LOCUS       NM_001169579            1615 bp    mRNA    linear   ROD 08-DEC-2024
DEFINITION  Rattus norvegicus CEA cell adhesion molecule 16, tectorial membrane
            component (Ceacam16), mRNA.
ACCESSION   NM_001169579 XM_001076153 XM_214856
VERSION     NM_001169579.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1615)
  AUTHORS   Wang,H., Wang,X., He,C., Li,H., Qing,J., Grati,M., Hu,Z., Li,J.,
            Hu,Y., Xia,K., Mei,L., Wang,X., Yu,J., Chen,H., Jiang,L., Liu,Y.,
            Men,M., Zhang,H., Guan,L., Xiao,J., Zhang,J., Liu,X. and Feng,Y.
  TITLE     Exome sequencing identifies a novel CEACAM16 mutation associated
            with autosomal dominant nonsyndromic hearing loss DFNA4B in a
            Chinese family
  JOURNAL   J Hum Genet 60 (3), 119-126 (2015)
   PUBMED   25589040
REFERENCE   2  (bases 1 to 1615)
  AUTHORS   Cheatham,M.A., Goodyear,R.J., Homma,K., Legan,P.K., Korchagina,J.,
            Naskar,S., Siegel,J.H., Dallos,P., Zheng,J. and Richardson,G.P.
  TITLE     Loss of the tectorial membrane protein CEACAM16 enhances
            spontaneous, stimulus-frequency, and transiently evoked otoacoustic
            emissions
  JOURNAL   J Neurosci 34 (31), 10325-10338 (2014)
   PUBMED   25080593
REFERENCE   3  (bases 1 to 1615)
  AUTHORS   Zheng,J., Miller,K.K., Yang,T., Hildebrand,M.S., Shearer,A.E.,
            DeLuca,A.P., Scheetz,T.E., Drummond,J., Scherer,S.E., Legan,P.K.,
            Goodyear,R.J., Richardson,G.P., Cheatham,M.A., Smith,R.J. and
            Dallos,P.
  TITLE     Carcinoembryonic antigen-related cell adhesion molecule 16
            interacts with alpha-tectorin and is mutated in autosomal dominant
            hearing loss (DFNA4)
  JOURNAL   Proc Natl Acad Sci U S A 108 (10), 4218-4223 (2011)
   PUBMED   21368133
REFERENCE   4  (bases 1 to 1615)
  AUTHORS   Zebhauser,R., Kammerer,R., Eisenried,A., McLellan,A., Moore,T. and
            Zimmermann,W.
  TITLE     Identification of a novel group of evolutionarily conserved members
            within the rapidly diverging murine Cea family
  JOURNAL   Genomics 86 (5), 566-580 (2005)
   PUBMED   16139472
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On or before Dec 19, 2009 this sequence version replaced
            XM_001076153.1, XM_214856.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360181.2695048.1,
                                           SRR26360181.3212629.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-170               JAXUCZ010000001.1  88652652-88652821   c
            171-515             JAXUCZ010000001.1  88649745-88650089   c
            516-791             JAXUCZ010000001.1  88648995-88649270   c
            792-1070            JAXUCZ010000001.1  88647255-88647533   c
            1071-1397           JAXUCZ010000001.1  88644560-88644886   c
            1398-1615           JAXUCZ010000001.1  88642925-88643142   c
FEATURES             Location/Qualifiers
     source          1..1615
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q21"
     gene            1..1615
                     /gene="Ceacam16"
                     /note="CEA cell adhesion molecule 16, tectorial membrane
                     component"
                     /db_xref="GeneID:292700"
                     /db_xref="RGD:1306386"
     exon            1..170
                     /gene="Ceacam16"
                     /inference="alignment:Splign:2.1.0"
     CDS             128..1408
                     /gene="Ceacam16"
                     /note="B-cell leukemia/lymphoma 3; CEA-related cell
                     adhesion molecule 16; carcinoembryonic antigen-related
                     cell adhesion molecule 16; cell adhesion molecule
                     CEACAM16"
                     /codon_start=1
                     /product="cell adhesion molecule CEACAM16 precursor"
                     /protein_id="NP_001163050.1"
                     /db_xref="GeneID:292700"
                     /db_xref="RGD:1306386"
                     /translation="MKMPLTWGSWFLLSAWILNAGAEISITPEPAQPAEGDNVTLVVH
                     GLSGELLAYNWYAGPSISLTFLVASYIVSTGDETPGPAHTGREAVRPDGSLDIHGALP
                     GHTGTYILQTLNRQFQTEVGYGHMQVYEILAPPTVMANDTALVERRDTLRLICSSPSP
                     AEVRWFFNGDALPVAVRLGLSPDGRMLTRHGVRREEAGAYQCEVWNPVSVSRSEPLNL
                     TVYFGPERVAILQDSTTRTGCTIKVDFNTSLTLWCVSRSCPEPEYVWAFNGKALKNGQ
                     DHLNISSMSADHEGTYTCIAKNSKTLLSGSASVVVKLSAAAVAMMIVPVPTKPMEGQD
                     VTLTVQGYPKDLLVYAWYRGPASEPNRLLSQLPSGNWIAGPAHTGREVGFANCSLLVQ
                     KLNLTDAGRYTLKTVTLQGKTDTLEVELQVAPLE"
     exon            171..515
                     /gene="Ceacam16"
                     /inference="alignment:Splign:2.1.0"
     exon            516..791
                     /gene="Ceacam16"
                     /inference="alignment:Splign:2.1.0"
     exon            792..1070
                     /gene="Ceacam16"
                     /inference="alignment:Splign:2.1.0"
     exon            1071..1397
                     /gene="Ceacam16"
                     /inference="alignment:Splign:2.1.0"
     exon            1398..1615
                     /gene="Ceacam16"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tccgccccgg ttccaaattg ccgaccgatc ccgggtccag tggcagactg agccaagcct
       61 caaccaggaa gggcctctga gagaccggga cgccatcacc accaaccatc tcggacctca
      121 gcctgggatg aaaatgccat tgacctgggg cagctggttc ctcctcagtg cctggatcct
      181 gaacgccggg gctgagatct ccatcacccc cgagcctgct caacctgcag agggggacaa
      241 tgtcacgttg gtagtccatg ggctttctgg ggaactgctt gcctacaatt ggtatgcagg
      301 gccttcgatc agccttacct tcctggtggc cagttacatt gtcagcactg gtgatgagac
      361 ccctggacca gcccacacag ggcgggaagc tgtgcgtccc gatggcagcc ttgatatcca
      421 tggtgcccta cctgggcaca caggcaccta catcctgcaa actctgaaca ggcagtttca
      481 gacggaggtg ggctacggac acatgcaggt ctatgagatc ctggcccctc ccacggtcat
      541 ggccaacgac actgcgctgg tggagcgtag ggataccctt cgtctcatct gtagcagccc
      601 cagccccgct gaggtccgct ggttcttcaa tggtgacgct ctgcccgtcg ctgtccgctt
      661 gggcctgtcc cctgatggca ggatgctgac ccggcatggc gtccgcaggg aggaggcagg
      721 cgcctaccag tgtgaggtgt ggaacccggt cagcgtcagc cgcagcgagc cgctgaacct
      781 gacggtatac ttcggccctg aacgagtggc tatcctccaa gattctacca cccgcacagg
      841 ctgcactatt aaagtggact tcaacacgtc cctcaccctg tggtgtgtgt cccggtcctg
      901 ccctgagcca gagtatgtgt gggccttcaa tgggaaggcc ttgaagaatg gtcaggatca
      961 cctgaacatc agctccatga gtgcagacca cgagggcacg tacacgtgca ttgctaagaa
     1021 ctccaagacg ctgctgtctg gctctgcctc agtggtggtt aagctgtctg ccgcagctgt
     1081 agccatgatg attgtccctg taccaactaa gccaatggaa ggtcaggacg tgaccctgac
     1141 tgtccagggc taccccaagg acctgctagt ctacgcctgg taccgtggac ctgcctcaga
     1201 acccaaccga ctgctaagcc agctgccatc agggaactgg atcgccggcc cagcgcacac
     1261 aggccgggag gtgggctttg ccaattgctc actgctggtg caaaagctga acctcacgga
     1321 tgccggacgc tacacactca agaccgtcac actgcagggc aagaccgaca ctctggaggt
     1381 ggagctacag gtggcccccc tggagtagcc accgccacct cttcagtagc agcgcaggcc
     1441 gctgagacct ggagagaatc gtgcccttgc agcatctccc tgcatccgcc cctgagccca
     1501 ggaccgctca cctgcagcac ggatgcgggc cgtggtcccg ccatgctgcc tccatctaga
     1561 cttagcgccg aactgtggga gagctgccca gtccataaac gtcccaatga atgca
//
