LOCUS       NM_001415688            2315 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus cerebral endothelial cell adhesion molecule
            (Cercam), mRNA.
ACCESSION   NM_001415688 XM_006233768
VERSION     NM_001415688.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2315)
  AUTHORS   Starzyk,R.M., Rosenow,C., Frye,J., Leismann,M., Rodzinski,E.,
            Putney,S. and Tuomanen,E.I.
  TITLE     Cerebral cell adhesion molecule: a novel leukocyte adhesion
            determinant on blood-brain barrier capillary endothelium
  JOURNAL   J Infect Dis 181 (1), 181-187 (2000)
   PUBMED   10608765
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On Dec 22, 2022 this sequence version replaced XM_006233768.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360194.578519.1,
                                           SRR26643294.12487.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-238               JAXUCZ010000003.1  33541517-33541754
            239-349             JAXUCZ010000003.1  33543081-33543191
            350-467             JAXUCZ010000003.1  33543300-33543417
            468-602             JAXUCZ010000003.1  33544533-33544667
            603-807             JAXUCZ010000003.1  33544784-33544988
            808-927             JAXUCZ010000003.1  33547230-33547349
            928-1004            JAXUCZ010000003.1  33547627-33547703
            1005-1111           JAXUCZ010000003.1  33547800-33547906
            1112-1244           JAXUCZ010000003.1  33549164-33549296
            1245-1372           JAXUCZ010000003.1  33551454-33551581
            1373-1576           JAXUCZ010000003.1  33551756-33551959
            1577-1829           JAXUCZ010000003.1  33552838-33553090
            1830-2315           JAXUCZ010000003.1  33553332-33553817
FEATURES             Location/Qualifiers
     source          1..2315
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3p12"
     gene            1..2315
                     /gene="Cercam"
                     /gene_synonym="Ceecam1"
                     /note="cerebral endothelial cell adhesion molecule"
                     /db_xref="GeneID:296616"
                     /db_xref="RGD:1304778"
     exon            1..238
                     /gene="Cercam"
                     /gene_synonym="Ceecam1"
                     /inference="alignment:Splign:2.1.0"
     CDS             39..1829
                     /gene="Cercam"
                     /gene_synonym="Ceecam1"
                     /note="glycosyltransferase 25 family member 3; cerebral
                     endothelial cell adhesion molecule 1; probable inactive
                     glycosyltransferase 25 family member 3"
                     /codon_start=1
                     /product="probable inactive glycosyltransferase 25 family
                     member 3 precursor"
                     /protein_id="NP_001402617.1"
                     /db_xref="GeneID:296616"
                     /db_xref="RGD:1304778"
                     /translation="MRIALLLPLLLLLLLLLGPRLRAASGSEPTLPTVVLAILARNAE
                     HSLPHYLGALERLDYPRARLALWGATDHNVDNTTGMLQEWLAAVGRDYATVVWKSEDE
                     ARSYPDEQGPKHWTRERHQFLMELKQEALAFARDWGADYILFADTDNILTNNQTLRLL
                     IDRQLPVVAPMLDSQTYYSNFWCGITPQGYYRRTAEYFPTKNRQRQGCFRVPMVHSTF
                     LVSLQTEETARLAFYPPHPNYTWPFDDIIVFAYACQAAGVSVHVCNDHRYGYMNVGVK
                     PHQGLEEEKTNFIHLILEALVDGPPMMASAHVSRPPKKPSKMGFDEVFVISLARRPQR
                     RARMLSSLWEMEISARVVDAVDGRTLNSSILKHLGVDLLPGYQDPYSGRTLTKGEVGC
                     FLSHYSIWEEVVAKGLARVVVFEDDVRFEDNFRKRLERLMEDVLTQKLSWDLIYLGRK
                     QVNPEEEVAVEGLPGLVVAGYSYWTLAYTLSLAGARKLLASQPLHRMLPVDEFLPVMF
                     DRHPNDQYKAHFWPRDLQAFSARPLLASPTHYAGDTEWLSDTETSSPWDDDSGRLISW
                     TGSQKTLRGPYLHLAGSSGHSLHPHPRDEL"
     exon            239..349
                     /gene="Cercam"
                     /gene_synonym="Ceecam1"
                     /inference="alignment:Splign:2.1.0"
     exon            350..467
                     /gene="Cercam"
                     /gene_synonym="Ceecam1"
                     /inference="alignment:Splign:2.1.0"
     exon            468..602
                     /gene="Cercam"
                     /gene_synonym="Ceecam1"
                     /inference="alignment:Splign:2.1.0"
     exon            603..807
                     /gene="Cercam"
                     /gene_synonym="Ceecam1"
                     /inference="alignment:Splign:2.1.0"
     exon            808..927
                     /gene="Cercam"
                     /gene_synonym="Ceecam1"
                     /inference="alignment:Splign:2.1.0"
     exon            928..1004
                     /gene="Cercam"
                     /gene_synonym="Ceecam1"
                     /inference="alignment:Splign:2.1.0"
     exon            1005..1111
                     /gene="Cercam"
                     /gene_synonym="Ceecam1"
                     /inference="alignment:Splign:2.1.0"
     exon            1112..1244
                     /gene="Cercam"
                     /gene_synonym="Ceecam1"
                     /inference="alignment:Splign:2.1.0"
     exon            1245..1372
                     /gene="Cercam"
                     /gene_synonym="Ceecam1"
                     /inference="alignment:Splign:2.1.0"
     exon            1373..1576
                     /gene="Cercam"
                     /gene_synonym="Ceecam1"
                     /inference="alignment:Splign:2.1.0"
     exon            1577..1829
                     /gene="Cercam"
                     /gene_synonym="Ceecam1"
                     /inference="alignment:Splign:2.1.0"
     exon            1830..2315
                     /gene="Cercam"
                     /gene_synonym="Ceecam1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gggagacccg gggccctcca cagccacgga gtcccgccat gcgtatcgca ctgctcctac
       61 ctctgctgct cctgctcctg ctcctgctag ggccgcggct ccgggctgcc agtggctctg
      121 agccgacgct acccaccgtg gtccttgcca tcttggcccg caatgctgaa cactctctgc
      181 cccactacct gggtgcgctg gagcgcctgg actacccccg ggccaggctg gccctctggg
      241 gtgccacaga tcacaacgtg gacaacacca cagggatgct ccaggaatgg ctggctgccg
      301 tgggccggga ctatgcgact gtggtctgga agtctgagga tgaggccagg tcctatccag
      361 atgagcaggg gcccaagcac tggaccagag aaaggcatca gtttttgatg gagctgaaac
      421 aggaagcact ggcttttgcc agggactggg gggctgacta catcctgttc gcagacacag
      481 acaacattct taccaataac caaacactga ggcttctcat agatcggcaa ttgccagtgg
      541 tggccccaat gctggactcc cagacctatt attccaactt ttggtgtggg atcactccac
      601 agggctacta tcgccgtaca gctgaatact tccctactaa gaaccgccag cgccagggct
      661 gcttccgggt tccaatggtc cactccacct tcctggtatc cttgcagacg gaggaaacag
      721 cccgacttgc cttctaccca cctcatccca actatacttg gccttttgat gacatcattg
      781 tcttcgccta tgcctgccag gctgctgggg tctcagtgca cgtgtgcaac gaccatcgtt
      841 acggatacat gaatgtaggc gtgaaacccc accaggggct ggaggaagag aagaccaact
      901 ttatccacct gattttggaa gcactagtgg acgggccccc catgatggcc tcagctcatg
      961 tatctcggcc cccaaagaag cccagcaaaa tggggtttga tgaagtcttt gtcatcagcc
     1021 tggcccgcag accccagcgc cgggctcgaa tgctgagctc tctctgggag atggagatct
     1081 ctgcccgggt ggtagatgct gtggatggca ggacactcaa cagcagtatc ctcaagcacc
     1141 ttggtgtgga cctgctccct ggctaccagg acccctactc aggccgcacc ctgaccaagg
     1201 gtgaggtggg ctgcttcctc agccactact ccatctggga agaggtggtt gccaagggcc
     1261 tggcccgggt ggtggtgttc gaggatgatg tgcgctttga ggacaacttc cggaagcgtc
     1321 tggaacggct gatggaggat gtgctgactc agaagctgtc atgggacttg atctaccttg
     1381 gccggaagca ggtgaaccct gaggaggagg tggctgtgga ggggctgcct ggtctcgtgg
     1441 tggccgggta ctcttactgg acactcgcat acaccttaag cctggcgggc gctcgcaaac
     1501 tgttggcctc tcagcctctg cacagaatgc taccagtgga tgagttcctg cctgtcatgt
     1561 ttgatcgtca cccaaatgac cagtacaaag cacacttctg gcctcgggat ctccaagcct
     1621 tctcagccag gcctctgctt gcttctccca cccactatgc gggagacacc gagtggctca
     1681 gtgacacgga gacatcctcc ccttgggatg acgacagtgg ccgcctcatt agctggactg
     1741 gctctcaaaa gacccttcgt ggcccctacc tgcacctggc tggcagcagt ggacatagcc
     1801 tccaccctca ccctagggat gaactgtagc ccaggaggtt ccagcaggaa ctccaaagga
     1861 gcaatgagag cggagaggaa gagttgacag agccatcgga aacctgactg ctagcttggg
     1921 ctcagccagt cttctaccct ctggacccat tccagggtgg gagaaccact catagacaga
     1981 gtccgttcct gaaggtcaca ttgaagagac taagacccca aggctcttga ctctgcatat
     2041 aaatttagag cccagttagc tcaaggacag gggggcctca gccttggggg tttcaagttg
     2101 gacagaaccc agaaccctgg cctctctgag gactcagcta ctttgcctcc atctacctcc
     2161 gcctcggctc cctccccgct tcccatctag ggctcattag cacctctttc ctggctggtg
     2221 gaaagtgcag gaagatggga ggcatacctg gtgctcaaca cacagtaggc cttcaataaa
     2281 agctgtctgc attagcactt tattttttac taaca
//
