LOCUS       XM_039091875            3272 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus centromere protein C (Cenpc),
            transcript variant X1, mRNA.
ACCESSION   XM_039091875
VERSION     XM_039091875.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051349.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039091875.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3272
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3272
                     /gene="Cenpc"
                     /gene_synonym="Cenpc1"
                     /note="centromere protein C; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 197 ESTs, 3 long SRA reads, 1 Protein, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 83 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:305270"
                     /db_xref="RGD:1303061"
     CDS             267..2909
                     /gene="Cenpc"
                     /gene_synonym="Cenpc1"
                     /codon_start=1
                     /product="centromere protein C isoform X1"
                     /protein_id="XP_038947803.1"
                     /db_xref="GeneID:305270"
                     /db_xref="RGD:1303061"
                     /translation="MASFHLDHLKNYHRRFCRPSRAPNIPTKQGQNMLEILQDCFEEQ
                     NSTESLSCSTPKEKDIYVQSTGKERQASHSESVPISSRRKEASLQVPAKPSDPADEPV
                     QANEVHQKILSTDVVSKSTPDSTKTSSKGVKGHHGASDELYLPGGSPVVLLGARVSGS
                     QKAISSGGQKRVTSRRSADMQSSNTDIPFKTRKRLNFEDKVISNTAEIESSASQVEDS
                     ISEEQEGTSSETSQKRDDLSSEIQPQSKKSFSELYLETVNRKSKCSSVVRHTAAVPSP
                     PYPPNDMKLLEDEFIIDGPDRSFSSQPWVVIPRKGHHMPFPENIAVPQGKKSREKPHR
                     LSEKTLVSNTQTDKTGPVEEAQLSVEEKLGTTLTNEVENDCRSTENKTHSENAKKPSA
                     RKRTVKQKQRRPSKPNVAQELSMGQNETENRNMSKIGQDKLQINSKRNMEDHEEVRNE
                     PTPKKPVPALGNKKEKDSTQANKEKSRKKCFSRESKRKSVPKEVTLASRRGRRTSQHP
                     SEWWLVKPSEGSVDGNSSKENESSILYPNRKKQTKRNHVSENTEKKPVPSKRKKKEIS
                     SRELKSLNVKGSGGNDDISTSQRKPLQNIDADPTQKSLHCSGPTRGSEDQNSDMISQN
                     VHLKTRSEQHRSKTQMESTSNSEVCKHSVWEESGPSRFKNLEMPGRSNSEVGDEKDQK
                     SLDLKTRSSNMVPNRNLHHKLVLPSNSPNVRRSNRIRLKPLEYWRGERIDYQESSSGR
                     LVLEIVSPASESVKRKAKRNLDKVNKETNKKRIHLDNPTKTKIKVSLDIPLGDPFQAT
                     LAKDPETREIVPMGPHEEKGKQHVGQDILVFYVNFGDLLCTLHETPYMLTTGDSFYVP
                     SGNHYNIKNLLNVESCLLFTQIKR"
ORIGIN      
        1 aagggcggga atctgaaaac gcaagtaacg gccgctgtca agttggctga gctaggcttg
       61 tgcgcatgcg tggctcattt gaaaattttt ttccctccag gctggtctct gctgtttgtt
      121 cagggctgtc ttaagtgcag gtctggcggt tcttgggaag cctccgtccg caatctaacg
      181 ctagctgagt gatttttaac ctcctggaac cctggcctgc ttgggtttcc ctctcaggcc
      241 tccgttgggc ctagtgggcc ggaaccatgg cctcgttcca tctggatcat ctaaagaact
      301 accacagaag attttgccgg ccttccagag cacccaacat tcctacaaag caaggccaga
      361 acatgctgga aatcttacaa gattgttttg aagaacagaa ttctacagag tcattgtctt
      421 gttcaacacc taaagagaaa gacatttatg ttcagtcaac aggcaaagag cgccaagcat
      481 cacattcaga atcagttccg atttcttcaa ggaggaagga agcttctttg caagttcctg
      541 caaaaccaag tgaccctgct gatgaaccag ttcaggctaa tgaagttcat cagaaaattc
      601 tgtctactga tgtggtctcc aaaagtacac cagactcaac caaaacatca agtaaaggag
      661 taaaaggtca ccatggtgcg tctgatgaat tgtacttacc tggtggctcc cctgtggttc
      721 ttctgggtgc aagagtgtcc gggtcacaga aagctatttc atctggtggc caaaaaagag
      781 tgacttcaag gcgttcagca gatatgcagt cttcaaatac agacattcct tttaaaacca
      841 ggaaaaggct aaacttcgaa gataaagtta tttcgaacac agcagaaata gagagcagtg
      901 catcacaagt agaggatagc atatccgagg aacaagaagg gacatcatca gaaacttctc
      961 agaagagaga cgatctgagc tctgaaattc aaccacaatc taaaaagagc ttttcagagt
     1021 tgtatttaga aactgtcaac aggaaaagta aatgcagttc tgttgttagg cacacagcag
     1081 cagttccatc tcctccgtat cctccgaatg atatgaaatt attagaagat gaatttatta
     1141 ttgatgggcc agatagaagc ttttcaagtc aaccttgggt ggtgatacca aggaaaggcc
     1201 accacatgcc atttcctgaa aacattgcag tgcctcaagg taagaagtca agagagaaac
     1261 ctcatcgtct gtccgagaag actttggtaa gtaacacaca gactgataag actggcccag
     1321 tagaggaagc tcagctctct gttgaggaaa aactgggaac tactttgaca aacgaggtgg
     1381 aaaatgattg tagatctaca gaaaataaaa cgcactctga gaatgcgaaa aaaccatctg
     1441 cacggaaaag gactgtgaaa cagaagcaga gaagaccatc taagcctaac gtagctcaag
     1501 agctcagtat gggacagaat gaaactgaaa ataggaatat gtcaaaaatt ggccaagaca
     1561 agttacaaat aaattcaaaa agaaatatgg aagaccatga agaggtgagg aacgagccta
     1621 cccccaagaa acctgtgcct gctcttggaa ataagaaaga aaaggacagc acccaagcta
     1681 ataaggaaaa atctagaaag aaatgttttt ctagagagtc caagaggaaa tctgttccca
     1741 aagaagtaac tttggcttcc aggagaggtc gtagaacttc tcagcatccg tctgagtggt
     1801 ggttggtaaa accaagtgaa ggttctgttg atggaaattc ttcaaaggag aatgaatcat
     1861 caattttata tccaaataga aaaaaacaga ctaagagaaa tcacgtatct gagaatactg
     1921 agaagaaacc tgttccatcg aaaagaaaga agaaagagat cagctcaaga gaactgaagt
     1981 ctttaaatgt aaagggttct ggaggaaatg atgatatttc tacttcccag aggaagccgt
     2041 tgcaaaacat tgacgcagat ccaactcaga agagccttca ttgttctgga cctaccagag
     2101 gctctgaaga tcaaaacagt gatatgatat cacagaatgt tcatttaaag actcgtagtg
     2161 agcaacatag aagcaagaca caaatggaat ctacttcaaa ttcggaagtg tgtaaacatt
     2221 cagtgtggga agaaagtgga ccttccaggt tcaagaatct tgaaatgcct ggacgcagta
     2281 attctgaagt gggtgacgaa aaggaccaga agagtttgga tttgaaaaca agaagttcta
     2341 atatggtacc gaataggaat ttacaccaca aattagtatt gccctccaac tcaccaaatg
     2401 ttcgtagatc taatagaata cgtttgaaac ctctggaata ttggcgaggg gaacgaatag
     2461 attatcaaga aagctcatca ggaagacttg tgcttgaaat agtgtcccca gcttcagaat
     2521 cagtgaaaag aaaggccaaa agaaatctgg acaaagtcaa caaagaaact aacaagaaac
     2581 ggatccatct tgataaccct acaaagacta agataaaggt gagtctggat attcctctgg
     2641 gagatccctt ccaggcaaca ttggcaaagg acccggaaac aagagagatt gtccccatgg
     2701 gaccccatga agaaaaagga aaacagcatg ttggtcaaga tatattagtt ttttatgtta
     2761 actttggtga ccttctatgt acattacatg aaacacctta tatgctaacg accggggatt
     2821 cattctatgt tccttcaggt aatcattaca acattaaaaa cctcttgaat gtggaaagtt
     2881 gtcttctttt tactcaaata aaaaggtgaa ataaaagtgt atgtatataa aatagattgt
     2941 ttatatgtaa atttttgtaa ctgattattt taaagtaaaa tttttgttta gttttgcatt
     3001 agttaatcat tttatactcc ttgttaaaca tttcatagtc ttatatatgt cttttggttt
     3061 ttcctcgagt gtaaatactg tgcttactgt tgaccatttt gttggtgttg ctttgataat
     3121 attgaaaaaa aaagaacaac aaaagaaact aaaatcactg ctcccacaat ataatatcca
     3181 tctgctatca aagagctgat tgatgtgtcc attcatttgc tgtagttggt tccaaatatc
     3241 aattgtaaat cattgatcat taaataatcg aa
//
