LOCUS       NM_001008366            1865 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Rattus norvegicus centromere protein N (Cenpn), mRNA.
ACCESSION   NM_001008366 XM_341695
VERSION     NM_001008366.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1865)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1865)
  AUTHORS   Gerhard,D.S., Wagner,L., Feingold,E.A., Shenmen,C.M., Grouse,L.H.,
            Schuler,G., Klein,S.L., Old,S., Rasooly,R., Good,P., Guyer,M.,
            Peck,A.M., Derge,J.G., Lipman,D., Collins,F.S., Jang,W., Sherry,S.,
            Feolo,M., Misquitta,L., Lee,E., Rotmistrovsky,K., Greenhut,S.F.,
            Schaefer,C.F., Buetow,K., Bonner,T.I., Haussler,D., Kent,J.,
            Kiekhaus,M., Furey,T., Brent,M., Prange,C., Schreiber,K.,
            Shapiro,N., Bhat,N.K., Hopkins,R.F., Hsie,F., Driscoll,T.,
            Soares,M.B., Casavant,T.L., Scheetz,T.E., Brown-stein,M.J.,
            Usdin,T.B., Toshiyuki,S., Carninci,P., Piao,Y., Dudekula,D.B.,
            Ko,M.S., Kawakami,K., Suzuki,Y., Sugano,S., Gruber,C.E.,
            Smith,M.R., Simmons,B., Moore,T., Waterman,R., Johnson,S.L.,
            Ruan,Y., Wei,C.L., Mathavan,S., Gunaratne,P.H., Wu,J., Garcia,A.M.,
            Hulyk,S.W., Fuh,E., Yuan,Y., Sneed,A., Kowis,C., Hodgson,A.,
            Muzny,D.M., McPherson,J., Gibbs,R.A., Fahey,J., Helton,E.,
            Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M.,
            Madari,A., Young,A.C., Wetherby,K.D., Granite,S.J., Kwong,P.N.,
            Brinkley,C.P., Pearson,R.L., Bouffard,G.G., Blakesly,R.W.,
            Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J.,
            Myers,R.M., Butterfield,Y.S., Griffith,M., Griffith,O.L.,
            Krzywinski,M.I., Liao,N., Morin,R., Palmquist,D., Petrescu,A.S.,
            Skalska,U., Smailus,D.E., Stott,J.M., Schnerch,A., Schein,J.E.,
            Jones,S.J., Holt,R.A., Baross,A., Marra,M.A., Clifton,S.,
            Makowski,K.A., Bosak,S. and Malek,J.
  CONSRTM   MGC Project Team
  TITLE     The status, quality, and expansion of the NIH full-length cDNA
            project: the Mammalian Gene Collection (MGC)
  JOURNAL   Genome Res 14 (10B), 2121-2127 (2004)
   PUBMED   15489334
  REMARK    Erratum:[Genome Res. 2006 Jun;16(6):804. Morrin, Ryan [corrected to
            Morin, Ryan]]
REFERENCE   3  (bases 1 to 1865)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC085839.1.
            
            On Dec 16, 2004 this sequence version replaced XM_341695.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC085839.1, SRR8487231.114351.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1865
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /map="19q12"
     gene            1..1865
                     /gene="Cenpn"
                     /gene_synonym="Da2-27; Da2-4; RGD1310953"
                     /note="centromere protein N"
                     /db_xref="GeneID:361416"
                     /db_xref="RGD:1310953"
     exon            1..78
                     /gene="Cenpn"
                     /gene_synonym="Da2-27; Da2-4; RGD1310953"
                     /inference="alignment:Splign:2.1.0"
     exon            79..213
                     /gene="Cenpn"
                     /gene_synonym="Da2-27; Da2-4; RGD1310953"
                     /inference="alignment:Splign:2.1.0"
     exon            214..386
                     /gene="Cenpn"
                     /gene_synonym="Da2-27; Da2-4; RGD1310953"
                     /inference="alignment:Splign:2.1.0"
     CDS             216..1238
                     /gene="Cenpn"
                     /gene_synonym="Da2-27; Da2-4; RGD1310953"
                     /note="CENP-N"
                     /codon_start=1
                     /product="centromere protein N"
                     /protein_id="NP_001008367.1"
                     /db_xref="GeneID:361416"
                     /db_xref="RGD:1310953"
                     /translation="MDENVAEFLRRIILKIPLCEMKTILEAWDFLSEDQLQSINLKQR
                     KEFLAQEVILLCEDKCASLDDMALLDLMYTQFHRHQKLWNVFQMSKEPGGNDVDLFDM
                     EQFQSSFKRILQRALKNVTVSFRVYEKNSVWIRVAWGTQYSQPNQYKPTFVVYYPQTP
                     YVFISSCYLKSTVPLLHQALKVASKHHQMAQLDLRSRHLDSLTAIVFNEYDQTFENYN
                     STASWREGSLGLKTDLDSKIIHENTEEKVRIHRATQEAFGAYPQPQLEFAQYKLETKF
                     KSDVGGGILADRKEPLRCLVKFSSPHLLEALKSLAPAGIADTPLSPLLTCIPSKKMNY
                     FKIRDK"
     exon            387..432
                     /gene="Cenpn"
                     /gene_synonym="Da2-27; Da2-4; RGD1310953"
                     /inference="alignment:Splign:2.1.0"
     exon            433..492
                     /gene="Cenpn"
                     /gene_synonym="Da2-27; Da2-4; RGD1310953"
                     /inference="alignment:Splign:2.1.0"
     exon            493..572
                     /gene="Cenpn"
                     /gene_synonym="Da2-27; Da2-4; RGD1310953"
                     /inference="alignment:Splign:2.1.0"
     exon            573..749
                     /gene="Cenpn"
                     /gene_synonym="Da2-27; Da2-4; RGD1310953"
                     /inference="alignment:Splign:2.1.0"
     exon            750..851
                     /gene="Cenpn"
                     /gene_synonym="Da2-27; Da2-4; RGD1310953"
                     /inference="alignment:Splign:2.1.0"
     exon            852..915
                     /gene="Cenpn"
                     /gene_synonym="Da2-27; Da2-4; RGD1310953"
                     /inference="alignment:Splign:2.1.0"
     exon            916..1028
                     /gene="Cenpn"
                     /gene_synonym="Da2-27; Da2-4; RGD1310953"
                     /inference="alignment:Splign:2.1.0"
     exon            1029..1155
                     /gene="Cenpn"
                     /gene_synonym="Da2-27; Da2-4; RGD1310953"
                     /inference="alignment:Splign:2.1.0"
     exon            1156..1838
                     /gene="Cenpn"
                     /gene_synonym="Da2-27; Da2-4; RGD1310953"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cccgagcggc cattggcggc ttcgaaagcg cctcggcggg aagtgctgcc ggcgcggtgg
       61 gcgatgcgga ctggttagtt cttttaggaa tgccatgctc catatcactc aggattaaga
      121 atcttcggga gtgctaagga atgttacatc ttgcctttgg gcaccccatc ccgaatgtcc
      181 tgatccccga agctcatagc cgcatctagc ctgagatgga tgagaatgtt gccgagtttc
      241 tccggaggat catcctgaaa atccctctgt gtgagatgaa gaccatccta gaagcctggg
      301 actttttgtc tgaagaccaa ctgcagagca taaacttgaa gcagagaaag gaatttctgg
      361 cccaggaagt gattctgcta tgtgaggaca agtgtgcaag tcttgatgac atggcccttt
      421 tagacctcat gtatactcaa tttcatcggc accagaagct ttggaatgtc tttcagatga
      481 gtaaagaacc aggtggaaat gatgtggacc tttttgatat ggaacagttc caaagttcat
      541 ttaagagaat tcttcagaga gcattaaaaa atgttacggt cagcttcaga gtctacgaga
      601 agaattcggt gtggattcgg gttgcctggg gaacacagta ttcacagcca aaccagtaca
      661 agcccacgtt tgttgtgtat tatccccaga ccccatacgt cttcatttcc tcctgctatc
      721 tgaagagcac tgtgcccctt ctccatcagg cgctgaaagt cgctagcaaa caccatcaga
      781 tggcgcagct ggacctgaga agcaggcacc tggactcact cacggctatt gtgtttaacg
      841 agtatgacca gacctttgaa aattacaact ccacagcgtc ttggcgtgaa ggaagccttg
      901 gactgaagac agatttggat tcaaagatca ttcatgaaaa cacagaggaa aaagtgagaa
      961 tccacagagc cacgcaagag gcctttggag cctatcctca gccacagcta gagttcgcac
     1021 agtataagct ggaaaccaag ttcaagagtg acgtaggtgg gggcatcttg gctgacagga
     1081 aagagcccct ccggtgcctc gtcaagttct ccagcccaca tcttttggaa gcattgaaat
     1141 ccttagcacc agcgggtata gcagatacac cactttctcc actgctcacc tgcataccaa
     1201 gcaagaaaat gaattatttt aaaattagag ataaatgaaa tgcatttgtc tcagctttta
     1261 ttgcacatgc gattccagtt atagccggct agctcctgcg tatagccttg tgttttagga
     1321 accaatcctt ggcatgggaa attagtgttt ctaatgtaac tgttaggact gaatctgtcc
     1381 tccatatgtg tgtgcactct ctcttctgag tacagcagct gtgggcattt gacaagtgat
     1441 aaatgtgtgt gtgcacacac atgcacgatc agatcacaca cacactcgag gctgcagtga
     1501 tctcaaccct aggacacaca gaagtcaagc ataggcacag tggtgaatct gctgtccttt
     1561 ctcccactgc tgctgcttat cctcagaagt ctggtttctg tggaatctgt tacaccctcg
     1621 ttcacagata gaagaaccaa gaaactaccc aacccaaacc ccaaactagg agaatcaatg
     1681 gggagagctg gggctactac ccaaggctgc atatcgaatg gcttctttgt gtaaataact
     1741 tttctgttgt acgtattctt gtcacgatct ctgatccatg gaacactgca actgagtgcc
     1801 actgttacac tgatttgtga ataaagatac tgacaaacaa aaaaaaaaaa aaaaaaaaaa
     1861 aaaaa
//
