LOCUS       NM_001109190            3234 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus CUGBP, Elav-like family member 3 (Celf3), mRNA.
ACCESSION   NM_001109190 XM_001059024 XM_574988
VERSION     NM_001109190.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3234)
  AUTHORS   Ishizuka,A., Hasegawa,Y., Ishida,K., Yanaka,K. and Nakagawa,S.
  TITLE     Formation of nuclear bodies by the lncRNA Gomafu-associating
            proteins Celf3 and SF1
  JOURNAL   Genes Cells 19 (9), 704-721 (2014)
   PUBMED   25145264
REFERENCE   2  (bases 1 to 3234)
  AUTHORS   Chapple,J.P., Anthony,K., Martin,T.R., Dev,A., Cooper,T.A. and
            Gallo,J.M.
  TITLE     Expression, localization and tau exon 10 splicing activity of the
            brain RNA-binding protein TNRC4
  JOURNAL   Hum Mol Genet 16 (22), 2760-2769 (2007)
   PUBMED   17725984
REFERENCE   3  (bases 1 to 3234)
  AUTHORS   Dev,A., Nayernia,K., Meins,M., Adham,I., Lacone,F. and Engel,W.
  TITLE     Mice deficient for RNA-binding protein brunol1 show reduction of
            spermatogenesis but are fertile
  JOURNAL   Mol Reprod Dev 74 (11), 1456-1464 (2007)
   PUBMED   17393433
REFERENCE   4  (bases 1 to 3234)
  AUTHORS   Wang,J., Gao,Q.S., Wang,Y., Lafyatis,R., Stamm,S. and Andreadis,A.
  TITLE     Tau exon 10, whose missplicing causes frontotemporal dementia, is
            regulated by an intricate interplay of cis elements and trans
            factors
  JOURNAL   J Neurochem 88 (5), 1078-1090 (2004)
   PUBMED   15009664
REFERENCE   5  (bases 1 to 3234)
  AUTHORS   Ladd,A.N., Charlet,N. and Cooper,T.A.
  TITLE     The CELF family of RNA binding proteins is implicated in
            cell-specific and developmentally regulated alternative splicing
  JOURNAL   Mol Cell Biol 21 (4), 1285-1296 (2001)
   PUBMED   11158314
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000002.1.
            
            On Oct 2, 2008 this sequence version replaced NM_001109190.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360172.652941.1,
                                           SRR26360194.1876138.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-914               JAXUCZ010000002.1  184805091-184806004
            915-997             JAXUCZ010000002.1  184807110-184807192
            998-1046            JAXUCZ010000002.1  184811860-184811908
            1047-1175           JAXUCZ010000002.1  184812303-184812431
            1176-1255           JAXUCZ010000002.1  184812530-184812609
            1256-1399           JAXUCZ010000002.1  184813468-184813611
            1400-1541           JAXUCZ010000002.1  184813745-184813886
            1542-1691           JAXUCZ010000002.1  184814120-184814269
            1692-1757           JAXUCZ010000002.1  184814787-184814852
            1758-1919           JAXUCZ010000002.1  184815141-184815302
            1920-2063           JAXUCZ010000002.1  184815548-184815691
            2064-2200           JAXUCZ010000002.1  184816464-184816600
            2201-3234           JAXUCZ010000002.1  184818156-184819189
FEATURES             Location/Qualifiers
     source          1..3234
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q34"
     gene            1..3234
                     /gene="Celf3"
                     /gene_synonym="RGD1563168; Tnrc4"
                     /note="CUGBP, Elav-like family member 3"
                     /db_xref="GeneID:499669"
                     /db_xref="RGD:1563168"
     exon            1..914
                     /gene="Celf3"
                     /gene_synonym="RGD1563168; Tnrc4"
                     /inference="alignment:Splign:2.1.0"
     CDS             770..2191
                     /gene="Celf3"
                     /gene_synonym="RGD1563168; Tnrc4"
                     /note="CUG-BP- and ETR-3-like factor 3; trinucleotide
                     repeat containing 4"
                     /codon_start=1
                     /product="CUGBP Elav-like family member 3"
                     /protein_id="NP_001102660.1"
                     /db_xref="GeneID:499669"
                     /db_xref="RGD:1563168"
                     /translation="MKEPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYT
                     GLHKGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGML
                     GKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRT
                     LPGASSSLVVKFADTEKERGLRRMQQVATQLGMFSPIALQFGAYSAYTQALMQQQAAL
                     VAAHSAYLSPMATMAAVQMQHMAAINANGLIATPITPSSGTSTPPAIAATPVSAIPAA
                     LGVNGYSPVPTQPTGQPAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTAAYPA
                     AYSLVAPAFPQPPALVAQQPPPPPQQQQQQQQQQQQQQQQQQQQQQQREGPDGCNIFI
                     YHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMN
                     GFQIGMKRLKVQLKRPKDANRPY"
     exon            915..997
                     /gene="Celf3"
                     /gene_synonym="RGD1563168; Tnrc4"
                     /inference="alignment:Splign:2.1.0"
     exon            998..1046
                     /gene="Celf3"
                     /gene_synonym="RGD1563168; Tnrc4"
                     /inference="alignment:Splign:2.1.0"
     exon            1047..1175
                     /gene="Celf3"
                     /gene_synonym="RGD1563168; Tnrc4"
                     /inference="alignment:Splign:2.1.0"
     exon            1176..1255
                     /gene="Celf3"
                     /gene_synonym="RGD1563168; Tnrc4"
                     /inference="alignment:Splign:2.1.0"
     exon            1256..1399
                     /gene="Celf3"
                     /gene_synonym="RGD1563168; Tnrc4"
                     /inference="alignment:Splign:2.1.0"
     exon            1400..1541
                     /gene="Celf3"
                     /gene_synonym="RGD1563168; Tnrc4"
                     /inference="alignment:Splign:2.1.0"
     exon            1542..1691
                     /gene="Celf3"
                     /gene_synonym="RGD1563168; Tnrc4"
                     /inference="alignment:Splign:2.1.0"
     exon            1692..1757
                     /gene="Celf3"
                     /gene_synonym="RGD1563168; Tnrc4"
                     /inference="alignment:Splign:2.1.0"
     exon            1758..1919
                     /gene="Celf3"
                     /gene_synonym="RGD1563168; Tnrc4"
                     /inference="alignment:Splign:2.1.0"
     exon            1920..2063
                     /gene="Celf3"
                     /gene_synonym="RGD1563168; Tnrc4"
                     /inference="alignment:Splign:2.1.0"
     exon            2064..2200
                     /gene="Celf3"
                     /gene_synonym="RGD1563168; Tnrc4"
                     /inference="alignment:Splign:2.1.0"
     exon            2201..3234
                     /gene="Celf3"
                     /gene_synonym="RGD1563168; Tnrc4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtttttgttg aggagagcgc gtccggagag cagagctccg ggacccaggt gaccgggaaa
       61 gcaggcagcc ctagtgtcgg gagtagcccg cagcagccca agcgggggaa ccatacaggg
      121 tgggggtggg aggggggggg tcaagggaga acttgaaggg ggcagggcag aagggacccc
      181 cggaaccctg ccgccatcag agatcaagca tttggcatca gggatcttcg gacccagcaa
      241 aaggatcagc cacaagggag gtgtcctccc taggaagcca acgagagagt cacctgcccc
      301 acatcaggag cagggacccc ctcatgacgc tgctggcaac tatagcaggc ccctagcccc
      361 tcagcctcct tcctatctcc ttcttctgac tcttattcca tctcctttgg catttgtgcc
      421 tttgctcccc gccctctgag ctccagctac cacccaaacg ccccagggct tggctgccct
      481 gaccctcatc ctggaatatt tgccagatct ctgggaggga gatcctttgc ttgggctatg
      541 ccccctgggg gtctgacagt gtctgcctag acccctgacc cctagccctc aactccccac
      601 gactcctttg tgtgaagagc cctcctctgc tcagcactgt ggttgggggc caaagggaaa
      661 gccggccctg ctgggcccct gggccctacc acctgcctcc tggttgggca gcttcccttg
      721 tctttgggcc tctccctgtt cccccggccc ctcctcctgg gccgccccaa tgaaggagcc
      781 ggatgccatc aagctgtttg tggggcagat cccgaggcat ctggaggaaa aggacctgaa
      841 gcccatcttc gagcagtttg gtcggatctt cgagctgact gtcatcaagg acaagtacac
      901 cgggctgcac aagggatgtg ctttcctgac gtactgtgct cgcgattcag ccctgaaggc
      961 ccagagtgcc ctgcacgaac agaagactct cccagggatg aacaggccga tccaggtcaa
     1021 gccagccgac agcgagagtc gaggagaaga ccggaagctc tttgtgggga tgctaggaaa
     1081 gcagcagaca gatgaggatg tccggaagat gtttgaaccg tttgggacta tagacgagtg
     1141 cactgtgctc cgggggccag acgggaccag caaaggctgt gcctttgtga agttccagac
     1201 tcatgctgag gcccaggcag ccattaacac tcttcacagc agccggactc taccgggtgc
     1261 ctcatccagc ctggtggtaa agtttgctga cacagagaag gagcgaggtc tccgccggat
     1321 gcagcaggtg gctacccagc tgggcatgtt cagccctatc gccctccagt ttggagccta
     1381 cagcgcctac acccaggccc tgatgcagca gcaggcggcc ctggtagcag ctcacagtgc
     1441 ctacctcagc cctatggcca ccatggctgc cgtgcagatg cagcacatgg ctgccatcaa
     1501 tgccaatggc ctcatcgcca cccccatcac tccatcctca ggaaccagca cccctcctgc
     1561 cattgctgcc acgccggtct ctgccattcc tgctgccttg ggcgtcaacg gctacagccc
     1621 agtgcccacc cagcccacgg ggcagcctgc ccctgatgct ctctatccca acggggttca
     1681 cccttaccca gcccagagcc ctgcagcccc tgtggaccct ctccagcagg cctacgcagg
     1741 aatgcagcac tacacagcag cctaccctgc agcctacagc ctggttgcac ctgcgttccc
     1801 gcagcctcca gccctggtcg cccagcagcc cccaccacca cctcagcagc aacagcagca
     1861 gcagcagcaa cagcagcagc agcagcagca gcaacagcag cagcagcagc agcgggaagg
     1921 ccctgatggc tgtaacatct tcatctacca cctgccccag gagttcacag actccgagat
     1981 cctccagatg tttgtccctt ttggtcatgt catctcagcc aaagtctttg ttgaccgggc
     2041 caccaatcag agcaaatgtt ttggctttgt gagtttcgac aatccggcca gtgcccaggc
     2101 tgccatccag gctatgaacg gtttccagat tggcatgaag cgcctcaaag tccagctaaa
     2161 gcggcctaag gatgcaaaca gaccctacta agggcttcag gtctggagat accagaggaa
     2221 ggggcacttc gtaccctctt cctatgactg gccctggcct tctctgcaca tctgccctgg
     2281 gccttgattg gacttggggc aaaagctgct tcatggccca aagggcctag gacctggctc
     2341 attcccacca tcttgcctct ctggagggcc agttttgcct ccctgcctcc aagagcctat
     2401 ttcctccccg gtgccctttt ggccttttgt gaggaagtga ggaataggct tgaaggttca
     2461 ggggcatctg ccttctgcta aggctcctga gatgagctct gtaaccactg ttcacacttg
     2521 cctcccctca gtgggcctga agtagctgtg gaggcccagg aggacagcag ggcattctct
     2581 ttcccaagcg ccctcaccta gcctctcctc cacggctcgg ccttctcaga agctggctcc
     2641 cacattcccc tccaccctca cctagaggta ggatatctcc aaatcccggg ctcccagccc
     2701 taaaactcac tgccttcccc aagggccccc tccaaggagg atgtgggggc cctgagggct
     2761 gcctctctgc cagtcagtca cagagaccct tttttcatga ggaaaagacc ttcccctgaa
     2821 tccctaaaaa tgtttacagt ctctgctggc cctccatgta aataccatga gcaccagggc
     2881 attaactagc ccacccagcc agacgctgcc atctctcttt ctgagagttt agacaatgtt
     2941 acccttggat tctttttttt tttttttccc tctcttgatt tttctccctt tgctttgggg
     3001 gtaattgggt attttggggg aagggtaccg ggagggctaa aggggtttat tacctgatca
     3061 ttttctttag gaagaggttt tagagagaag aacatggggt gggagtggga ggtgaagggc
     3121 gagaagggga aatcaatctc tgacacttct ctacacttaa cttatttact gagttttact
     3181 tttaaagagt tggccttttc tgtctaaata aagaaaaaca tttgaaagca tcaa
//
