LOCUS       XM_039096894            4222 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus CUGBP, Elav-like family member 4
            (Celf4), transcript variant X15, mRNA.
ACCESSION   XM_039096894
VERSION     XM_039096894.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051353.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039096894.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4222
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4222
                     /gene="Celf4"
                     /gene_synonym="Brunol4"
                     /note="CUGBP, Elav-like family member 4; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 41 ESTs, 12 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     31 samples with support for all annotated introns"
                     /db_xref="GeneID:307540"
                     /db_xref="RGD:1307630"
     CDS             523..2127
                     /gene="Celf4"
                     /gene_synonym="Brunol4"
                     /codon_start=1
                     /product="CUGBP Elav-like family member 4 isoform X15"
                     /protein_id="XP_038952822.1"
                     /db_xref="GeneID:307540"
                     /db_xref="RGD:1307630"
                     /translation="MYIKMATLANGQADNASLSTNGLGSSPGSAGHMNGLSHSPGNPS
                     TIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTY
                     CERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGDRKLFVGMLNKQQSEDDVRRL
                     FEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKF
                     ADTDKERTMRRMQQMAGQMGMFNPMAIPFGAYGAYAQALMQQQAALMASVAQGGYLNP
                     MAAFAAAQMQQMAALNMNGLAAAPMTPTSGGSTPPGITAPAVPSIPSPIGVNGFTGLP
                     PQANGQPAAEAVFANGIHPYPAQSPTAADPLQQAYAGVQQYAGPAAYPAAYGQISQAF
                     PQPPPMIPQQQREGPEGCNLLIYHLPQEFGDAELMQMFLPFGRHPVPSRCQAPSCQGG
                     QCAISSSARRLRELRQPGQRPDRHPGHERLPDRHEEAQGAAEAAQRRQSPVLSAGGSV
                     PRGRPGLAQGQSNLPQSRAELGIKFT"
ORIGIN      
        1 cctcgccgcc cccacccctg gtctggcagg gaacttgaac cggtccagcc tgtttaaacc
       61 gaaaggacag agatcctgtc tgttcaatgt aaaaaaaaaa aaaaaagaag aagaaaaaaa
      121 atcacatcag accgagagag agagaaagag agagagagag agagagagag agagagagag
      181 agagagagag agagagaaga caggagagga gagaggagga gagagaagag gaagagagag
      241 aagagagaga aatagaacga gagcccagag cagatcaagg tgtaggaaac caaaggggag
      301 agaacccgag tgtgtgcgtg tgtgtgtgag tgtgtgtgag tgtgtgtgtg tgtgtgtgcg
      361 tgtgtgagtg tgtgagtgtg tgagtgtgtg agagagtgtg tgtgtgcgtg tgtgtgtgta
      421 tgtgtgtgtg tgtgcgtgtg cgtgtgtgag cgcgagcgag cgagtgaggg agaggagcga
      481 gagagtgcga gcgagaaaga ataaaaggaa agatttttct ctatgtatat aaagatggcc
      541 acgttagcaa acggacaggc tgacaacgcg agcctcagta ccaacgggct aggcagcagc
      601 ccgggcagcg ccgggcatat gaacggatta agccacagcc cggggaaccc gtcgaccatt
      661 cctatgaagg accacgatgc catcaagctg ttcattgggc agatcccccg aaacctggat
      721 gagaaggacc tcaagcccct cttcgaagag ttcggcaaga tctacgagct tacggttctg
      781 aaggacaggt tcacaggcat gcacaaaggc tgcgctttcc tcacctactg cgagcgtgag
      841 tcagcgctga aggcccagag cgcgctgcac gagcagaaga ccctgcccgg gatgaaccgg
      901 ccgatccagg tgaagcctgc ggacagcgag agccgaggag atagaaaact cttcgtgggt
      961 atgctcaaca agcaacaatc tgaggacgac gtgcgccgcc tcttcgaggc cttcgggaac
     1021 atcgaggagt gcactatcct gcgcgggccg gacggcaaca gcaaggggtg cgcctttgtg
     1081 aagtactcct cccatgccga ggcacaagcc gccatcaacg ctctacatgg cagccagacc
     1141 atgcctggag cctcctccag cctggtggtc aagtttgcag acactgacaa ggagcgcaca
     1201 atgcgacgga tgcagcagat ggctggccag atgggcatgt tcaaccccat ggccatcccc
     1261 ttcggagcct atggagccta cgctcaggca ctgatgcagc agcaagcagc cctcatggca
     1321 tcggtcgctc aaggaggcta cctgaatccc atggctgcct tcgctgccgc ccagatgcag
     1381 cagatggcgg ccctcaacat gaatggccta gcagccgcac ctatgacccc aacttcaggt
     1441 ggcagcaccc ctccaggcat cactgcacca gctgtgccta gcatcccgtc ccccattggg
     1501 gtgaacggct tcaccggcct ccccccacag gccaatgggc agcctgctgc ggaagctgtg
     1561 tttgccaatg gcattcaccc ttacccagca cagagcccca ccgcagcgga ccccctgcag
     1621 caggcctacg ccggagtgca gcagtatgca ggacctgctg cctaccctgc tgcctatggt
     1681 cagataagcc aggcctttcc tcagccaccg ccaatgattc cccagcaaca gagagaaggg
     1741 cccgagggct gtaacctgct catctaccat ctgccccagg agtttgggga cgctgagctg
     1801 atgcagatgt tcctcccttt cggccggcac cccgtgccct cccgctgcca ggccccctcc
     1861 tgtcagggag gacagtgtgc aataagctcc tccgcccgca ggcttcgtga gcttcgacaa
     1921 cccggccagc gcccagaccg ccatccaggc catgaacggc ttccagatag gcatgaagag
     1981 gctcaaggtg cagctgaagc ggcccaaaga cgccaatcgc ccgtactgag cgccggcggg
     2041 agcgtccccc gggggagacc aggactcgca cagggccagt caaatctacc acagtctcgc
     2101 gctgagctag gaataaagtt cacgtaatca catgagagtg gagaaaagtc ccccatccgg
     2161 caggatgctg aacgggctac attaaaaaca aacctctttc tctctctatt tataaatgag
     2221 aactgttgga cgacaccttt gacatatcag ccaataccaa tcaagctgaa gactccagac
     2281 actccgtgtg actgttaaca cttcttcaag gaaagtatag cgtctatgga gtgcagaggg
     2341 cacgtgtttg gggaaaaata tacatgacat aaagatgccg acgacgaaga agaaaaatga
     2401 tgtaaagcaa gcaagcaaac aaacaaacaa acaaaaaccc tcgactttaa aacgaaataa
     2461 cgtgagccca gttggggaag ctgaggggct gggcactagg aggagatgct gctgccaacc
     2521 gatcctgggg cttttccagc ccgtaggcgc ctgaggcagg caggggcaag tgtacaatgg
     2581 ggcctcgtcc ccagcaggcg gctgggaggc cgccactgag catctctatt tgtcattcct
     2641 ttagctattt agggaccaaa ggaccaaact ttttatcgca gatgtgtagc tctgtcaatt
     2701 agaggtggaa tggagaccaa cctccttcct gcctcctggc tgttcttgaa acagcttaga
     2761 gcgattctat gaaaatgtaa taaaaaaaat aaataaaaaa aataaaaaag aacaaaaaaa
     2821 aaacaggaaa aaaaataatg cttcaacgct tttaaaacag caagatacta gttctttgat
     2881 actttgagag gcgctttgat taccccgatt gaagtctctg aaactttcct atggttttct
     2941 gtattatatg tctggatgga gctgtttaga taaattgatt gatggatatt tggggaaagc
     3001 aacaaagata ttaagtcagt aaccataaag agaacaggag gggaaccagg ggacttcgaa
     3061 ggcaaggtaa ttgttgtgaa aagtctgtaa atgcttctaa ttcttccccc tcttaaaatc
     3121 ataatagttg tacagaattt taaaaggaaa agtttaaaat acctatatca tagaagaaaa
     3181 aaaattagag gaaagcaaaa aataaaaaaa aaggaaaaaa aaaccttata gaagttagcg
     3241 ttatgctaaa atcccagatg ttgtaggact gtacttctgt agagtttaga ctgagcatcg
     3301 atcccgtctc cctgcgagtg ctgtcggact cggtccccaa tggccaggcc ggactgtcca
     3361 gacatgcagg ctccggccgg aagcgccgct ccggaagcgt cctgccgcct ctcgcttcgc
     3421 cctcctcacc tctgcttcac tcgccttctg tgcttgttcc ggagactttc caggccaggg
     3481 agaactggga acttttcatc ttcaaacaac tagacaacac acacacacac aaaaacctta
     3541 aacaagagag agaaaacaaa caatctttga agaatttctg aaactgttta caaggaattt
     3601 tgaaaaacag ggatgtttaa atgatgccgg ctctgttttt ctgtaaataa atttgcatat
     3661 tttgtaggac ttttaattgt aatgatagag aaaaaacaag gaaaactatt taatgaaagc
     3721 acgatattta tctttggtaa atgactttag agcagttaaa gacattgctt aaaaaactca
     3781 gaatcagaaa aacactgaat tatttaagaa cacatatatt ttaaagtata acatatttat
     3841 tataatttat ttgcaccctt gggaagactt gctttgcatt ctgcctcaag agctcattga
     3901 tgtccatctg gaggccaggg gggtcttgga actaccattt tttttccttt agaacaacaa
     3961 aattctggtt gctctcaggc ctcctacctt ttctttcagt ctattttgtt gttgttttac
     4021 ttcttttttt tctttttctt tctcttgact cctcctttta ggatgtccag atgttgtaaa
     4081 aaaaaaaaaa aaaaaaaaca gctgcagttc aatacaactg ctcttttcac actgactccc
     4141 taaaactcct tgtaaccttc tgtaactatt ggatgacgct ttctccagct tagccctaaa
     4201 taaagcacag tttaaaaaaa aa
//
