LOCUS       NM_001413529            2869 bp    mRNA    linear   ROD 22-MAR-2023
DEFINITION  Rattus norvegicus CUGBP, Elav-like family member 6 (Celf6),
            transcript variant 1, mRNA.
ACCESSION   NM_001413529 XM_008766227
VERSION     NM_001413529.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2869)
  AUTHORS   Dougherty JD, Maloney SE, Wozniak DF, Rieger MA, Sonnenblick L,
            Coppola G, Mahieu NG, Zhang J, Cai J, Patti GJ, Abrahams BS,
            Geschwind DH and Heintz N.
  TITLE     The disruption of Celf6, a gene identified by translational
            profiling of serotonergic neurons, results in autism-related
            behaviors
  JOURNAL   J Neurosci 33 (7), 2732-2753 (2013)
   PUBMED   23407934
REFERENCE   2  (bases 1 to 2869)
  AUTHORS   Ladd AN, Nguyen NH, Malhotra K and Cooper TA.
  TITLE     CELF6, a member of the CELF family of RNA-binding proteins,
            regulates muscle-specific splicing enhancer-dependent alternative
            splicing
  JOURNAL   J Biol Chem 279 (17), 17756-17764 (2004)
   PUBMED   14761971
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JACYVU010000198.1.
            
            [WARNING] On Apr 3, 2024 this sequence was replaced by
            NM_001413529.2.
            
            On Nov 3, 2022 this sequence version replaced XM_008766227.3.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132262,
                              SAMD00132272 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            RefSeq Select criteria    :: based on conservation, expression,
                                         longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-336               JACYVU010000198.1  21788596-21788931
            337-419             JACYVU010000198.1  21792489-21792571
            420-468             JACYVU010000198.1  21801125-21801173
            469-597             JACYVU010000198.1  21814452-21814580
            598-677             JACYVU010000198.1  21814670-21814749
            678-821             JACYVU010000198.1  21814885-21815028
            822-954             JACYVU010000198.1  21815128-21815260
            955-1104            JACYVU010000198.1  21815342-21815491
            1105-1167           JACYVU010000198.1  21815703-21815765
            1168-1248           JACYVU010000198.1  21816032-21816112
            1249-1392           JACYVU010000198.1  21816202-21816345
            1393-1548           JACYVU010000198.1  21817316-21817471
            1549-2869           JACYVU010000198.1  21818051-21819371
FEATURES             Location/Qualifiers
     source          1..2869
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q24"
     gene            1..2869
                     /gene="Celf6"
                     /gene_synonym="Brunol6"
                     /note="CUGBP, Elav-like family member 6"
                     /db_xref="GeneID:300758"
                     /db_xref="RGD:1310451"
     exon            1..336
                     /gene="Celf6"
                     /gene_synonym="Brunol6"
                     /inference="alignment:Splign:2.1.0"
     CDS             75..1520
                     /gene="Celf6"
                     /gene_synonym="Brunol6"
                     /EC_number="3.2.1.52"
                     /note="isoform 1 is encoded by transcript variant 1;
                     CUG-BP- and ETR-3-like factor 6"
                     /codon_start=1
                     /product="CUGBP Elav-like family member 6 isoform 1"
                     /protein_id="NP_001400458.1"
                     /db_xref="GeneID:300758"
                     /db_xref="RGD:1310451"
                     /translation="MAAAPGGSAPPAGPGPRLAFSTADSGVGMSGLNPGPAVPMKDHD
                     AIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALK
                     AQSALHEQKTLPGMNRPIQVKPAASEGRGEDRKLFVGMLGKQQGEEDVRRLFQPFGHI
                     EECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQGLHGSRTMTGASSSLVVKLADTDRER
                     ALRRMQQMAGQLGAFHPAPLPLGACGAYTTAILQHQAALLAAAQGPGLGQVAAVAAQM
                     QHVAAFSLVAAPLLPAAANTSPSGNGPGALPGLPAPMGVNGFGSLNPQTNGQPGSDSL
                     YNNGLSPYPAQSPGVADPLQQAYVGIHHYAAAYPSAYAPVSTAFPQQPSALPQQQREG
                     PEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSA
                     QTAIQAMNGFQIGMKRLKVQLKRPKDANRPY"
     exon            337..419
                     /gene="Celf6"
                     /gene_synonym="Brunol6"
                     /inference="alignment:Splign:2.1.0"
     exon            420..468
                     /gene="Celf6"
                     /gene_synonym="Brunol6"
                     /inference="alignment:Splign:2.1.0"
     exon            469..597
                     /gene="Celf6"
                     /gene_synonym="Brunol6"
                     /inference="alignment:Splign:2.1.0"
     exon            598..677
                     /gene="Celf6"
                     /gene_synonym="Brunol6"
                     /inference="alignment:Splign:2.1.0"
     exon            678..821
                     /gene="Celf6"
                     /gene_synonym="Brunol6"
                     /inference="alignment:Splign:2.1.0"
     exon            822..954
                     /gene="Celf6"
                     /gene_synonym="Brunol6"
                     /inference="alignment:Splign:2.1.0"
     exon            955..1104
                     /gene="Celf6"
                     /gene_synonym="Brunol6"
                     /inference="alignment:Splign:2.1.0"
     exon            1105..1167
                     /gene="Celf6"
                     /gene_synonym="Brunol6"
                     /inference="alignment:Splign:2.1.0"
     exon            1168..1248
                     /gene="Celf6"
                     /gene_synonym="Brunol6"
                     /inference="alignment:Splign:2.1.0"
     exon            1249..1392
                     /gene="Celf6"
                     /gene_synonym="Brunol6"
                     /inference="alignment:Splign:2.1.0"
     exon            1393..1548
                     /gene="Celf6"
                     /gene_synonym="Brunol6"
                     /inference="alignment:Splign:2.1.0"
     exon            1549..2869
                     /gene="Celf6"
                     /gene_synonym="Brunol6"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aggccctcgc cagcagtcca gggaagggac ggcgggacag gcgggacgct cgggagggcg
       61 gacggggcgg ggacatggcc gcggcgccag gagggtctgc gccgcccgcc ggccccggcc
      121 cgcgcttggc tttcagcacc gcggacagcg gcgtcggcat gagcgggctg aacccaggtc
      181 ccgctgtgcc catgaaggac cacgacgcca tcaagctctt cgtggggcag atcccgcggg
      241 gcttggacga gcaggacctc aagccgctgt tcgaggagtt cggccgcatc tacgagctga
      301 cggtactgaa ggaccggctc accggcctcc acaaaggctg tgccttcctc acctactgcg
      361 cccgagactc tgctctcaaa gcccagagtg ccctgcacga gcagaagacc ctgccaggga
      421 tgaatcgtcc gatccaagtg aagccggctg ccagtgaggg ccgaggagag gaccggaagc
      481 tgtttgtggg aatgttgggc aagcagcagg gtgaggagga tgtcagacgt ctgttccagc
      541 ccttcggcca tatcgaggag tgcactgtcc tgcggagtcc cgatggtacc agtaaaggct
      601 gtgcctttgt gaagttcgga agtcaagggg aagctcaagc tgctatccag ggactacacg
      661 gaagccggac aatgacgggc gcctcatcca gcctggtggt gaagttggca gacactgacc
      721 gggagcgcgc gctgcgaagg atgcagcaaa tggctggcca gctgggcgcc ttccatcccg
      781 caccgctgcc cctcggggcc tgtggcgcct ataccactgc gatcctgcag caccaggcag
      841 cgttgctggc cgcagcgcag ggtcccgggt taggccaggt ggctgcggtg gccgcccaga
      901 tgcagcacgt ggcggccttc agcctggtgg ctgctccgct gttgcctgct gcagccaata
      961 catcgcctag tggtaatggc cctggtgcac tccctggcct tccagcgccc atgggggtca
     1021 atggattcgg ctccttgaac ccccagacca acggacagcc aggctccgac tcgctctata
     1081 acaacgggct ttccccttac ccagcccaga gccccggtgt ggctgacccc ctgcagcagg
     1141 cctacgttgg gatacatcac tatgcagcag cctatccctc ggcctatgcc ccagtgagca
     1201 cagcttttcc ccagcagcct tcagctctgc ctcagcaaca aagagaaggt cctgaaggct
     1261 gtaacctctt catctatcac ctgcctcagg agtttgggga tgcggaactc atacagacat
     1321 tcctgccctt cggagctgtt gtctctgcca aagtctttgt ggaccgtgcc accaaccaga
     1381 gcaagtgttt tgggtttgtt agtttcgaca atccaaccag tgcccagact gccatccagg
     1441 ccatgaatgg ctttcaaatc ggcatgaaga ggctcaaggt ccagctaaag agacctaagg
     1501 atgccaacag gccttactga tctgcgcttg ctgaccagtc acagacagaa actgaagagt
     1561 gaagaaagga aacggaaaag cacagaaatg ctggatcggc ccttctggaa ggagtggcgt
     1621 ggacagaggt ggatcggacc cagggctggc gcctggggct caggccactc atcatgtggg
     1681 ttgttccatg gagcgctcag gctggcaggg caaccagtgc tggctgagga tcgactgatc
     1741 taagggaacc agcagagagc ctcgggggtg ccaagggctt ctcagcaagg gaagcccaga
     1801 cttacttcgt tcaaaatcat atcattcctt agtgtttagg gaccaaagga ctattgcttt
     1861 tttttaagaa tatatatata tctatataaa ttaaaacaaa gaaaaaaaaa caggagacaa
     1921 aaaaaaaaaa gacagtatag agtctcataa aagctgcctt taaatatccc caggagacag
     1981 ggtgaaagag acccttgata gccccagcct aggcagagga ggctgtggaa agattgtcct
     2041 gtgtctcgtc ccttcttaag ctactccctt accccaccct ttaagaatat gataaaggac
     2101 gtgaagtcta ggctcatatt caagcaacaa gagggttatg gaagcagtga gcccatggcc
     2161 ccacaacgcg cggatagtat ccctgaagag gcctggggag gagcttaggc ctgctctggt
     2221 ctttgctaca ttaggaggcc cccagccatc agaagtggga acctgttttt ctttcctgac
     2281 accttttctt gtggagccag agcctcccca ggtagggaga gagagagaga gagagagaga
     2341 gagagagaga gagagagaga gagagagaga gcgagccttt ccttcccagg ccacgtagac
     2401 caaggcctcg cctttggctg agctgagaca cctcctgttt cccctcccct tgcgactccc
     2461 cccccccccc ccgtgtcccc ttgctccagg ccaccttctg tctcttagtc taagtttgcc
     2521 cacttgtaaa gtagattcaa gatctatgta gagggctgtg acaacagacg tggaaggctt
     2581 gctgctgtaa atactgccac tgagaagggg atcattttca ctatgtagaa gcttcagaat
     2641 tagaggtccc tctctaccca ggacctggga gggaagtaga tgttttgcca aaattctaat
     2701 tcattccttt aaaaaagtac atctttccta tgcaagcgtg tctcccatgt gcttacccaa
     2761 ggtgctttta gatggtgagc agtgttcagc ttagaagtgg tgtgtgctgt ctgtctgtcc
     2821 ttgtttgtct gtctgtacag tgggtgccat ataaagctga tcaacggtg
//
