LOCUS       NM_001135603            4384 bp    mRNA    linear   ROD 23-MAR-2023
DEFINITION  Rattus norvegicus CUGBP, Elav-like family member 5 (Celf5), mRNA.
ACCESSION   NM_001135603 XM_001075513 XM_234928
VERSION     NM_001135603.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4384)
  AUTHORS   Ladd AN, Charlet N and Cooper TA.
  TITLE     The CELF family of RNA binding proteins is implicated in
            cell-specific and developmentally regulated alternative splicing
  JOURNAL   Mol Cell Biol 21 (4), 1285-1296 (2001)
   PUBMED   11158314
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JACYVU010000177.1.
            
            [WARNING] On Apr 3, 2024 this sequence was replaced by
            NM_001135603.3.
            
            On Feb 10, 2021 this sequence version replaced NM_001135603.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132261,
                              SAMD00132263 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-224               JACYVU010000177.1  3384773-3384996
            225-307             JACYVU010000177.1  3391332-3391414
            308-359             JACYVU010000177.1  3396750-3396801
            360-488             JACYVU010000177.1  3397347-3397475
            489-568             JACYVU010000177.1  3399120-3399199
            569-715             JACYVU010000177.1  3400284-3400430
            716-857             JACYVU010000177.1  3401180-3401321
            858-1004            JACYVU010000177.1  3401400-3401546
            1005-1067           JACYVU010000177.1  3402378-3402440
            1068-1148           JACYVU010000177.1  3403807-3403887
            1149-1251           JACYVU010000177.1  3405658-3405760
            1252-4384           JACYVU010000177.1  3406138-3409270
FEATURES             Location/Qualifiers
     source          1..4384
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q11"
     gene            1..4384
                     /gene="Celf5"
                     /gene_synonym="Brunol5; RGD1565016"
                     /note="CUGBP, Elav-like family member 5"
                     /db_xref="GeneID:314647"
                     /db_xref="RGD:1565016"
     exon            1..224
                     /gene="Celf5"
                     /gene_synonym="Brunol5; RGD1565016"
                     /inference="alignment:Splign:2.1.0"
     CDS             80..1267
                     /gene="Celf5"
                     /gene_synonym="Brunol5; RGD1565016"
                     /note="CUG-BP- and ETR-3-like factor 5"
                     /codon_start=1
                     /product="CUGBP Elav-like family member 5"
                     /protein_id="NP_001129075.1"
                     /db_xref="GeneID:314647"
                     /db_xref="RGD:1565016"
                     /translation="MKDLDAIKLFVGQIPRHLHEQDLKPLFEQFGRIYELTVLKDPHT
                     GVHKGCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSENRGGRDRKLFVGM
                     LNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQ
                     TMPGASSSLVVKFADTDKERTLRRMQQMVGQLGILTPSLTLPFSPYSAYAQALMQQQT
                     TVLSTSGSYLSPGVAFPPCHIQQIGTVSLNGLPATPIAPASGLHSPPLLGTAAVPGLM
                     TSIPSGFPGVLPFPGSHPALETVYANGLVPYPAQSPTVAETLHPAFSGVQQYTAMYPT
                     AAIAPVAHSVPQPPHLLQQQREGVWRHGADPDVPPLRQYHLLQGVYGSGYQPEQVFRI
                     REL"
     exon            225..307
                     /gene="Celf5"
                     /gene_synonym="Brunol5; RGD1565016"
                     /inference="alignment:Splign:2.1.0"
     exon            308..359
                     /gene="Celf5"
                     /gene_synonym="Brunol5; RGD1565016"
                     /inference="alignment:Splign:2.1.0"
     exon            360..488
                     /gene="Celf5"
                     /gene_synonym="Brunol5; RGD1565016"
                     /inference="alignment:Splign:2.1.0"
     exon            489..568
                     /gene="Celf5"
                     /gene_synonym="Brunol5; RGD1565016"
                     /inference="alignment:Splign:2.1.0"
     exon            569..715
                     /gene="Celf5"
                     /gene_synonym="Brunol5; RGD1565016"
                     /inference="alignment:Splign:2.1.0"
     exon            716..857
                     /gene="Celf5"
                     /gene_synonym="Brunol5; RGD1565016"
                     /inference="alignment:Splign:2.1.0"
     exon            858..1004
                     /gene="Celf5"
                     /gene_synonym="Brunol5; RGD1565016"
                     /inference="alignment:Splign:2.1.0"
     exon            1005..1067
                     /gene="Celf5"
                     /gene_synonym="Brunol5; RGD1565016"
                     /inference="alignment:Splign:2.1.0"
     exon            1068..1148
                     /gene="Celf5"
                     /gene_synonym="Brunol5; RGD1565016"
                     /inference="alignment:Splign:2.1.0"
     exon            1149..1251
                     /gene="Celf5"
                     /gene_synonym="Brunol5; RGD1565016"
                     /inference="alignment:Splign:2.1.0"
     exon            1252..4384
                     /gene="Celf5"
                     /gene_synonym="Brunol5; RGD1565016"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cggccgcacc acagctcctg cccgggccag gccggtgggc ggcagcgggc ccgagcgccc
       61 cggggcgcgg cccgacggca tgaaggacct ggacgccatc aagctcttcg tgggccaaat
      121 cccgcgtcat ttgcacgaac aggacctcaa gccgctattt gagcagttcg gccgcatcta
      181 cgagctcaca gtgctcaaag acccgcacac cggcgtgcac aaaggctgtg ccttcctcac
      241 gtactgcgcc agggactctg ccatcaaagc tcagacggcc ttgcacgagc agaagaccct
      301 gccagggatg gcgcggccga tccaggtgaa accggcagac agtgagaacc gtggaggtag
      361 ggaccggaag ctgttcgtgg gcatgctcaa caagcagcag tcggaggaag acgtgctcag
      421 gctcttccag ccctttggcg ttatagacga gtgcacagtg ctgcgaggac ccgatggcag
      481 cagcaaaggc tgtgccttcg tgaagttctc ttcccacaca gaggcccagg ctgccatcca
      541 cgccttacat ggcagccaga caatgccggg agcttcctcc agcctggtgg tcaaattcgc
      601 cgacacggac aaagagcgga cactacggcg tatgcagcag atggttggcc agctgggcat
      661 cctgacgcca tccctcaccc tgcccttcag cccctacagt gcctacgccc aggctctcat
      721 gcagcaacag acaacagtgt tgtccacctc tggcagctac ctgagccccg gtgtggcctt
      781 ccctccctgc cacattcagc agattggcac tgtcagcctt aatggtctgc ctgctacacc
      841 catcgcgcct gcctctgggc tacactcacc cccactgctg ggcactgccg ccgtccctgg
      901 cctgatgaca tccattccca gtggcttccc aggtgttctg ccctttcccg ggagccaccc
      961 tgccctggag accgtgtatg ccaatggcct tgtgccctac ccagctcaga gccccactgt
     1021 ggcagagacc ctccatcctg ccttctctgg agtccagcag tacacagcca tgtatcccac
     1081 cgcggccatc gcgcccgtgg cacacagcgt tccgcagcct ccgcacctcc tgcagcagca
     1141 gcgtgaagga gtttggagac acggagctga cccagatgtt cctccccttc ggcaatatca
     1201 tctcctccaa ggtgtttatg gatcgggcta ccaaccagag caagtgtttc ggattcgtga
     1261 gctttgacca cccagccagc gcgcaggcgg ccatccaggc catgaacggc tttcagattg
     1321 gtatgaagag gctgaaggtg cagctgaaga gacccaaaga cccaggacac ccgtactgac
     1381 cacgcccaca gcccctctgc gctgtgggtg tggccccagg tgagccgcca ggcggccctg
     1441 tgctccgccc agccctggcg tcattcaacc ctcctcccat cccaagctta ctctccaaat
     1501 cctgggggcg ggagtgacac tccaaaaggc caactgaggg ttcaaaccct cccccatcac
     1561 ctgtggcttg ggtggcagag agggtgggat tagggtgggg aaactagggt gagagaaagt
     1621 taggaggttc cacacaggtg acttccttcc cagggaaagt tttgaaggat gaataggagt
     1681 tcactttagt gaactggttt ggggcttgtg gtctggggtg caggatgtga tgggcggggc
     1741 ttctatccca tcctgtgaag ctgttccccc agccgagaag ccctaatcca gagaaggacg
     1801 tgccgcacac acccagctct gtgtccctac agttgaactt ggaatgccca gttaagcatg
     1861 gcccaggact gaagcagagg aaatggggac acatcatagc cttgtggtcc cccacctctg
     1921 tccccaccag ctctcatgga ccctgagagt cctgtcttct aatatcatgc ccagtgggtt
     1981 aacaaaaccc agagtgccgg ttataatctc acaaaacaaa cgacacaaaa ccaaataccc
     2041 aaacaaacaa gcaaaaaacc ccccaaaagt caatttcccc ttcaacattc tcagcacttt
     2101 ctttgggact ggactgattt taaaaggtga acacaactgc acaatggcgg cgccgtggag
     2161 gtgacagccc agctgtccaa tagcagcggc tacagagcac ccaggagtac tttttcttcc
     2221 tttttttctt tctttcatca cccagcccag ggcctggtag agatcgacag tctttaatcc
     2281 ttcggtgttt tttgtccgtt acctgggtct tttgggcttt atctattttg gcttcgatta
     2341 ggaaacccat caatcacgta gaaatccccg gactgctgcc gtattttcac tttcaaccca
     2401 gtgtcctgca ggccatctgc tctgggctgg tgagagaagg tccatgtgag gagcaaatgt
     2461 ccccagactg atggtgactg tcaggaactg ttgttttgaa aacactgggg ttttcttgcc
     2521 aggacaaagt ggggcactgt gttctgcgcc ccgctcccct tgcttctcct caatgtcccc
     2581 ctatcctccc caggttgagc ggttcccgct tccaaccgct ccaggacttt tatgtaaatt
     2641 acagccaagt ttggacacca gctctcccag tgaccccctt cctccacctg tccccgactt
     2701 gtggcccccc aaattccgaa gccaccaaaa gccacttgag gttcagaaga ctccgtggtg
     2761 tgttgtgggg cagggaacag gagtctgagc ccgggtttga ggggcctata cactgccaat
     2821 aaccacatgc ccctcaactt ggggacaccc ccacgtgact cagaggcttt cctggtcagc
     2881 cagtatcccc cttagccagg tttcccctcc cccgcccact tcctattccc gtagctgtgc
     2941 gtagacatgt gcgcaccata gactatatat ttttggagaa tgaaccacag tggccaaact
     3001 ccgtcaagga ggtggctctg agccggccaa tcagcggggg accaaggaca gaccagctga
     3061 ggccggctgg acgccgccct gactggacac caaaccagga ccccgccaac accatatacc
     3121 tccagttttt ggggtctcca cggttgctgc ccccgccctg cccctcccac tttcatagcc
     3181 ttacttgggt gaccaggtgt ctttagcttc ctgccagggg agactcctgt cccccactgc
     3241 ccacccaccc agatctctct ctctctctct ctctctctct ctctctctct cacacacaca
     3301 cacacacaca cacacacaca cacacacaca cacacacaca cacacacaca cggtcctcca
     3361 atcaccagct gtaaactgaa ggtctcatac ccgaggtcac cgtgagtcag atgtggccac
     3421 accggacccg gttgctgacc ccgcaggctc cacactttcc ttttctacgt atcacctacc
     3481 tatcatctat ctatcatcat gtcggtggtc tttttctgag tgagtgccaa caagaccact
     3541 gagaagggca tagagggagg ggatgtgggg actcatgata atccgccttt gattcctagt
     3601 tggaggtttg ggaagcctgg tgagagagcc cacctcttgt atattaccca gcctgcccac
     3661 acacccacca caaagcacag agtcgttaat ttggacatcc caccaagcag gggagggggg
     3721 tcctgggggg gggtccagat cccttccgac tggtccaaaa gcaaacaaaa gagataaaag
     3781 ttttttaagg tctaaaaaac atgtaaaaac aagcaaaaaa aaaaaaaaaa acccttttct
     3841 tttctaccaa aatgtttgtt gactgaccta aactaaaggg gggttaaaaa accaaaaaaa
     3901 aacccaccct gattctgccc accttgtttc tcgtctccgg tttgatgatc ccttgttctg
     3961 aacgtaacac agtaagactt actgtattac gtagtgtgcg aacgtgtgtg tccggggtgt
     4021 cgctgtgtcc ccccaccccc acgcaagttg cccgctgagt gcgtgctggc gtgcgctggc
     4081 gtgcgcactg tctagttcat gtttacgagc tgtaaatacc atttttatac tccacacaag
     4141 agaccctacg tgatttgtac aacgggctta gtttctgcta cgatgaattt cgtgaaattt
     4201 caaacttcaa ttttggagat gagcagaggg ggagccaaga gtggagaggg atgtggggtt
     4261 tgagtctcgc gcctcctatt cgtgagcgag cttctcaaca tcaaatcact tctccttggt
     4321 ctggaaaaga agagacaaaa accctaaaag tttatttaat aaaagtttta cttgttaaca
     4381 ggga
//
