tttgaaatgt ggccaggaca actggattaa acagcaacaa ccctcccagg tcactcactc
     3181 tattgtacaa tcacagtgga gagctgtctc tccttccagc aggaagttaa agctgaactc
     3241 tggaggcctc ctgctaaaca gttgtgtttg gtgggtaagc cctgctcttt gcagtttcta
     3301 ggcggcggca gcagatccag cagagctaag gctgaggagg atgcatccag ggaaaggtag
     3361 gtctctgtat agatattcta cactatggat atgctggaca gtaatatcaa ctttgtaaag
     3421 tgcacgtttg tgtatgcaaa tcaggggttt acacatgctc gtgggcaatc acacagtcat
     3481 agagataatg caactccttg gggaatctca gaggagacct ctgagaaggt agatagagct
     3541 ttgcacactg aaactccttt atgactcctg gccagccact tctgcagtca cccagtaagt
     3601 agagtcttac tgtttctctt tgttgttgtt attgttgttg ttgtttttgt ttttaaattt
     3661 ctatttctgg acagcgtctt acatgtagtc ctgactggag taggactcac tgtttagctc
     3721 tggctggcct gcaactcaag ttcacctgcc tctgcctcat gagtgctgga actaaaggcg
     3781 tgtgccacca ctcagaattc tgggtacact ttagatctat ctgacaagaa cctgcacttt
     3841 atttaacacg tgactaggtg atgcataatc caattttggg gatgcctggc agactaggga
     3901 gctcagccag ggagctcata ctagcagcat ggtccagaga ggacactagc cctcgggaaa
     3961 agagaaaagc acccgcggct ccgccctctc gccccgcctc ccttcaggct agcgtcgttg
     4021 ccctggcagc gtgggacaag gcccaggcgg tggctgtagc cactctttct tccccctcca
     4081 aaggtttctg gtgggttcct aattcggccc agcccagcga cgcctcacca tgctccgcag
     4141 gagactcggg agccgggtgg gcgctctgga ggagggggcg cccgtcgggt gtccggagct
     4201 cccaaaggca gctgctgaac ccgagcgggt tctgcttcga ggcatcttcg agatcgggag
     4261 ggaaagctgc gatgtggcgc tgggcgagcg ggccctgcgg tggcaacgca tccggcccga
     4321 gctcccagct ggtggtgcca ggtgtgatcc gctgggcaaa gaagagtccc tagacctgga
     4381 agacatattc tcagtgaagc tgaagcgacg ctgctctgca aagcacccgg gcagtggcac
     4441 actgctgggc atcacacttt tcatctgctt gaaggagcag caaaacaaat taaaggactc
     4501 cacgctggat ctcattaact tcagtgagga ccactgtgac atatggttca gacagttcaa
     4561 gagaatcctg gaaggtttcg caaacaggcc aaaggctctc aagatcctcc tcaaccctca
     4621 gagtcacaga aaggaatctg tccaagtcta ctatgagaag gtcgagccac tgctgaagct
     4681 tgcgggcata aagactgatg tgacaataac agaatatgaa gggcatgccc tgtctctgct
     4741 tgacgaatgt gaactccggg gatttgatgg tgttgtctgt gttggtggag atggatccgc
     4801 gagtgaagct gcacacgctt tgctcctgag agctcagaag aatgctgggg tagagatgga
     4861 cagctccccg actctcactg gagctcagct tccacttggc ttaattccag caggatctac
     4921 caatgtgttg gcacattctc tctttggaat tcctcacgtg gtgactgcaa ccatgcacat
     4981 tatactgggt cacatacagt cagtggacgt gtgcaccttt agctctgctg gcaagcttct
     5041 tcgctttggg ttctcagcca tgtttggctt tggtggaagg acgttggctc tggcagagaa
     5101 ataccgatgg atgtccccta gtcagcggag agactttgct gtaatcaaag cattggccaa
     5161 acttaagcca gaggattgta aaatatcatt tttactagcg ggttgttctc aggatgaaca
     5221 agaaaggaaa gcacagagat ctccagaatc tgactgtggt ggccactggc aaaccatccg
     5281 agggcagttc ttgaatatca gcatcatggc gatcccctgt ctatgttcag tggcacccag
     5341 aggcttagca cctgacacta gattaaacaa tggaagcatg gctcttatag ctgtacggaa
     5401 caccactcgg ccagaatttg taaagcacct gaaaagttac tccagtgtaa aaaaccagtt
     5461 caattttccc tttgtggaga cttacaccat tgaagaagta aaaattcatc caaagagcaa
     5521 tagcaatgga tacagcccac aggaggaggg tggacaccat gcaactgttt cagaaaatgg
     5581 gtttccttgg aatatagatg gtgacttaat ggaagctgcc tcagaggttc acattaggct
     5641 gcacccaaga ctgatcaaac tctatggagg aagcctggag gaaatgaatg attccaaagt
     5701 agcatgtaat tgcatatgaa agaagtgtgt aaagtagaaa tttattataa aagaatctgg
     5761 catgcaatat atatatatat atatata
//
