LOCUS       NM_001177829            2893 bp    mRNA    linear   ROD 09-APR-2024
DEFINITION  Rattus norvegicus centrosomal protein 85-like (Cep85l), mRNA.
ACCESSION   NM_001177829 XM_002725860 XM_002725861
VERSION     NM_001177829.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2893)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000020.1.
            
            On Oct 2, 2014 this sequence version replaced NM_001177829.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643429.57989.1,
                                           SRR26643296.40001.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-345               JAXUCZ010000020.1  33222499-33222843   c
            346-504             JAXUCZ010000020.1  33195927-33196085   c
            505-1292            JAXUCZ010000020.1  33185713-33186500   c
            1293-1414           JAXUCZ010000020.1  33155290-33155411   c
            1415-1532           JAXUCZ010000020.1  33147322-33147439   c
            1533-1712           JAXUCZ010000020.1  33131679-33131858   c
            1713-1865           JAXUCZ010000020.1  33129459-33129611   c
            1866-2020           JAXUCZ010000020.1  33127579-33127733   c
            2021-2138           JAXUCZ010000020.1  33125117-33125234   c
            2139-2189           JAXUCZ010000020.1  33124631-33124681   c
            2190-2297           JAXUCZ010000020.1  33121406-33121513   c
            2298-2526           JAXUCZ010000020.1  33118616-33118844   c
            2527-2893           JAXUCZ010000020.1  33115438-33115804   c
FEATURES             Location/Qualifiers
     source          1..2893
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /map="20q11"
     gene            1..2893
                     /gene="Cep85l"
                     /note="centrosomal protein 85-like"
                     /db_xref="GeneID:100365935"
                     /db_xref="RGD:2319745"
     exon            1..345
                     /gene="Cep85l"
                     /inference="alignment:Splign:2.1.0"
     CDS             273..2690
                     /gene="Cep85l"
                     /note="rCG22129-like"
                     /codon_start=1
                     /product="centrosomal protein of 85 kDa-like"
                     /protein_id="NP_001171300.1"
                     /db_xref="GeneID:100365935"
                     /db_xref="RGD:2319745"
                     /translation="MWGRFLAPEAGGRDSPGGARSFPAGSDYSSAWLPGNESLWQATA
                     VPSNPRNNHIRRHSITSDSGDTGIGTSCSDSVEDHSTSSGTPSLKPSGSLLTPPTAHV
                     MPCNSSASVSKHRGDLPSDGSKWSTNLMQTLGEHGTGERDSSLHMKDFRPLRKWSSLS
                     KLTALENRNQSAIAYTQELRNVLEKTGKGKAFTSHLRTFGPSCFHDTMEMLKLEDKQV
                     NTKRPSTPHCKDKFESCNKEDVRVSSSALRRQTLDMTYSALPESKPIVTGSEACESPK
                     YLMLGQQAVGGVPIQPSVRTQMWLTEQLRTNPLEGRTTEDSYSLAPWQQPQTEEFQQG
                     SETPMQVLTGSSRQTYSPPGFQDFSKWESVLKIKEGLLRQKEIVIDRQKQQINHLHER
                     IRDNELRAQHAMLGHYVNCEDSYMSSLQPQYESSSGQTPFTEQPLSHPHQEELEQKLA
                     STEKEVLQLNEFLKQRISQFSEEKKKLEEKLKTRDRYISSLKKKCQKESEQNKEKQRR
                     IETLEKYLADLPTLDDVQSQSLQLQVLEEKNKNLQETLIDTEKKLEEIKKQCQDKEVQ
                     LLCQKKKEKELVTSVQSLQQKVEKCLEDGIRLPMLDAKQLQSENDSLREQNATASKII
                     ESQQDEINRMILEIQSMQGKLCKEKLSARSTVEELGRKEESLQRLTEALLENQRHMGE
                     TYSLLDQGHEAEQSRPQTVPKWPLFDLTVIDQLFKEMSYCLFDLKALCSILNQRAQGK
                     EPNLSLLLGIRSMNCSAEETENDHSPETLTKKLSDVCQLRRDIDELRTTISDRYAQDM
                     GDNCVTQ"
     exon            346..504
                     /gene="Cep85l"
                     /inference="alignment:Splign:2.1.0"
     exon            505..1292
                     /gene="Cep85l"
                     /inference="alignment:Splign:2.1.0"
     exon            1293..1414
                     /gene="Cep85l"
                     /inference="alignment:Splign:2.1.0"
     exon            1415..1532
                     /gene="Cep85l"
                     /inference="alignment:Splign:2.1.0"
     exon            1533..1712
                     /gene="Cep85l"
                     /inference="alignment:Splign:2.1.0"
     exon            1713..1865
                     /gene="Cep85l"
                     /inference="alignment:Splign:2.1.0"
     exon            1866..2020
                     /gene="Cep85l"
                     /inference="alignment:Splign:2.1.0"
     exon            2021..2138
                     /gene="Cep85l"
                     /inference="alignment:Splign:2.1.0"
     exon            2139..2189
                     /gene="Cep85l"
                     /inference="alignment:Splign:2.1.0"
     exon            2190..2297
                     /gene="Cep85l"
                     /inference="alignment:Splign:2.1.0"
     exon            2298..2526
                     /gene="Cep85l"
                     /inference="alignment:Splign:2.1.0"
     exon            2527..2893
                     /gene="Cep85l"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ttagagaagc cgcagcggca gattttgctc agagccccgg agcctgggac cgcgccgccg
       61 tcaccgggga gctgctcgct tccccggccc gggcctcagc gcagccggct gggccatggc
      121 agccaccgcg ctccggggcc atcgctgagc agccgttaag ccgcacgccc gggtccggtc
      181 cgcgccgccg cggcccaggc tccgctcaag tttccgccca gaagccgagg tgactgcggg
      241 ccccaagctc caggctcgcc cgctcgcccg ctatgtgggg ccgtttcctg gccccggagg
      301 ctggcggccg ggacagcccc ggcggggccc gcagcttccc tgcgggctcg gactattcat
      361 cagcatggtt acctggtaat gaatcattat ggcaggccac agctgttcca tctaaccccc
      421 gaaataacca tatccggaga cacagcataa cgtctgacag tggagacact ggcattggca
      481 cttcctgttc tgacagcgtg gaagaccact caacttccag tggcacgcca tctttgaagc
      541 ctagtggatc gctgcttacc cctcccactg cccatgtgat gccatgtaac tccagtgctt
      601 cagtttccaa acacagggga gatctaccgt cagacggctc taaatggagt actaatctca
      661 tgcagacact gggagagcac ggcacagggg agcgggactc ctccctacac atgaaggact
      721 tcaggcccct gaggaagtgg tcatctctgt ccaagcttac tgccctggag aaccgcaacc
      781 agagtgccat tgcatacacg caagagttga ggaatgtctt ggagaagaca gggaagggca
      841 aggctttcac gtcccactta cggacctttg ggcctagctg cttccatgac actatggaga
      901 tgcttaaact ggaagacaag caagtgaaca cgaaacggcc atcaactccg cactgcaagg
      961 ataaatttga gagctgcaac aaagaggatg tcagagtctc ttcctctgct ctcaggagac
     1021 agactttaga catgacatac agtgccttac ctgagagcaa gcccattgtg acaggctcag
     1081 aggcttgtga gtctccaaag tatttaatgc tgggccagca ggcagtaggt ggagttccca
     1141 ttcaaccttc tgtgaggact cagatgtggc ttacagagca gttacggaca aacccattgg
     1201 aaggcagaac cacagaggat tcttacagtt tagctccttg gcaacagcca caaactgaag
     1261 agtttcagca aggaagtgag acaccaatgc aggttttgac tggatcatct cgtcagactt
     1321 attcacctcc tggtttccag gatttcagta aatgggaatc agtgctgaaa ataaaagaag
     1381 gacttctgag gcagaaggaa attgtaattg ataggcagaa gcaacaaatt aaccacctac
     1441 atgaaaggat aagggataat gaactacggg cgcagcatgc tatgctagga cattatgtca
     1501 attgtgaaga ctcctacatg agtagtttac agcctcaata cgagagcagt tcaggccaga
     1561 ctccatttac agagcagcca ctgtcccatc cccaccagga agaacttgag caaaagctag
     1621 catctaccga gaaagaagtt ttgcagctca atgagtttct caaacaaaga ataagccaat
     1681 tcagtgaaga gaagaagaaa ttagaggaaa agctgaaaac cagagacaga tacatcagca
     1741 gcctgaaaaa gaaatgccag aaggagtctg agcaaaacaa agagaagcag agacggatcg
     1801 agaccttgga aaagtacctg gccgatcttc caactctaga tgacgtccag agtcagagtc
     1861 tgcagcttca agttcttgaa gaaaaaaaca agaatttgca agaaactttg atagacacag
     1921 agaagaagct tgaggagatc aagaagcaat gtcaagacaa agaagtgcag ctgctgtgcc
     1981 agaagaagaa ggagaaggag ctggtaacgt ccgttcagag cttacaacaa aaagtagaaa
     2041 aatgccttga agatggaatc cgccttccca tgttagatgc caaacagctt cagagtgaaa
     2101 acgatagtct cagagagcag aatgcgacag ccagtaagat aatagagagc cagcaggatg
     2161 aaattaacag aatgatttta gaaattcagt ctatgcaagg aaaactttgt aaagagaaat
     2221 tgagtgcacg gagcactgtg gaagagctag gaaggaaaga agagagcctc cagaggttga
     2281 cagaagcact gcttgaaaac caaagacaca tgggagagac atactcttta ctggatcagg
     2341 gccatgaagc agagcagtct aggccacaga ccgttcctaa gtggcctctc tttgatttga
     2401 ctgtgattga tcagctgttc aaggaaatgt cctattgttt gtttgacttg aaagcattgt
     2461 gtagtattct taatcaacgc gctcagggca aggagccgaa cctctccttg ttactgggaa
     2521 tccgatcaat gaactgttca gctgaagaga ctgaaaatga ccacagccca gaaacgctca
     2581 ctaaaaagct ctcggatgtg tgccagttac ggagggacat tgatgaattg aggactacaa
     2641 tatcagaccg ctatgctcag gacatgggag acaactgtgt tacccagtga tccagtgttg
     2701 gtccacagca acaatgatcc attgtgaaac gctgctgtgt tggactcctt tgtttctctc
     2761 taggatgcac aaggggagag acgctccttg ccatgcactt cagctttctt gttgagacat
     2821 aatgcgttcc gaagacagtt ttaaagggac tgatcaaatc aggcaaacaa atcccgttac
     2881 taaagtctat aag
//
