LOCUS       NM_001170324            1774 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus CEA cell adhesion molecule 20 (Ceacam20), mRNA.
ACCESSION   NM_001170324 XM_001076225 XM_218430
VERSION     NM_001170324.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1774)
  AUTHORS   Murata,Y., Kotani,T., Supriatna,Y., Kitamura,Y., Imada,S.,
            Kawahara,K., Nishio,M., Daniwijaya,E.W., Sadakata,H., Kusakari,S.,
            Mori,M., Kanazawa,Y., Saito,Y., Okawa,K., Takeda-Morishita,M.,
            Okazawa,H., Ohnishi,H., Azuma,T., Suzuki,A. and Matozaki,T.
  TITLE     Protein tyrosine phosphatase SAP-1 protects against colitis through
            regulation of CEACAM20 in the intestinal epithelium
  JOURNAL   Proc Natl Acad Sci U S A 112 (31), E4264-E4271 (2015)
   PUBMED   26195794
REFERENCE   2  (bases 1 to 1774)
  AUTHORS   Kitamura,Y., Murata,Y., Park,J.H., Kotani,T., Imada,S., Saito,Y.,
            Okazawa,H., Azuma,T. and Matozaki,T.
  TITLE     Regulation by gut commensal bacteria of carcinoembryonic
            antigen-related cell adhesion molecule expression in the intestinal
            epithelium
  JOURNAL   Genes Cells 20 (7), 578-589 (2015)
   PUBMED   25908210
REFERENCE   3  (bases 1 to 1774)
  AUTHORS   Zebhauser,R., Kammerer,R., Eisenried,A., McLellan,A., Moore,T. and
            Zimmermann,W.
  TITLE     Identification of a novel group of evolutionarily conserved members
            within the rapidly diverging murine Cea family
  JOURNAL   Genomics 86 (5), 566-580 (2005)
   PUBMED   16139472
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On or before Dec 19, 2009 this sequence version replaced
            XM_001076225.1, XM_218430.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643288.1426.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760400, SAMEA5760476
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-86                JAXUCZ010000001.1  88750010-88750095
            87-173              JAXUCZ010000001.1  88752521-88752607
            174-452             JAXUCZ010000001.1  88754816-88755094
            453-737             JAXUCZ010000001.1  88755683-88755967
            738-1016            JAXUCZ010000001.1  88757973-88758251
            1017-1295           JAXUCZ010000001.1  88760070-88760348
            1296-1413           JAXUCZ010000001.1  88765128-88765245
            1414-1505           JAXUCZ010000001.1  88765462-88765553
            1506-1567           JAXUCZ010000001.1  88766511-88766572
            1568-1609           JAXUCZ010000001.1  88766998-88767039
            1610-1720           JAXUCZ010000001.1  88768831-88768941
            1721-1774           JAXUCZ010000001.1  88771626-88771679
FEATURES             Location/Qualifiers
     source          1..1774
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q21"
     gene            1..1774
                     /gene="Ceacam20"
                     /gene_synonym="RGD1311281"
                     /note="CEA cell adhesion molecule 20"
                     /db_xref="GeneID:292701"
                     /db_xref="RGD:1311281"
     exon            1..86
                     /gene="Ceacam20"
                     /gene_synonym="RGD1311281"
                     /inference="alignment:Splign:2.1.0"
     CDS             35..1774
                     /gene="Ceacam20"
                     /gene_synonym="RGD1311281"
                     /note="CEA-related cell adhesion molecule 20;
                     carcinoembryonic antigen; carcinoembryonic antigen-related
                     cell adhesion molecule 20"
                     /codon_start=1
                     /product="carcinoembryonic antigen-related cell adhesion
                     molecule 20 precursor"
                     /protein_id="NP_001163795.1"
                     /db_xref="GeneID:292701"
                     /db_xref="RGD:1311281"
                     /translation="MGPAGFHDCPWTAILLSASLLTTWNPLAAAQFTDHAELLSNTQM
                     ERASLAKPILTVRQRVVTEQRDMADFYCATNAVNATIHWVFNNSLLVLNERMKLSADN
                     KNLTVLVVQREDSGSYLCEVQSGFEVGRSDDTLLEVNYGPDPVSIKLDSGVATGDVVE
                     VMEGNTVNFWVETQSYPAPTYTWYLPTDSIQPPPITGQLTIPAISREQEGMYRCLVSN
                     TVTNSSRLGVVKVQVLEKVTAPYIESPTLALVENATSVMLTCKTSHQRVGVHWYLRGQ
                     PLMPSEHLTLSSQNRTLTIHGLQRDDSGPYECEVWNWGSQARSVPLELTINYGPDQVD
                     ITQGSASGVVNTIEATLNSSLTLHCWADSKPGARYHWTHEHSSQVFAGDQLNIEALRQ
                     EHQGIYSCTSSNNVTGLTRSASVLVTVVGLQSSSMSPGVIAGIVIGILAAIALVIGLG
                     YFLYSTKDRWIHRRSANDTTTSNTEPPTSVTQSTPESTRPNKPKPVYDNMLKPKGEDR
                     GKKMPSPPPVSPEHFYEKKPPSAAPEGPRKPLPRIPKQPLVPPVPNRNKESNYEALLN
                     PNQSLYCKINPSV"
     exon            87..173
                     /gene="Ceacam20"
                     /gene_synonym="RGD1311281"
                     /inference="alignment:Splign:2.1.0"
     exon            174..452
                     /gene="Ceacam20"
                     /gene_synonym="RGD1311281"
                     /inference="alignment:Splign:2.1.0"
     exon            453..737
                     /gene="Ceacam20"
                     /gene_synonym="RGD1311281"
                     /inference="alignment:Splign:2.1.0"
     exon            738..1016
                     /gene="Ceacam20"
                     /gene_synonym="RGD1311281"
                     /inference="alignment:Splign:2.1.0"
     exon            1017..1295
                     /gene="Ceacam20"
                     /gene_synonym="RGD1311281"
                     /inference="alignment:Splign:2.1.0"
     exon            1296..1413
                     /gene="Ceacam20"
                     /gene_synonym="RGD1311281"
                     /inference="alignment:Splign:2.1.0"
     exon            1414..1505
                     /gene="Ceacam20"
                     /gene_synonym="RGD1311281"
                     /inference="alignment:Splign:2.1.0"
     exon            1506..1567
                     /gene="Ceacam20"
                     /gene_synonym="RGD1311281"
                     /inference="alignment:Splign:2.1.0"
     exon            1568..1609
                     /gene="Ceacam20"
                     /gene_synonym="RGD1311281"
                     /inference="alignment:Splign:2.1.0"
     exon            1610..1720
                     /gene="Ceacam20"
                     /gene_synonym="RGD1311281"
                     /inference="alignment:Splign:2.1.0"
     exon            1721..1774
                     /gene="Ceacam20"
                     /gene_synonym="RGD1311281"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctgcccagta cactgaggcc aggtgccagg actcatgggg cctgctggct tccacgactg
       61 cccgtggaca gcgatcctcc tctcagcctc ccttctgacc acatggaacc ccctagctgc
      121 tgcccagttc accgaccatg ctgagctgct tagcaacacc cagatggaga gagcttcact
      181 ggccaagccc atcctcacag tccgtcagcg tgttgtcaca gagcagaggg acatggcaga
      241 cttctactgt gccactaatg ctgttaacgc caccatccac tgggtcttca acaactctct
      301 gctcgtgttg aacgagcgca tgaagctgtc tgcagataac aagaacctca ccgtcctcgt
      361 cgttcagcgg gaggactcgg gctcttacct gtgtgaagtg cagtccggct ttgaggttgg
      421 cagaagtgac gacaccttgc tggaggtgaa ctatggtcct gaccctgtgt caatcaagct
      481 ggactcagga gtagccactg gggacgtggt tgaggtgatg gaaggcaaca ccgtgaactt
      541 ctgggtggaa acacagtctt accctgctcc cacctacacc tggtatctcc ccactgactc
      601 catccagccc ccccccatca caggacaact cacgatcccc gccatatcca gggaacagga
      661 gggcatgtac aggtgcctgg tgtccaacac tgtcaccaac tcatctcgtc taggtgttgt
      721 caaagtccaa gtgctcgaaa aagtgactgc accgtatatc gagtccccaa ccttggccct
      781 tgtggagaac gccacctctg tgatgctgac ctgcaaaacc agccaccaga gggttggtgt
      841 ccattggtat ctgaggggtc agccgctcat gcctagtgag cacctgacat tgtcatccca
      901 aaacagaacc ctgaccatcc atggccttca gagagacgat tctgggccct atgagtgtga
      961 ggtgtggaac tggggtagcc aggcacgcag tgtccccctg gagctcacca tcaactatgg
     1021 ccctgaccaa gtggacatca cccaggggtc agcgtctgga gtggtcaaca ccatcgaggc
     1081 aacgctcaac tccagcctga ccctgcattg ctgggctgac tccaaaccag gtgccaggta
     1141 tcactggacc catgagcact cctcccaggt gtttgctggc gatcaactga acatcgaggc
     1201 actgaggcag gagcatcagg gcatttacag ctgcacaagc tccaacaatg tcaccggcct
     1261 gacccgatcc gcctctgtcc tggtcacggt ggtgggtctc cagtcatcct ctatgtctcc
     1321 tggagtcatt gctggcattg ttatcgggat cctggctgcc attgctttgg tgatagggct
     1381 gggctacttc ctctacagca ccaaggacag atggatccac aggagatcag ctaatgacac
     1441 aacgacctct aataccgagc cacccacctc tgtgactcag agcaccccag agtccaccag
     1501 acccaacaaa ccaaagcctg tatatgacaa tatgctgaaa cccaaaggag aggacagagg
     1561 taaaaagatg ccatctccgc cacctgtctc cccagagcac ttctatgaga agaagccacc
     1621 ttccgcagct cctgagggcc ccaggaagcc attgccccgt atcccgaagc agccattggt
     1681 ccccccagta ccaaacagaa acaaagagtc aaattatgag gcactgctga atccgaacca
     1741 aagtctttac tgcaagatca acccgtcagt ctga
//
