LOCUS       XM_039095587            5424 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus CUGBP, Elav-like family member 2
            (Celf2), transcript variant X10, mRNA.
ACCESSION   XM_039095587
VERSION     XM_039095587.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051352.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5424
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5424
                     /gene="Celf2"
                     /gene_synonym="Brunol3; Cugbp2; Etr3; Napor"
                     /note="CUGBP, Elav-like family member 2; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 10 mRNAs, 148 ESTs, 2 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 15 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:29428"
                     /db_xref="RGD:68347"
     CDS             83..1423
                     /gene="Celf2"
                     /gene_synonym="Brunol3; Cugbp2; Etr3; Napor"
                     /codon_start=1
                     /product="CUGBP Elav-like family member 2 isoform X6"
                     /protein_id="XP_038951515.1"
                     /db_xref="GeneID:29428"
                     /db_xref="RGD:68347"
                     /translation="MNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQ
                     INVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKS
                     NAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAM
                     AQNAIKAMHQSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTG
                     LGGLTPQYLALLQQATSSSNLGAFSGIQQMAGMNALQLQNLATLAAAAAAAQTSATST
                     NANPLSSTSSALGALTSPVAASTPNSTAGAAMNSLTSLGTLQGLAGATVGLNNINALA
                     GTISIAQMLSGMAALNGGLGATGLTNGTAGTMDALTQAYSGIQQYAAAALPTLYSQSL
                     LQQQSAAGSQKEGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY"
ORIGIN      
        1 acttttggat cttgtttctt ctcaaccaca ttctttattt ggatcgaatc actatttacc
       61 aagtaacggc acagccaaca agatgaacgg agctttggat cattccgacc agccagaccc
      121 agatgccatt aagatgtttg tcggacagat ccctaggtcc tggtcagaaa aggagctgaa
      181 agaacttttt gagccttatg gagctgtcta ccagatcaac gtcctccggg accggagtca
      241 gaaccctccc cagagcaaag gttgttgttt cgtaacattt tatacaagaa aagctgcact
      301 tgaggcccag aatgcactgc acaatattaa aactttacct gggatgcatc atcccattca
      361 gatgaaacct gcagatagtg aaaagtcaaa cgctgtggaa gaccgaaaat tgttcatagg
      421 aatggtttcc aagaagtgta acgagaatga catcagagtg atgttttctc ccttcggtca
      481 gatagaagaa tgccggattc tccggggacc tgacgggctg agtcgaggct gtgcgtttgt
      541 cacattttct accagggcaa tggcacagaa tgcaatcaaa gccatgcatc agtctcagac
      601 catggagggc tgctcttcac ctatcgtggt gaagttcgct gacactcaga aggacaagga
      661 gcaaaggcgc ctccagcagc agcttgcaca gcagatgcaa cagctcaaca ctgccacttg
      721 ggggaacctg acaggactgg gtggacttac cccacagtac ctggcgcttc tgcagcaggc
      781 cacctcctcc agcaacctgg gtgcattcag tggcattcag caaatggctg gcatgaatgc
      841 tttacagtta cagaatctgg caacgctggc tgcagctgca gctgccgccc aaacctcagc
      901 caccagcacc aatgcaaacc ctctctccag cacaagcagt gccctggggg ccctcacaag
      961 tcccgtggct gcttcaaccc ccaattctac tgctggtgca gccatgaact ccttgacctc
     1021 tcttgggact ctgcaaggat tggctggagc cactgtcgga ttgaataata ttaatgcact
     1081 agcaggtacc ataagcattg ctcaaatgct ctcaggtatg gcggctctga atggaggact
     1141 tggcgccaca ggcttgacga atggtacggc tggcaccatg gacgccctca cgcaggccta
     1201 ctcaggaatt cagcagtacg cggcagctgc actgcccact ttgtacagcc agagcctgct
     1261 gcagcagcag agcgctgcag gcagccagaa ggaaggtttt gttagctatg acaatccagt
     1321 ctctgcacaa gctgcaatcc aggctatgaa cggctttcag atcggcatga aacgcttgaa
     1381 ggtgcagctg aagcgctcca aaaacgacag caaaccttac tgatcctaac cccagaagct
     1441 ccctgctctt attttagctt tcttagggta agtcccacaa gccagcctgt tctcaacagg
     1501 gaaggcagag gagggaccac aatgccaact tttaccaaga gagacggtta tttttacatt
     1561 aaggcctccg tttcttccac taatgcccca cccagtctgc cataatcaaa acctgggcta
     1621 ccttgttctt attgagtaaa ccccacctcc aattgtgcca ctgtattctc cttggttttg
     1681 caatttgaat atccttactc ttttaagaaa aatttgtttt gcttttttaa agagaaacat
     1741 ataaacaagt aaatgacatc ttgagaattt gaaaggcaag caaacactaa cgtgcaattc
     1801 taactctgaa accacgggtg ccccgagagc actgcctgga gaactcaccc tccctgcccg
     1861 cccgcccacc gcccgcccct cggagggccc cacgattaga gatggcgtgg tggcccagca
     1921 gagggagaag ccaggagaag cacttaaaac tccacaaaac accctcccac tacattggtt
     1981 tcttttaata taagtaggat tttattttag ggttcaaaga aacatgacat ttattggtca
     2041 gatgattaca ctggttgtct attttgttat tgttttattt ttgtttttag aaaggattaa
     2101 tgtaaaaaaa gatttagaga tctgtttctt aaagctacag ggtttaaaaa taaaataaaa
     2161 tgagtgaaaa tacttgatgt ttcttgaaag ataaatttaa taataaataa atacataaat
     2221 aatacataaa taaaaagaaa gccacaggcc tgtaaatttt atttgtaaaa aaagcatttc
     2281 tatttttata caaaattttt actgcctcag aaataatgga agttatttat tgcctattgt
     2341 taacttattg ggtatctaaa gagcagttct ctgtctagct agaaccttct gaagtagtct
     2401 ctagaggaat tgttctagga atgggctttt tttcaccgtt gaaccctaga cctaaagttc
     2461 atgctttatc ctcttgtcct ttgtatttgt ctgattattt tgtttgtaaa ttccattatc
     2521 tagtttacaa ttcagttgtc ttgacttccc catatgtcac ctttgttcaa actggaccct
     2581 ctcctctgtc cctgctagtc cttcacccca aagcacccag aatccatccc ctctcactct
     2641 ctccagatgg attctcttgg ggtttcattg tactgtggaa aaagagtgta agaaatgcaa
     2701 attatgtgaa tggctcatag actccctgaa gacctaagat ttgcattagt ttttctccgc
     2761 accgcaccct ggaaagtgat gttgttgctg ctgcgcagac tctgtgtaac ttctgactct
     2821 tccttgtttt ctccccagac atcttcatgc ccgttagtca tcgtttgcct agcatgtccc
     2881 tgtggcgtct caaaaacagt ttcatcgtcc cgtcattgtt tctgatgtct ttctgacctc
     2941 acgtcatatt tggttctctc ctactgacct ttgatctagt tttgaccttt gaaatttgca
     3001 tgtgacctca tctcgctatg aattctggga agtcaatgtg aaaaacattg ctgcattcat
     3061 gcaagactga aattattaga caaattatag aaaacaaaac ctgtggctaa aatgtttctt
     3121 tcttattttt tttttctttt cataaaacag acttgaaagt attacacagg gattggcatt
     3181 ctgcccggtc actggtgaca atagcaatat gtgtccaggg acacagaatg ttggtttcta
     3241 acagactact tccaaaaaca gtttgagaaa aaaaaactgt ctgattttaa gtctctagag
     3301 gtctgtaata gtttttacat ttttcaggca gtgtaaagtt tttgataagg ccattttacg
     3361 tggctcactt tctcattaag atatatatag agaaccactt tttgtagatt agtataagaa
     3421 aatatttacc ctgttttggg gcaaatgcta cctatttgtg tcaccttttg ctgaactgac
     3481 tcacagttag acaatccatg gtttaatgca catgaaatta cctatatttt atactgttcc
     3541 aatgtacagg agaaagctac tgtaaactgc gtcatgtcgg tgcttctgtg gattaagttg
     3601 tggtctcatc atgagtctta aggtcttaat gttatttgtt gataagacaa gcttagaatt
     3661 ggtttactta taacaaaaag aatttcaaaa aaaaaaaagt tgtttgctta aaaaaaaaat
     3721 ttaatgtgag aaaaaaaaaa aaacaaacta ttccagaata agtttgtgtt ggcttgagaa
     3781 agcattgatg tcaccttttt tattgtggac tattagatgt gtttgtgttc agcaaaatgt
     3841 gatctgtttt tgttttttct tttaaagaaa aaaaagtgaa aactatctag tgccaaattc
     3901 caaaggtact tccttcctag agctccgcgt gtttcctgtg agaagtaatt tgataacatg
     3961 gtattttatt atgtgttttg tataaatccc taatatttaa aacaaaaaaa aaaaaaggtt
     4021 acaaagtttg ttaacttgct actccgtggt cttgttgcct gaaattgtta ttgttcgtta
     4081 tttctctatg ctgttttgta agacattgta taagtgcccg tgtgttactt ttctaatcac
     4141 cctccacatc gatgctatga cagcaaccct cacaatgtat tctcttcaca atgtctgcaa
     4201 acctccaagg tgagaaagtc ctgaactttt aaccctttct acccagagct atctggaatg
     4261 ttggtaactt tttatactgt catccttggg tttcttttgg ggtgtttaga ttttttttct
     4321 ccatttgtat cttctgagtt ttttgttttt tgagacaccc acccacccaa aaactcttaa
     4381 gtctttttcc taaaccatgt tttatttttc ttttttatcc cccctcttcc ttattattat
     4441 cctatgctcc tttagtttaa atgtaagaga ttgagcaaat cctatgaagg taaacgtagg
     4501 tagattttta gcccctacac aaaccctaaa gacaatgtct gcttttcgag atggggtttc
     4561 atggtatgtc ctagtgtaca atatttttat acaccctgga gttaatggct ttttttggtg
     4621 gtctactctt tcaagaaacg ttgcttttgt ttcttaaaca cccctatgta atgctgagtc
     4681 agtcattccg cccgggattc tcagactcct gtggacacct gaatgagaaa ggtgtcttca
     4741 cgcaaatccc tcaggccttt ccctgcctct ctgggtccct agggggtttt gatctttagg
     4801 tgaacacatt tcaagtggct ggccatgtaa gaggagatca gagctgctct tcaccacagt
     4861 tactaaccaa ataccaggac tagatcctgc tgtcattttt gaaagtgcca tattcctctg
     4921 agtctggctt cttatgagca gatgtcttgt tctcacagac cccaatgtcc tacctacagt
     4981 cccagcactc gcccagtctc tgggaaaaca aaccctgcaa gctcctggtc tcagctcccc
     5041 ttccttctca ccctgcctcc atttggttta atgtgtgtgt gattgtgata gccctgagat
     5101 ggaaaggatt agcctctcac aatgcaaaaa aaaaaaaaat tccctcctta cagcacgagc
     5161 acttcctgca atgccgcggt ctgtgtcccc cacacctgtt taccactgcc ggggccttct
     5221 tcgtcctcga gggctatttt gtacttccgc agcactcagc gcagtaacag tgaccacaca
     5281 tttctcagtc tctctgtggt ggtgtaggca cacatgtaga cacacaagac aactccagtc
     5341 gtatttcata gaccgtctcg ttcagaatct attcatttac caacggcata aatgacaaca
     5401 acaaagaaaa ttcttgaatt tttc
//
