LOCUS       NM_001277060            5441 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus centrosomal protein 162 (Cep162), mRNA.
ACCESSION   NM_001277060 XM_001054857 XM_001063109
VERSION     NM_001277060.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5441)
  AUTHORS   Wang,W.J., Tay,H.G., Soni,R., Perumal,G.S., Goll,M.G.,
            Macaluso,F.P., Asara,J.M., Amack,J.D. and Tsou,M.F.
  TITLE     CEP162 is an axoneme-recognition protein promoting ciliary
            transition zone assembly at the cilia base
  JOURNAL   Nat Cell Biol 15 (6), 591-601 (2013)
   PUBMED   23644468
REFERENCE   2  (bases 1 to 5441)
  AUTHORS   Jakobsen,L., Vanselow,K., Skogs,M., Toyoda,Y., Lundberg,E.,
            Poser,I., Falkenby,L.G., Bennetzen,M., Westendorf,J., Nigg,E.A.,
            Uhlen,M., Hyman,A.A. and Andersen,J.S.
  TITLE     Novel asymmetrically localizing components of human centrosomes
            identified by complementary proteomics methods
  JOURNAL   EMBO J 30 (8), 1520-1535 (2011)
   PUBMED   21399614
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000008.1.
            
            On or before Mar 2, 2013 this sequence version replaced
            XM_001063109.3, XM_001054857.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMEA5760383, SAMEA5760386
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            RefSeq Select criteria    :: based on conservation, expression,
                                         longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-57                JAXUCZ010000008.1  97086664-97086720   c
            58-172              JAXUCZ010000008.1  97082261-97082375   c
            173-316             JAXUCZ010000008.1  97079204-97079347   c
            317-500             JAXUCZ010000008.1  97078755-97078938   c
            501-568             JAXUCZ010000008.1  97077064-97077131   c
            569-687             JAXUCZ010000008.1  97072826-97072944   c
            688-718             JAXUCZ010000008.1  97071332-97071362   c
            719-835             JAXUCZ010000008.1  97070801-97070917   c
            836-1027            JAXUCZ010000008.1  97066620-97066811   c
            1028-1109           JAXUCZ010000008.1  97066023-97066104   c
            1110-1383           JAXUCZ010000008.1  97061759-97062032   c
            1384-1645           JAXUCZ010000008.1  97060456-97060717   c
            1646-1776           JAXUCZ010000008.1  97058491-97058621   c
            1777-2004           JAXUCZ010000008.1  97057949-97058176   c
            2005-2145           JAXUCZ010000008.1  97057313-97057453   c
            2146-2258           JAXUCZ010000008.1  97055665-97055777   c
            2259-2364           JAXUCZ010000008.1  97054272-97054377   c
            2365-2491           JAXUCZ010000008.1  97051135-97051261   c
            2492-2655           JAXUCZ010000008.1  97049884-97050047   c
            2656-2760           JAXUCZ010000008.1  97049067-97049171   c
            2761-2973           JAXUCZ010000008.1  97045855-97046067   c
            2974-3626           JAXUCZ010000008.1  97042633-97043285   c
            3627-3768           JAXUCZ010000008.1  97040407-97040548   c
            3769-3867           JAXUCZ010000008.1  97038682-97038780   c
            3868-4002           JAXUCZ010000008.1  97032498-97032632   c
            4003-5441           JAXUCZ010000008.1  97029677-97031115   c
FEATURES             Location/Qualifiers
     source          1..5441
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q31"
     gene            1..5441
                     /gene="Cep162"
                     /gene_synonym="Qn1; RGD1307365"
                     /note="centrosomal protein 162"
                     /db_xref="GeneID:300880"
                     /db_xref="RGD:1307365"
     CDS             1..4212
                     /gene="Cep162"
                     /gene_synonym="Qn1; RGD1307365"
                     /note="protein QN1 homolog"
                     /codon_start=1
                     /product="centrosomal protein of 162 kDa"
                     /protein_id="NP_001263989.1"
                     /db_xref="GeneID:300880"
                     /db_xref="RGD:1307365"
                     /translation="MAHYSKVDLDEEFERFMKELSDDSFENSNETPSQPNKDRKKKDT
                     APWWIAEDGFEDDGLLGTNVSYLKTKKTYQPITDMEEENEKVQFLKSSGTSVLSVDSL
                     EANELVASELHHSTLGLGLDTLEEQEEKEQFFARLEKGLTSSIDYSKLNQELDSDDSA
                     QFRVLHRYQGNVEPAEGGRENESEHKELPETYSDDFEDAEDTDEPLITKDEETRPKEN
                     PESGKGSFPNQEEEKTGMLANVVLLDSFDSVEDVDLNNHERPTPKAKALPEMAGGELA
                     ETGVSYGQSSGDTEALHQAYHHVAHSLGDTGEPRIEASPGHSVRSSAKDGLQENEESS
                     KNISTTESDLPTVEELMKPIRIDSYGIRGFDLQPVSLQKAVGSKEAESVSSLPLTVNT
                     NTMSQDTRHVSPFPHEQDESVVLHRTAGEGVGSSCPATEEHLDKMYLEILRKKTSVNP
                     SLLPQDNKANQTSRSRLSAREEAPVTSKQVPCKKARSAPPLPRRKPQSGLYASARSSG
                     YSKPSSPLQFFSALEKKTSKDNTKTKNVRPIPTSNQFRKREILSGTKLIKPAALNKPS
                     PHREGSPATPKRPEDPSDDSFVQLQTETLGSYGGNREKELLMLKRAQDAEEKWRGAQA
                     LIEQIKMTFSEKEKELENTVESLKRQQERELFKLNQENYILQAKLSSFEETSRKQRWL
                     QFGETSDPLTEEKLKQIQKEIQEQETLLQGYQQENERLYSQVKDLQEQNKKNEERMFK
                     ENQNLFSELASLKEQMHKNHFLPQAVENIEPTKNQSFTDLLAELRAAQKEKNHLMEDI
                     KRLKQDKQALEVDLERVKRERDQAKDQIAYTTGEKLYEIKILEETHKQEVSRLQKRLQ
                     WYAENQELLDKDAARLREANEETERLKLEIEKLKTESGSPANQQRLRSKERALDAKRI
                     QDLERQVKEMEGILKRRYPNSLPALILAASAAGDSVDRNTVDFMERRIKKLEADLEGK
                     DEEAKKSLRTMEQQFQKMKIQYEQRLEEQEQMLAHRQREAPQNQHNSSSRLKALETEL
                     GGIKEAHQITVRKLEAEIDVLKHQNAHLEHKKNDKEDQDLQSIEFQVEQAQARAKLAR
                     LNEELAAKGREIQDLTKTVERLQKERRMMLSRQSPRGREEMAAKRLKKEILHPNSGNA
                     NAFSETLGAKLYHPHTFTDSHISEVLEENYRLRSELEGLTLEREKLKMESEAAVCQLE
                     SSMKRVKDDAAAHIASLKAAHEREIEKLLCQNAVENSSSRVAELNRKIATQEVLLKHF
                     QGQVNELQGKQESLSLSQVREEILQKQITKLLEELKEAKENHTPEMKHFMGLERKIKQ
                     MEMRHKQREQELQQIIQQTRQVVETEQNKEVEKWKRLAQLKNRELDKFRTELDSILDV
                     LRELHRQGVVVPVALADEESTAKEF"
     exon            1..57
                     /gene="Cep162"
                     /gene_synonym="Qn1; RGD1307365"
                     /inference="alignment:Splign:2.1.0"
     exon            58..172
                     /gene="Cep162"
                     /gene_synonym="Qn1; RGD1307365"
                     /inference="alignment:Splign:2.1.0"
     exon            173..316
                     /gene="Cep162"
                     /gene_synonym="Qn1; RGD1307365"
                     /inference="alignment:Splign:2.1.0"
     exon            317..500
                     /gene="Cep162"
                     /gene_synonym="Qn1; RGD1307365"
                     /inference="alignment:Splign:2.1.0"
     exon            501..568
                     /gene="Cep162"
                     /gene_synonym="Qn1; RGD1307365"
                     /inference="alignment:Splign:2.1.0"
     exon            569..687
                     /gene="Cep162"
                     /gene_synonym="Qn1; RGD1307365"
                     /inference="alignment:Splign:2.1.0"
     exon            688..718
                     /gene="Cep162"
                     /gene_synonym="Qn1; RGD1307365"
                     /inference="alignment:Splign:2.1.0"
     exon            719..835
                     /gene="Cep162"
                     /gene_synonym="Qn1; RGD1307365"
                     /inference="alignment:Splign:2.1.0"
     exon            836..1027
                     /gene="Cep162"
                     /gene_synonym="Qn1; RGD1307365"
                     /inference="alignment:Splign:2.1.0"
     exon            1028..1109
                     /gene="Cep162"
                     /gene_synonym="Qn1; RGD1307365"
                     /inference="alignment:Splign:2.1.0"
     exon            1110..1383
                     /gene="Cep162"
                     /gene_synonym="Qn1; RGD1307365"
                     /inference="alignment:Splign:2.1.0"
     exon            1384..1645
                     /gene="Cep162"
                     /gene_synonym="Qn1; RGD1307365"
                     /inference="alignment:Splign:2.1.0"
     exon            1646..1776
                     /gene="Cep162"
                     /gene_synonym="Qn1; RGD1307365"
                     /inference="alignment:Splign:2.1.0"
     exon            1777..2004
                     /gene="Cep162"
                     /gene_synonym="Qn1; RGD1307365"
                     /inference="alignment:Splign:2.1.0"
     exon            2005..2145
                     /gene="Cep162"
                     /gene_synonym="Qn1; RGD1307365"
                     /inference="alignment:Splign:2.1.0"
     exon            2146..2258
                     /gene="Cep162"
                     /gene_synonym="Qn1; RGD1307365"
                     /inference="alignment:Splign:2.1.0"
     exon            2259..2364
                     /gene="Cep162"
                     /gene_synonym="Qn1; RGD1307365"
                     /inference="alignment:Splign:2.1.0"
     exon            2365..2491
                     /gene="Cep162"
                     /gene_synonym="Qn1; RGD1307365"
                     /inference="alignment:Splign:2.1.0"
     exon            2492..2655
                     /gene="Cep162"
                     /gene_synonym="Qn1; RGD1307365"
                     /inference="alignment:Splign:2.1.0"
     exon            2656..2760
                     /gene="Cep162"
                     /gene_synonym="Qn1; RGD1307365"
                     /inference="alignment:Splign:2.1.0"
     exon            2761..2973
                     /gene="Cep162"
                     /gene_synonym="Qn1; RGD1307365"
                     /inference="alignment:Splign:2.1.0"
     exon            2974..3626
                     /gene="Cep162"
                     /gene_synonym="Qn1; RGD1307365"
                     /inference="alignment:Splign:2.1.0"
     exon            3627..3768
                     /gene="Cep162"
                     /gene_synonym="Qn1; RGD1307365"
                     /inference="alignment:Splign:2.1.0"
     exon            3769..3867
                     /gene="Cep162"
                     /gene_synonym="Qn1; RGD1307365"
                     /inference="alignment:Splign:2.1.0"
     exon            3868..4002
                     /gene="Cep162"
                     /gene_synonym="Qn1; RGD1307365"
                     /inference="alignment:Splign:2.1.0"
     exon            4003..5441
                     /gene="Cep162"
                     /gene_synonym="Qn1; RGD1307365"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atggcccact attccaaagt agaccttgat gaagaatttg aacggtttat gaaggagctt
       61 tcagatgatt cttttgaaaa ttcaaatgaa acacctagcc agcctaacaa agacagaaag
      121 aagaaagaca cggccccttg gtggatagct gaagatggtt ttgaagatga tggactgctt
      181 gggacaaatg tgagctattt gaagacaaag aagacctatc aacctattac ggacatggaa
      241 gaggaaaatg aaaaagtcca gtttcttaag agcagtggaa cctccgtctt aagtgttgac
      301 agcttagaag ctaatgaatt ggttgcttct gagctccatc atagcactct aggtttgggc
      361 ctggacacat tagaagaaca agaggagaaa gagcagttct ttgccaggct tgagaaaggc
      421 ttgacatctt ctattgatta ttcaaaatta aatcaagaac tggattctga cgactctgca
      481 caattcagag ttttacatag atatcaaggt aatgtagaac cagctgaagg tggacgtgag
      541 aatgaatcag aacacaagga actgccagaa acatacagtg atgattttga agatgctgag
      601 gatactgatg aacctttgat tactaaagat gaagagaccc gtcccaaaga aaaccctgag
      661 tcaggaaaag gcagctttcc caaccaggag gaagagaaaa ctggcatgct ggctaatgtg
      721 gtgctgcttg attcttttga ctctgtcgag gatgttgacc ttaacaatca tgagagacca
      781 acccctaagg caaaggccct cccagaaatg gcaggcggtg aactagcaga aacaggtgtt
      841 tcttatggac aaagcagtgg tgacacagaa gccctgcacc aggcttacca tcacgtagct
      901 cattctctgg gagatacagg cgaaccaaga attgaggcta gccctgggca cagtgtcagg
      961 agctccgcaa aagatggtct tcaagaaaat gaggagtctt caaagaacat ctctaccacc
     1021 gagtctgatc ttcccacagt agaggagctg atgaagccta tcaggataga ttcctatggg
     1081 atcaggggtt ttgacttgca gcctgtcagc cttcagaaag cagtgggcag taaagaagca
     1141 gagtctgtga gctctttacc cctgacagtg aacacaaaca ccatgtctca agacactagg
     1201 cacgtgagcc catttcccca cgagcaggat gagagtgtgg ttctacacag gacagcgggg
     1261 gagggtgtgg gcagcagctg cccagccaca gaagagcatt tggacaaaat gtacctggag
     1321 attctgagga agaaaacatc tgttaatcct tcactgttac ctcaggacaa caaagctaac
     1381 cagacttcca ggtcccggct cagtgctagg gaagaggcgc ctgtcactag taaacaggtt
     1441 ccatgtaaga aggccagaag tgcacctcct ttgcctagga gaaagccaca gagtgggctg
     1501 tatgcatcag ctcggagctc aggctacagc aaacccagtt caccactcca gttcttttca
     1561 gctcttgaaa agaaaacgtc caaggataat acaaaaacta aaaatgtgag acccattccc
     1621 acctcaaatc aatttagaaa aagagaaata ctatctggaa caaagctcat caagcctgca
     1681 gctttgaaca aaccatcccc tcaccgtgaa ggcagcccag ctacacctaa gaggcctgaa
     1741 gacccctcag atgattcctt tgttcagcta cagactgaga ctttgggatc ctatggtggg
     1801 aacagagaaa aagaattact aatgttgaaa agagctcagg acgctgagga aaaatggagg
     1861 ggcgcccaag cgctaatcga gcaaattaaa atgacgttct ctgagaagga gaaggagttg
     1921 gagaacacag tggaaagcct aaagaggcag caggagagag agctcttcaa actgaaccaa
     1981 gaaaattaca ttcttcaagc caagttaagt agctttgaag aaacaagcag aaaacagagg
     2041 tggctacaat ttggagaaac atctgatcct ctcactgaag agaaactgaa acaaattcaa
     2101 aaagagatac aagaacaaga gacacttctt caaggctacc aacaggaaaa tgaaaggtta
     2161 tatagtcaag taaaagatct tcaggaacaa aataagaaaa atgaagagcg gatgtttaaa
     2221 gaaaatcaaa atttatttag tgagttggcc tctttaaaag aacagatgca caaaaatcat
     2281 tttctgcctc aagcagttga aaatatagaa cctaccaaaa accagagttt tacagatctt
     2341 ctagcagaat tacgggcagc acagaaagaa aaaaaccatc tgatggaaga catcaaaaga
     2401 ctgaagcaag acaaacaagc tcttgaagtg gacttggaaa gagtgaagag ggagagggac
     2461 caagccaaag atcaaatcgc ctataccaca ggtgaaaaat tatatgaaat aaagatttta
     2521 gaagaaacac ataagcagga agtcagtcgt ctacaaaagc ggttacagtg gtacgctgaa
     2581 aatcaggagc ttctggataa agacgcagcc cgactcagag aggccaatga agaaactgag
     2641 aggctgaaac tagagattga gaaactgaaa actgagtctg ggagcccagc aaatcagcag
     2701 aggctacgct caaaggagag agctcttgat gccaaaagaa ttcaggacct ggagcggcag
     2761 gttaaagaaa tggaagggat tctgaagaga aggtatccca actctttacc cgctttgata
     2821 ctggctgcct cggcagctgg tgattcagta gatagaaata cggtggactt tatggagaga
     2881 aggataaaaa agctagaagc tgatctagag ggcaaagatg aagaagccaa gaaaagcctt
     2941 cgcaccatgg aacagcagtt tcagaaaatg aagattcagt atgaacagcg gctggaagag
     3001 caggagcaga tgcttgccca caggcagagg gaagctccac agaaccagca taacagctca
     3061 tccaggctca aggcactcga gacagaactt gggggcataa aggaagccca ccagatcact
     3121 gtaagaaagc tggaggctga gatagatgtt cttaaacatc agaatgctca cttagagcac
     3181 aagaagaatg acaaggaaga tcaggacctc cagtccatag agttccaggt agagcaggcg
     3241 caggctaggg caaagctggc cagactcaat gaagaactgg cggcgaaagg gagagagata
     3301 caagacctta caaaaactgt ggagaggctc cagaaggaga gaaggatgat gctgtctagg
     3361 cagagtccca gaggcagaga agagatggct gccaaaaggc tgaagaaaga aattttgcat
     3421 ccaaatagtg gaaatgcaaa tgccttctct gaaacattgg gtgccaaact gtatcaccca
     3481 cacaccttca ctgactctca catttcggag gtcttagaag aaaactacag attgagaagt
     3541 gagctggagg ggttgacttt agagagagag aagctgaaga tggaatctga agctgccgtg
     3601 tgccaactgg aaagctccat gaaaagggtc aaggacgatg cagcagcaca cattgcatcc
     3661 ctcaaagcag ctcatgagag ggaaatagag aaactccttt gccaaaatgc agtagaaaat
     3721 tcctcttcca gagtagctga actgaatcgc aaaatcgcaa ctcaagaggt tcttctaaaa
     3781 catttccaag gtcaagttaa tgagctgcag ggcaaacagg aatccctttc actttctcaa
     3841 gttcgagaag aaatcctaca gaaacagatt acaaaactct tggaagaatt gaaagaagcc
     3901 aaagaaaacc acacaccaga gatgaaacat ttcatgggct tagaaaggaa gatcaagcag
     3961 atggagatga ggcataagca gagagagcag gagctccagc agataataca gcaaacacgc
     4021 caagtagtag aaactgagca aaacaaagaa gttgagaaat ggaaaagact tgcacagtta
     4081 aagaatcggg agctggacaa gttccgaaca gagttagact ccatactcga cgttcttcgg
     4141 gagctgcaca gacagggggt cgttgtcccg gttgctcttg cagatgaaga gagcacagca
     4201 aaagagtttt agtggaactt ggatctgcgt gaccgagttg gaagacaggt ggaaacgtgc
     4261 cgctgtcagg acagccacca cacagccatg cgtgaccacc ccacagtacc atgtcagaat
     4321 aaactgccat gaaccaacaa ggaagaacat acatcttgat tatcttactg aaaaccatta
     4381 aacatttgag atgaccttcg agcaggctcc gtaatgtcag aaggctgtga ctagcaaggt
     4441 ttatgtgaaa gggcgccctc ccaggctaca gtggaagaag ggagcgcacc tcctcagcca
     4501 tgtttcatag attaaatgcc tttccatttt ctgtctgaca gaaagtcagc tttctcatga
     4561 aacaggtagg tgaatgagag cctcgtgctg gggacagtct tatcgctggc tatagagtgt
     4621 cctcaggaac ttaggtgaca gttgagggcc ttctgcacct gatacaaagt gacaagaaat
     4681 ggtacagttt atgtgtctct tactggaggt caggtctagt aaatgacaat ccaaattttt
     4741 ggcagctcta aagttataaa caatatatga agtttttcct tttctgttaa aaaagaaata
     4801 ttatgtccaa tggaaaaaat taaaatgtgc ctaaaatagc tagtttattt tataatccca
     4861 tttgtacaag tagatcagaa atgtatatga tttctgtaaa tgaaagctgc tagcagtttt
     4921 tcaggtgtcc ctctggagat cgagctgtcc atggagacat gtgtggcgtc tgcactgggt
     4981 gcttctggtg atctgtgtgg gagaaagagg caggtaatct gaagacacct gagctccaga
     5041 cagaatgaca agaagtatgc acagtgaatt ttaattttta gtcagtttaa aatggaaagt
     5101 gaaactgtga actaagtctt tagagtatat tttacattat agcacatctc gatttagact
     5161 tcattccaac tgcccatacc agtaaatgca ggcctgaaat gaaatgcagt aaatgcttgc
     5221 aaagtagaat gtttcataag ggatgggtga acaaatctta gtgaactcat gaccaaaggt
     5281 tgtgatgtaa acctcctgtt tagtagaagc agtgtaattg tcctaatgcc aacattttat
     5341 catttgtttt ctttctgaga ggggagtgaa aaagcattat cactttcaat tttttcatgt
     5401 acggcatttc aaagttataa tacagataat ttattttatc a
//
