LOCUS       NM_001398953             727 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus centromere protein X (Cenpx), transcript variant
            2, mRNA.
ACCESSION   NM_001398953 XM_039087552
VERSION     NM_001398953.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 727)
  AUTHORS   Singh,T.R., Saro,D., Ali,A.M., Zheng,X.F., Du,C.H., Killen,M.W.,
            Sachpatzidis,A., Wahengbam,K., Pierce,A.J., Xiong,Y., Sung,P. and
            Meetei,A.R.
  TITLE     MHF1-MHF2, a histone-fold-containing protein complex, participates
            in the Fanconi anemia pathway via FANCM
  JOURNAL   Mol Cell 37 (6), 879-886 (2010)
   PUBMED   20347429
REFERENCE   2  (bases 1 to 727)
  AUTHORS   Yan,Z., Delannoy,M., Ling,C., Daee,D., Osman,F., Muniandy,P.A.,
            Shen,X., Oostra,A.B., Du,H., Steltenpool,J., Lin,T., Schuster,B.,
            Decaillet,C., Stasiak,A., Stasiak,A.Z., Stone,S., Hoatlin,M.E.,
            Schindler,D., Woodcock,C.L., Joenje,H., Sen,R., de Winter,J.P.,
            Li,L., Seidman,M.M., Whitby,M.C., Myung,K., Constantinou,A. and
            Wang,W.
  TITLE     A histone-fold complex and FANCM form a conserved DNA-remodeling
            complex to maintain genome stability
  JOURNAL   Mol Cell 37 (6), 865-878 (2010)
   PUBMED   20347428
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On Dec 28, 2021 this sequence version replaced XM_039087552.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360172.2132220.1,
                                           SRR22399484.1359129.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN12840130 [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-46                JAXUCZ010000010.1  106492592-106492637 c
            47-239              JAXUCZ010000010.1  106490576-106490768 c
            240-328             JAXUCZ010000010.1  106490278-106490366 c
            329-727             JAXUCZ010000010.1  106489796-106490194 c
FEATURES             Location/Qualifiers
     source          1..727
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q32.3"
     gene            1..727
                     /gene="Cenpx"
                     /gene_synonym="Stra13"
                     /note="centromere protein X"
                     /db_xref="GeneID:688314"
                     /db_xref="RGD:1590057"
     exon            1..46
                     /gene="Cenpx"
                     /gene_synonym="Stra13"
                     /inference="alignment:Splign:2.1.0"
     CDS             20..343
                     /gene="Cenpx"
                     /gene_synonym="Stra13"
                     /note="isoform 2 is encoded by transcript variant 2;
                     stimulated by retinoic acid 13"
                     /codon_start=1
                     /product="centromere protein X isoform 2"
                     /protein_id="NP_001385882.1"
                     /db_xref="GeneID:688314"
                     /db_xref="RGD:1590057"
                     /translation="MEESSGFRKELVSRLLHLHFRDPKTRGLRPQWGGEEWGTGREGR
                     GRLSCNLSFPPVSRDALQLMAEFLRIFVIEAAVRGVLQAQAEDLDVVDVDQLEKVLPQ
                     LLLDF"
     exon            47..239
                     /gene="Cenpx"
                     /gene_synonym="Stra13"
                     /inference="alignment:Splign:2.1.0"
     exon            240..328
                     /gene="Cenpx"
                     /gene_synonym="Stra13"
                     /inference="alignment:Splign:2.1.0"
     exon            329..727
                     /gene="Cenpx"
                     /gene_synonym="Stra13"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcgcactgag actgtggcca tggaggaaag cagtggcttc cggaaggaac tggtgagcag
       61 actactccat ttgcacttcc gagatcccaa gactagaggt ttgaggcccc agtggggtgg
      121 ggaagaatgg ggcacaggga gggaggggcg ggggaggctg tcctgtaacc tgtcttttcc
      181 tccagtcagc agggatgcac tgcagcttat ggcggagttc ctaaggatct ttgtaataga
      241 ggctgctgtc cgtggggtct tgcaggccca agcagaggac ctagatgttg tggatgtgga
      301 tcagctggag aaggtgctcc ctcagctgct cctggacttc tagagttccc ctcctgtggc
      361 ctgccatgtc tggtgaatcc atgccagcat ctacgtctag ttcctgagct ctgcagcttc
      421 cagaggatgg gaagatccca gcagctgttc cccttcctag ccattgcctc tcagagtcct
      481 tgtgagacag gtgcagggaa aggtgaacca gctgcctcca gacacagccc ctgccccgcc
      541 ccgccccacc ccacccccac ccttcattat aaataaacca gctgctggca gtacctcctt
      601 cttgccaccc tacatcaaag ctgctgtgca gccttttaac cacctgaccc ccacccccag
      661 gatgcctccc tgagctgtaa atttgttctt acaaagcaac atcaataaat caacaccatc
      721 tctctga
//
