LOCUS       XM_039082351            7673 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus centrosomal protein 164 (Cep164),
            transcript variant X1, mRNA.
ACCESSION   XM_039082351
VERSION     XM_039082351.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039082351.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7673
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7673
                     /gene="Cep164"
                     /note="centrosomal protein 164; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 32
                     ESTs, 16 long SRA reads, 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 31 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:363055"
                     /db_xref="RGD:1561243"
     CDS             215..6376
                     /gene="Cep164"
                     /codon_start=1
                     /product="centrosomal protein of 164 kDa isoform X1"
                     /protein_id="XP_038938279.1"
                     /db_xref="GeneID:363055"
                     /db_xref="RGD:1561243"
                     /translation="MSRRPILLGDQLVLEEDSDETYVPSEQEILDFARVIGIDPIKEP
                     ELMWLAREGIEAPLPKGWKPCQNITGDLYYFNFDTGQSIWDHPCDEHYRKLVIQEREK
                     WSAPGAIKKKDKKKKKEKKNKKDKETSKSPLEPQPEQGLLPSSSFLRGLSPLSAPGLA
                     DLDLDQEVQARNEAFKKGRSPCMLGDTPWPLMGALPGKLQPLSKGQASRTHQIFADVE
                     KILGRPSIQCKTELGDPQGLESVQKATEKIYLGFSDPEIEKMELRTRQQRPGAGGFQN
                     PELLHSGQDVSECRSQTPAHSKLSEAPKGLQLRGEHHNHSIAALNCTGPGGDKGQSPV
                     SLPPSEEEPSLSLCSSGHVSAARKNKRFLLESSPAEDFSWQGVPGEGGDLGRERWRRE
                     PPGLWMGQVSKLINKDAPERCKETKPTAPKAAEASAEESPRGPLLMPPDTPASEPVPK
                     PPSGDPAIEDRHHPPPEAPEPPNEERRPSVPTADSDSSSGGGSSLASPLGSQVLGEVN
                     NFPWDLQNPQGSVPVMGQSGPGPRDVHFCPFLGPQLSHVSSAEEQSESEDYSEDQRFY
                     QHILQMVKISRRLEGLGLPENMQEVPCKDVAGMVCGTANESSRMSSEGEHKSIIAPER
                     DSGLLTWGPELLEHPPGAVSAPPGQEPSQPAQCQPSSGLRQGLVPPSSDIGLAAEPSK
                     MQLLNQVLGPSLAPVQAPLWGLAPLRGLGDAPFSALRGSQSVSLGSSADPGHLGEAML
                     PPQGLKVAACTKGLLASVHEGKSALSLLTLGEETNEEDEEESDNQSIRSSSELLKNLH
                     LDLGALGGNFEYEESPRTSQPDKKDVSLDSDDDRPPTPGKLFSQGADSSVGSANVSKS
                     QGRGASLWNPQKESQSSNPKASSSPAAPGLDPGGDQPNRVSKKEQEEDPVEAEEEASR
                     EDSAAKEPKEPSALEESASDASEESGIHEHLKDPQHSESGTSGPKSFLRLDIGLRGRV
                     SEHLLDGNMPSPALGGGHWEAQGLGQEEQDDSRSSRSEPQSKHTQVSEREQPRSTLHS
                     QATEEGPLRTLEGQPEGQPGKDSVASPAPLSFLQREQVLSPPAFPERAEEKHSQAEEL
                     GLGQQEAEETEEKVEVSPSSPVSPEVQTAEPAAPQKQFSEAVLKGIEEGVTQELEEDH
                     RLLLELQKEKLQQLEERLCREEEEEEKEEEEEEKEEEEEEEKEEEEEEEKEEEGEEEE
                     KEEKEEEEEEEEEEEKEEKEEEHWLYQQKEKSLSLLKTQLQKAAEEEEKEEETQIREE
                     ESQRLACLRAQVQSSTEAFENQIRAEQQTALQRLREEAETLQKAERASLEQKSRRALE
                     QLREQLEAEERSAQAALRAEKEAEKEATLLQLREQLEGERREAVAGLEKKHSTELEQL
                     CSSLEAKHREVISNLQKKIEGAQQKEEAQLQESLGRAEQRTHQKVHQVIEYEQELSSL
                     LRDKRQEVEREHERKMDKMKEEHWQEMAEARERYEAEERKQRADLLGHLTGELERLRR
                     AHERELESVRQEQDQQLEDLRRRHRDQERKLQDLEAELSSRTKDVKARLAQLNVQEEN
                     MRKEKQLLLDAQRQAALEKEEATATRRHLEEAKKEHTHLLESKQQLRRAIDDLRVRRV
                     ELESQVDQLQTQSQRLQKHVSSLEAEVQRKQNILKEMAAETNAPPHPEPGLHIEDLRK
                     SLGTNENQEVSSSLSLSKEGIDLSMDSVRHFLSAEGVAVRSAKEFLVRQTRSMRRRQT
                     ALKAAQQHWRHELASAQEVDEDLPGTKVLENVRKNLDEETKHLDEMKSAMRKGHDLLK
                     KKEEKLNQLESSLLEEVSDEDTLKGSSIKKVTFDLSDMDDLSSESFESCPLLHITPTP
                     NSADPNKIHYLSSSLQRISSELNGVLSVLGSLNSQPLPQGLSSQPPPPLLTSSLRSSK
                     NILAPAYSSQTKPSSLSSMTPTSTQWAWDPGQGTKLSPSSSSQTVDDFLLEKWRKYFP
                     TGIPLSSGSPPPPENKLGYVSVSEQLHLLQRSHSRVPKTDSISIQSMIESNRKWLEHF
                     RNDPKVQLFSSVPKSTTTSNLLQLGLDENNRLNVFHY"
ORIGIN      
        1 agttgctagg ccggtgcctt tccggaagtg gttgctggtg gctgcagggc aacaccccgg
       61 cgtccctgga agcggggggg agccggacac cccggcgtcc ctggaagtgg ggggccgggg
      121 tggtgctggg gaggcggcgc agagccatcg tcccagaaaa ccccggatcg gggacagggt
      181 ctctgggatt gagatagtca cgccaggctg aaccatgtct agacgaccta tcctcttagg
      241 tgaccagctg gttctggagg aagattctga tgagacctac gttcccagtg agcaagaaat
      301 ccttgacttt gccagagtga ttggtatcga ccctatcaag gaaccagaac tgatgtggct
      361 ggcgagggag ggtattgagg ctccattgcc caagggctgg aaaccatgcc agaacatcac
      421 aggcgacctt tactatttca actttgacac tgggcagtcc atctgggacc acccctgtga
      481 tgagcactac cggaagttgg tcatccaaga gcgggagaag tggtcggctc ccggggccat
      541 taagaaaaaa gacaagaaaa agaaaaagga aaagaaaaac aaaaaggaca aagagacctc
      601 taaaagtcct ctggaaccac agcctgaaca gggacttctg ccttcttcct cctttctccg
      661 tggcctgtcc cctctctcag cacctgggct tgctgatctg gacctagacc aagaggtaca
      721 ggctagaaat gaggccttta agaaagggag gagcccgtgc atgctgggcg acacaccgtg
      781 gcctctcatg ggtgcccttc ctggtaagct gcagccactc tccaaaggcc aagcttctcg
      841 aacccaccag atctttgctg acgtggagaa aatcttaggc aggccttcga tccagtgcaa
      901 gacagagtta ggagacccac agggtctgga gtcagtccag aaggccacag agaaaatcta
      961 cctggggttt tcagaccctg aaatagaaaa aatggaactg aggaccagac agcagagacc
     1021 cggcgcgggg ggttttcaga accccgaact actccacagt gggcaggatg tgtcagaatg
     1081 taggagccag acccctgctc actctaagct ttctgaggct cccaaaggcc tgcagctgag
     1141 aggggagcat cacaaccaca gcatagctgc actgaactgc acaggccctg gaggggacaa
     1201 aggtcagagc cccgtttcct taccaccctc tgaggaggag ccctccctgt ccctttgttc
     1261 atctggccac gtatcagctg cccggaagaa caagcggttt ttactagaga gcagcccagc
     1321 agaagacttc agctggcagg gagtccctgg ggaaggtggg gacctgggca gggagaggtg
     1381 gaggagagag cctccaggcc tgtggatggg gcaggtctcc aagcttatca acaaggacgc
     1441 cccagagaga tgcaaggaaa caaaacccac tgctcccaag gctgcagagg cctcagccga
     1501 agaatcacca cgggggccct tgctgatgcc gcctgacacc ccggcatcag aaccagttcc
     1561 aaagccccct tcaggggatc ctgccatcga agacaggcat catcctccac ctgaggctcc
     1621 agaacctccc aatgaagaga ggaggcctag tgttcccacg gctgactcag atagcagtag
     1681 tggagggggc agcagcctgg cctcacccct tggctcacag gtcctaggtg aggtaaacaa
     1741 cttcccctgg gacctgcaga acccccaggg gtctgttcct gtcatgggcc agtcaggccc
     1801 agggcctaga gatgtgcact tctgcccttt cctggggccc cagttgtccc acgtgagctc
     1861 cgcggaggag cagtccgaga gtgaagacta ctccgaggac cagaggttct atcagcacat
     1921 cctgcagatg gtcaagatct ccaggcggct ggaggggcta gggctgcctg agaacatgca
     1981 ggaagtgccg tgcaaagatg tcgccggcat ggtctgtggc acagccaatg agtcttccag
     2041 gatgtctagt gagggtgaac acaagtccat catagctcca gaaagggact cggggttact
     2101 gacctggggg ccggagctgc tagaacatcc tccaggagca gtgtccgccc ctccggggca
     2161 ggagccctct cagccagcac agtgccagcc gagcagcggc ctcaggcagg ggctagtccc
     2221 accgagttcc gacattggac ttgctgcaga gccaagcaag atgcagcttc tcaaccaggt
     2281 cctgggtccc tccttagccc cagtccaggc ccctctttgg ggcctggctc ccttacgagg
     2341 gcttggggat gccccattct ccgctcttcg tggatcccag agtgtgagct tggggagctc
     2401 ggcagatcct gggcatcttg gggaggccat gctgcctcca cagggtctca aggttgctgc
     2461 ttgtacaaag ggcctcttgg cttctgtcca tgagggcaag agtgctctca gcctcttgac
     2521 tttgggggaa gagaccaacg aggaggacga agaggagagc gacaaccaga gcatccggag
     2581 ctccagtgag cttctcaaga atctgcatct agaccttggt gccttgggag gtaactttga
     2641 gtatgaggag tctccaagaa ccagccagcc agacaagaag gatgtttctc ttgactcaga
     2701 tgacgatcgc cccccaaccc ctggcaagct gttcagccag ggtgcagaca gtagtgtggg
     2761 cagtgccaat gtcagcaagt cccaagggag aggggcaagt ctctggaacc cacagaaaga
     2821 aagccagagt agcaatccca aggcttcctc aagtccggcg gctcctgggt tggaccctgg
     2881 aggtgatcag cctaacaggg tctctaagaa ggagcaggaa gaggacccag tggaggcaga
     2941 agaggaggct tccagggagg acagtgcagc caaggagcca aaggagcctt ctgccctgga
     3001 ggagagcgcc tcagatgcca gtgaagagtc aggaatccat gaacacttga aagaccccca
     3061 gcactcagag tccggaactt ctggcccgaa gtctttcctc cgcctggaca tcggtcttcg
     3121 tggccgggtc tcggagcatc tcctggatgg taacatgcct tctccggcct tgggtggagg
     3181 ccactgggag gcccaggggt taggccaaga agagcaagat gacagcaggt ccagcagaag
     3241 tgaaccacag agcaagcaca cccaagtctc agagagggaa cagccccgga gtacccttca
     3301 cagccaggct actgaggagg ggcctctgcg gaccctggag ggacagcctg agggacagcc
     3361 tgggaaggac tctgtagcca gccccgcccc actgtccttc ctccagaggg agcaggtcct
     3421 gagcccacct gctttccctg agagggctga ggaaaaacac tcccaggccg aggagctggg
     3481 ccttgggcag caggaggctg aggagaccga ggagaaagta gaagtcagtc ccagctcacc
     3541 tgtctctcca gaggtgcaaa ctgcagagcc tgcagctcct caaaagcagt tctcagaggc
     3601 tgtactgaag ggcatagaag agggagtgac ccaggaactg gaggaagacc acaggttgct
     3661 gctggaattg cagaaagaga agctgcagca gctggaagag aggctgtgtc gagaggaaga
     3721 ggaggaggag aaggaggaag aagaggagga gaaggaggaa gaagaagagg aggagaagga
     3781 agaagaggag gaggaggaga aggaagagga gggggaggaa gaagagaagg aagaaaaaga
     3841 ggaggaggag gaagaggaag aggaggagga gaaggaggag aaagaggagg agcactggct
     3901 ttaccagcaa aaggagaagt ccctcagcct cctgaaaaca cagttacaga aagccgctga
     3961 ggaggaggag aaggaagagg agactcagat tagagaggag gaaagccaga ggctggcctg
     4021 cctccgggcc caggtgcagt ccagtacaga agcatttgag aaccaaatta gagccgagca
     4081 acagactgcc ctacagaggc ttcgagaaga ggcagagacc ctccagaaag ctgaaagggc
     4141 cagcttggaa cagaaaagca ggcgggctct ggagcagctg agggagcagc tggaggcaga
     4201 ggagaggagt gcacaggcag ccttgagggc agagaaggag gcggagaagg aggccactct
     4261 gctgcagctg agggagcagc tggaaggaga gaggagagaa gcagtggcag gcctggagaa
     4321 gaagcacagc actgagctgg agcagctctg ttcctcactg gaagccaaac accgggaggt
     4381 gatctccaac ctccagaaga aaatagaggg agctcagcag aaagaggagg cccagttaca
     4441 ggagagcctt gggcgggctg agcagagaac tcaccagaag gttcatcagg tgatcgagta
     4501 tgagcaggag ctcagcagcc tccttcgaga caagcgccag gaggtggaga gggagcatga
     4561 gaggaagatg gacaagatga aggaggagca ctggcaagag atggctgaag ccagagagcg
     4621 atatgaagct gaggagagaa agcagcgggc cgacctcctg gggcacctga ctggagagct
     4681 ggagcgcctg cgaagggccc atgagcgaga gttagagagc gtgaggcagg agcaggacca
     4741 gcagcttgaa gacctgaggc gccgacaccg ggatcaagaa aggaaattac aagatttaga
     4801 ggcggaactc tcatctagaa ctaaagatgt caaggccaga ctggctcagt tgaatgttca
     4861 ggaggagaac atgcggaaag agaagcagct gctcctggac gcgcagaggc aggctgctct
     4921 ggagaaggag gaagccacag ccacccgtcg gcacctggag gaagcaaaga aagagcacac
     4981 acacctgctg gagtcgaagc agcagctacg cagggccatc gatgacctgc gggtccggcg
     5041 ggtggagctc gagtcccaag tggaccagtt acagacacag agtcagagac tgcagaagca
     5101 cgtgagcagc ctagaggccg aagtacagag gaagcagaac atcttgaaag aaatggcagc
     5161 tgagactaat gctcccccac acccggagcc aggtctccac attgaggacc tgaggaaatc
     5221 cctcggcaca aatgagaacc aagaggtgtc ttcttctctg tccctgagta aggaagggat
     5281 cgacctgtcc atggatagtg tccggcactt cctctctgct gagggtgtag ctgtccgcag
     5341 tgctaaggag ttcctggtgc gccagacacg ctccatgcgg aggcgacaga cagctctgaa
     5401 agccgcccag cagcactggc gccatgagct ggccagtgcc caggaggtag acgaagacct
     5461 gcccggcact aaggtcctgg agaacgtgcg caagaacttg gatgaggaga ccaagcacct
     5521 ggacgagatg aagtcagcca tgcggaaagg ccatgacttg ttgaagaaga aagaggagaa
     5581 gctgaaccaa ctggaatctt ctctactgga agaggtctct gacgaggaca ctctgaaagg
     5641 atcctctatc aagaaggtga cctttgatct cagcgacatg gatgacttga gcagtgagag
     5701 ttttgagtcc tgccccctgc tgcacatcac cccgacccca aactctgctg atcccaacaa
     5761 gattcattac ctgagcagtt cccttcagcg aatcagcagt gagctaaatg gcgtgctgag
     5821 cgtgctggga agtctcaact cccagccact accacagggc ctcagcagcc agcccccacc
     5881 tccgctcctc acctcctcac ttcggtcctc caagaacatc cttgcccctg cctactcctc
     5941 ccagaccaag ccctcctcct tgtcttctat gacacccaca tccacccagt gggcctggga
     6001 cccgggacag ggcaccaagc tgtctccctc ctcctcctcg caaaccgtgg atgattttct
     6061 gctggagaag tggcgcaagt atttccccac gggcatcccc ttgtccagtg gctccccgcc
     6121 cccaccggag aacaagctgg gttatgtatc tgtaagtgag cagctccacc tcctgcagcg
     6181 ctcccactcc cgagtcccca agacggacag tatcagcatt cagagcatga tcgagtctaa
     6241 ccggaagtgg ctggaacatt tcaggaacga ccccaaggta cagcttttct cctcggtgcc
     6301 caaatcaaca accacatcga acttactgca gctgggcctg gatgagaaca acagactgaa
     6361 tgtgtttcac tactaagccc cgtgtggggc cagggcagtg ctgccacctc ttcctctata
     6421 acaagtgcct aaggagccgc cagcacttta tttctctctc tcaccaaaca tgtcgtccgt
     6481 tgcgtactcc agctaggatt tggaggaacc accgggtaac taggtggaaa gtacgactgt
     6541 agatggccac acacacttca accgtggact gtcctgagca gaagtgtgga caccttcgag
     6601 cttcagcatc aaagcggcac tgagatgtgg ctgtcgaaga cttcagtggt gcggccacct
     6661 tagttaaagc aactgctttg ggaggcctag ggaacttcct tggaggttgg tcccctgctg
     6721 agggtgtggt cctttatcct tacagcctcc tagcatcgca tgccatggga cttggctatg
     6781 ctgggcccgt gcctctttct gatacctcag ccctgacagg atcacacccg tccctctctt
     6841 tttgcccttt ttctttttaa atgtcttctg tctcaggttt gggctcagct gcctgagcct
     6901 ggctgggcgt tgctagaggg ccccagaggg atgttctgcc tccctcctct cagccggcac
     6961 tgtgctttcc acacggttct cagaagcaca cttccctccc ttaggatgct ctctggagct
     7021 atcccttgcc ctcaggtctc aagcacctat ctctccagga agccaaaaag ccatagggaa
     7081 agaggaatgc cttctgtccc atcttgatat gtctcttctt ttacctccca agtgtgtccg
     7141 tgagccctat ttccatctgt ccttctacct gggccacccc tggcctagtc caactaccaa
     7201 ctctgtccag agctctgtgg atggggctga ctagagcccg gcactggcag gagccatctt
     7261 cagtcaggtg cttctggctc aagcctcctc ggccccactt cccctcagcg ggctctgtag
     7321 gagctacagg tgatgttcgc agcatctgtc ttactgttta aacagaatgc cctcattttt
     7381 cttgtcttga gaagctgcgg gatgccttta cccttgcaac ctgcaggatc tcacagattc
     7441 atttttcatt tctttgccac ggaataaacc tcgaatggcc ggttggcttt ttaaccctct
     7501 tagacatctt ttagtcatcg gctgaccaca cacagaaaag gtccgttttg tcatttgttc
     7561 cactctgtgt gccttgagaa ccactcctgt gatacgactc tggtgacagt cctgttgttt
     7621 tgttttgttt tttgcatcta ttaaatctct gcaagtcggt tttctatgag gca
//
