LOCUS       XM_039102910            3270 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus CUGBP, Elav-like family member 3
            (Celf3), transcript variant X4, mRNA.
ACCESSION   XM_039102910
VERSION     XM_039102910.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3270
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3270
                     /gene="Celf3"
                     /gene_synonym="RGD1563168; Tnrc4"
                     /note="CUGBP, Elav-like family member 3; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 18 ESTs, 2 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     88 samples with support for all annotated introns"
                     /db_xref="GeneID:499669"
                     /db_xref="RGD:1563168"
     CDS             650..2227
                     /gene="Celf3"
                     /gene_synonym="RGD1563168; Tnrc4"
                     /codon_start=1
                     /product="CUGBP Elav-like family member 3 isoform X3"
                     /protein_id="XP_038958838.1"
                     /db_xref="GeneID:499669"
                     /db_xref="RGD:1563168"
                     /translation="MKEPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYT
                     GLHKGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPADSESRGDRKLFVGMLG
                     KQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTL
                     PEARGKTRPPREQTLTLPVTCGAHAQGASSSLVVKFADTEKERGLRRMQQVATQLGMF
                     SPIALQFGAYSAYTQALMQQQAALVAAHSAYLSPMATMAAVQMQHMAAINANGLIATP
                     ITPSSGTSTPPAIAATPVSAIPAALGVNGYSPVPTQPTGQPAPDALYPNGVHPYPDEA
                     LSAERSAGEAPIMPQTHSWLVMLSAAQSPAAPVDPLQQAYAGMQHYTAAYPAAYSLVA
                     PAFPQPPALVAQQPPPPPQQQQQQQQQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQE
                     FTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGM
                     KRLKVQLKRPKDANRPY"
ORIGIN      
        1 tgggggtggg aggggggggg tcaagggaga acttgaaggg ggcagggcag aagggacccc
       61 cggaaccctg ccgccatcag agatcaagca tttggcatca gggatcttcg gacccagcaa
      121 aaggatcagc cacaagggag gtgtcctccc taggaagcca acgagagagt cacctgcccc
      181 acatcaggag cagggacccc ctcatgacgc tgctggcaac tatagcaggc ccctagcccc
      241 tcagcctcct tcctatctcc ttcttctgac tcttattcca tctcctttgg catttgtgcc
      301 tttgctcccc gccctctgag ctccagctac cacccaaacg ccccagggct tggctgccct
      361 gaccctcatc ctggaatatt tgccagatct ctgggaggga gatcctttgc ttgggctatg
      421 ccccctgggg gtctgacagt gtctgcctag acccctgacc cctagccctc aactccccac
      481 gactcctttg tgtgaagagc cctcctctgc tcagcactgt ggttgggggc caaagggaaa
      541 gccggccctg ctgggcccct gggccctacc acctgcctcc tggttgggca gcttcccttg
      601 tctttgggcc tctccctgtt cccccggccc ctcctcctgg gccgccccaa tgaaggagcc
      661 ggatgccatc aagctgtttg tggggcagat cccgaggcat ctggaggaaa aggacctgaa
      721 gcccatcttc gagcagtttg gtcggatctt cgagctgact gtcatcaagg acaagtacac
      781 cgggctgcac aagggatgtg ctttcctgac gtactgtgct cgcgattcag ccctgaaggc
      841 ccagagtgcc ctgcacgaac agaagactct cccagggatg aacaggccga tccaggtcaa
      901 gccagccgac agcgagagtc gaggagaccg gaagctcttt gtggggatgc taggaaagca
      961 gcagacagat gaggatgtcc ggaagatgtt tgaaccgttt gggactatag acgagtgcac
     1021 tgtgctccgg gggccagacg ggaccagcaa aggctgtgcc tttgtgaagt tccagactca
     1081 tgctgaggcc caggcagcca ttaacactct tcacagcagc cggactctac cggaggcccg
     1141 aggcaagacg aggcccccca gggagcagac gctgactctt cctgtgacat gtggggccca
     1201 tgctcagggt gcctcatcca gcctggtggt aaagtttgct gacacagaga aggagcgagg
     1261 tctccgccgg atgcagcagg tggctaccca gctgggcatg ttcagcccta tcgccctcca
     1321 gtttggagcc tacagcgcct acacccaggc cctgatgcag cagcaggcgg ccctggtagc
     1381 agctcacagt gcctacctca gccctatggc caccatggct gccgtgcaga tgcagcacat
     1441 ggctgccatc aatgccaatg gcctcatcgc cacccccatc actccatcct caggaaccag
     1501 cacccctcct gccattgctg ccacgccggt ctctgccatt cctgctgcct tgggcgtcaa
     1561 cggctacagc ccagtgccca cccagcccac ggggcagcct gcccctgatg ctctctatcc
     1621 caacggggtt cacccttacc cagacgaggc tctgtctgct gagagaagtg ctggtgaggc
     1681 tcccattatg ccccagaccc actcatggct tgtgatgctc tctgcagccc agagccctgc
     1741 agcccctgtg gaccctctcc agcaggccta cgcaggaatg cagcactaca cagcagccta
     1801 ccctgcagcc tacagcctgg ttgcacctgc gttcccgcag cctccagccc tggtcgccca
     1861 gcagccccca ccaccacctc agcagcaaca gcagcagcag cagcaacagc agcagcagca
     1921 gcagcagcaa cagcagcagc agcagcagcg ggaaggccct gatggctgta acatcttcat
     1981 ctaccacctg ccccaggagt tcacagactc cgagatcctc cagatgtttg tcccttttgg
     2041 tcatgtcatc tcagccaaag tctttgttga ccgggccacc aatcagagca aatgttttgg
     2101 ctttgtgagt ttcgacaatc cggccagtgc ccaggctgcc atccaggcta tgaacggttt
     2161 ccagattggc atgaagcgcc tcaaagtcca gctaaagcgg cctaaggatg caaacagacc
     2221 ctactaaggg cttcaggtct ggagatacca gaggaagggg cacttcgtac cctcttccta
     2281 tgactggccc tggccttctc tgcacatctg ccctgggcct tgattggact tggggcaaaa
     2341 gctgcttcat ggcccaaagg gcctaggacc tggctcattc ccaccatctt gcctctctgg
     2401 agggccagtt ttgcctccct gcctccaaga gcctatttcc tccccggtgc ccttttggcc
     2461 ttttgtgagg aagtgaggaa taggcttgaa ggttcagggg catctgcctt ctgctaaggc
     2521 tcctgagatg agctctgtaa ccactgttca cacttgcctc ccctcagtgg gcctgaagta
     2581 gctgtggagg cccaggagga cagcagggca ttctctttcc caagcgccct cacctagcct
     2641 ctcctccacg gctcggcctt ctcagaagct ggctcccaca ttcccctcca ccctcaccta
     2701 gaggtaggat atctccaaat cccgggctcc cagccctaaa actcactgcc ttccccaagg
     2761 gccccctcca aggaggatgt gggggccctg agggctgcct ctctgccagt cagtcacaga
     2821 gacccttttt tcatgaggaa aagaccttcc cctgaatccc taaaaatgtt tacagtctct
     2881 gctggccctc catgtaaata ccatgagcac cagggcatta actagcccac ccagccagac
     2941 gctgccatct ctctttctga gagtttagac aatgttaccc ttggattctt tttttttttt
     3001 tttccctctc ttgatttttc tccctttgct ttgggggtaa ttgggtattt tgggggaagg
     3061 gtaccgggag ggctaaaggg gtttattacc tgatcatttt ctttaggaag aggttttaga
     3121 gagaagaaca tggggtggga gtgggaggtg aagggcgaga aggggaaatc aatctctgac
     3181 acttctctac acttaactta tttactgagt tttactttta aagagttggc cttttctgtc
     3241 taaataaaga aaaacatttg aaagcatcaa
//
