LOCUS       NM_001106189            7971 bp    mRNA    linear   ROD 22-MAR-2023
DEFINITION  Rattus norvegicus chromodomain Y-like 2 (Cdyl2), mRNA.
ACCESSION   NM_001106189 XM_001078221 XM_039097638 XM_226510
VERSION     NM_001106189.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 7971)
  AUTHORS   Ely D, Boehme S, Dunphy G, Hart M, Chiarappa F, Miller B, Martins
            AS, Turner M and Milsted A.
  TITLE     The Sry3 Y chromosome locus elevates blood pressure and
            renin-angiotensin system indexes
  JOURNAL   Gend Med 8 (2), 126-138 (2011)
   PUBMED   21536231
  REMARK    GeneRIF: The researchers found evidence that Sry3 is one of the
            genes associated with the increased risk of spontaneous
            hypertension Y chromosome phenotype in Wistar Kyoto rats
REFERENCE   2  (bases 1 to 7971)
  AUTHORS   Fischle W, Franz H, Jacobs SA, Allis CD and Khorasanizadeh S.
  TITLE     Specificity of the chromodomain Y chromosome family of
            chromodomains for lysine-methylated ARK(S/T) motifs
  JOURNAL   J Biol Chem 283 (28), 19626-19635 (2008)
   PUBMED   18450745
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JACYVU010000313.1.
            
            [WARNING] On Apr 3, 2024 this sequence was replaced by
            NM_001106189.3.
            
            On or before Jan 4, 2022 this sequence version replaced
            XM_039097638.1, NM_001106189.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA5760434
                              [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-63                JACYVU010000313.1  21828094-21828156   c
            64-646              JACYVU010000313.1  21715352-21715934   c
            647-864             JACYVU010000313.1  21664416-21664633   c
            865-1037            JACYVU010000313.1  21657916-21658088   c
            1038-1248           JACYVU010000313.1  21650851-21651061   c
            1249-1392           JACYVU010000313.1  21647137-21647280   c
            1393-7971           JACYVU010000313.1  21637104-21643682   c
FEATURES             Location/Qualifiers
     source          1..7971
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /map="19q12"
     gene            1..7971
                     /gene="Cdyl2"
                     /note="chromodomain Y-like 2"
                     /db_xref="GeneID:292044"
                     /db_xref="RGD:1309548"
     exon            1..63
                     /gene="Cdyl2"
                     /inference="alignment:Splign:2.1.0"
     CDS             40..1551
                     /gene="Cdyl2"
                     /note="chromodomain protein, Y chromosome-like 2;
                     chromodomain protein, Y-like 2"
                     /codon_start=1
                     /product="chromodomain Y-like protein 2"
                     /protein_id="NP_001099659.2"
                     /db_xref="GeneID:292044"
                     /db_xref="RGD:1309548"
                     /translation="MASGDLYEVERIVDKRKNKKGKWEYLIRWKGYGSTEDTWEPEHH
                     LLHCEEFIDEFNGLHLPKDKKVKSGKQAGASKLLRDARSLPVERLSHRPLEPGKSKST
                     SHKRKRVNSPLSRSKKGSSGKAPDRATKTVSYRTTPSGLQIMPLKKAQNGLENGDAGS
                     EKDESHFGNGSHQPDLELNDQLGEQETSDCDGTHSALVENGIGSALTNGGLNLHSPVK
                     RKLETEKDYVFDKRLRYSVRQNESNCRFRDIVVRKEEGFTHILLSSQTSDNNALTPEI
                     MKEVRRALCNAATDDSKLLLLSAVGSVFCSGLDYSYLIGRLSSDRRKESTRIAEAIRD
                     FVKAFIQFKKPIVVAINGPALGLGASILPLCDIVWASEKAWFQTPYATIRLTPAGCSS
                     YTFPQILGVALANEMLFCGRKLTAQEACSRGLVSQVFWPTTFSQEVMLRVKEMASCSA
                     VVLEDSKCLVRSFLKSVLEDVNEKECLMLKQLWSSSKGLDSLFSYLQDKIYEV"
     exon            64..646
                     /gene="Cdyl2"
                     /inference="alignment:Splign:2.1.0"
     exon            647..864
                     /gene="Cdyl2"
                     /inference="alignment:Splign:2.1.0"
     exon            865..1037
                     /gene="Cdyl2"
                     /inference="alignment:Splign:2.1.0"
     exon            1038..1248
                     /gene="Cdyl2"
                     /inference="alignment:Splign:2.1.0"
     exon            1249..1392
                     /gene="Cdyl2"
                     /inference="alignment:Splign:2.1.0"
     exon            1393..7971
                     /gene="Cdyl2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agacgcgcac acccggcgag ccaagttccg cagcctggca tggcttctgg ggacctttac
       61 gaggttgaaa ggattgtgga caagaggaag aacaagaagg ggaaatggga atatcttatc
      121 cgatggaaag gctacggcag caccgaggac acgtgggagc cggagcatca cctcctgcac
      181 tgtgaggagt ttattgatga gttcaacggg cttcacttgc ccaaggataa gaaggtgaag
      241 tcagggaagc aggccggagc ctccaagctc cttcgcgatg cccgcagtct gccagtggaa
      301 agactctccc atcgaccact ggaacccggg aagagcaaat caacttccca caagcggaag
      361 cgcgtcaact ctcccctgtc cagatccaag aaggggtctt caggaaaggc tccagacagg
      421 gccaccaaga ccgtgtccta taggactacc cccagtggct tgcaaatcat gcccctgaag
      481 aaggctcaga atggcttgga gaatggagat gctggctcag agaaggatga atcacacttt
      541 ggaaacgggt cccatcagcc agatttggag ttgaatgacc agcttggaga gcaggagacc
      601 agtgattgcg acgggaccca ctctgcactg gtggagaatg gaattggctc tgctctgacc
      661 aacggaggcc taaacctgca cagccccgtg aagaggaagc tggagacgga gaaggactat
      721 gtctttgaca aaaggctcag gtacagcgtc cgccagaatg aaagcaactg tcggtttcgt
      781 gacatcgtgg tgcggaagga agagggcttc acacacattc ttctatccag ccagacttcg
      841 gataacaatg cactgactcc tgagatcatg aaggaagtcc ggcgagcgct gtgcaatgcg
      901 gccacagacg acagtaagct gctgcttctc agtgctgtgg gcagcgtatt ctgcagcggc
      961 ctagactatt cctacctgat cggccgtctg tccagcgacc ggaggaagga gagcacgcgg
     1021 atcgcagaag ccatcaggga ctttgtgaag gcctttatcc agtttaagaa gcccatcgtg
     1081 gttgccatta atgggccagc attgggcctg ggagcctcca ttctacccct ctgtgacatc
     1141 gtatgggcca gtgagaaggc ctggtttcag acaccatacg caactatccg actcaccccg
     1201 gctggctgtt cctcctacac cttcccccag atcctgggtg tggcgctggc caatgaaatg
     1261 ctgttctgtg ggcggaaact cactgcccaa gaggcatgta gccggggcct tgtgtcgcag
     1321 gtcttctggc ccacgacttt cagccaagag gtcatgctgc gggtgaagga gatggcgtct
     1381 tgcagtgctg tggttttaga ggactccaaa tgcctggtcc gaagcttcct gaagtcagta
     1441 ctggaagacg tgaacgagaa ggagtgtctc atgctgaagc agctctggag ttcttccaaa
     1501 ggcctggact ccctgttcag ctacctacag gacaaaatat atgaagtttg aagggcccca
     1561 gctcacctgc cccattgcta aagggtctct gacttccagc cgggccctgt gtttctacca
     1621 tcggagccca gggtccaccc tagccaagag tttgtcacgg tgtgtcttta cacctacggt
     1681 tgtatccatt cctcgtgccc ttcggttgtt cctcattggt ttgattttgt gtaaaggtgg
     1741 gaaacgtagc acccttggcc tccccatgtc cctgtcccag ccagccatag aaccttccag
     1801 ggatccatct tcccagtgct ccgccaggca ctgtctgttg acctttccct gcactagcca
     1861 aaaggctcct accatggtcc agaagaggaa gaccaacctc cctcatcctc ccaactcagg
     1921 ctgtgtctac acagtgcctc caacctggag gagatgaggc catcacagtt ctctggttat
     1981 gtgatctggg accaggggac aatatcttag ggaattcaca gaccaacaag cgtgtggcaa
     2041 gcactcgact acataggcct ggcttcaatc ttctctccaa tgcaactcgg cgtgactctt
     2101 agggcttggt cttaaaaccc aactgagtga tttacaaacc cagataattg tacattttag
     2161 aaatgttttg ttaaatatat atttttaaaa caacgtaagt ggaaattctg ataatttatg
     2221 tgtattatat gtaaagctag ttttgcaaaa aagaaaaaag aaacatgact tactaggaaa
     2281 tttttttctt tattcgggtt tattttattt atttattttt gttgtttata tattatggag
     2341 tctattgttc acacagatct tattttcata ccaccctgga ccaaatacta tccgaggtgc
     2401 acgccgtttg gtgcgttctc acgatgagcc acgtggaaag aaaaggagat aagaacggat
     2461 taaagcctgt ttcagactct ctgcgtgctg cccttagggc agaatgccag ttctctaatc
     2521 tttgaggaca agtcatggtg gcattttttt ctttcagtcg ctatcattca ggagaaatgg
     2581 aggactcttg ttagacccat ccctaagtgt gtgatgttca gaagggatgg gagcagctta
     2641 tctttaggat aatacattgc ctagggtgag acattttttt gctctgggat aaataagtga
     2701 acttggattt ccaagacctt tccttccata tggacgttaa tgtcttggtt ggccttctgg
     2761 gggtgttgag gaagagaact cagtctcaag agtttcttca cggtccaaac ctgaacacta
     2821 aatctttaat ttttttttta agctgggaga aaacaaaaac aaggatggct ctaactagca
     2881 gggcggtctc cttgcctcac tggccctagc ctactggagg cctccaatag ctgtctttat
     2941 gtcacccaat caaagtccct gattctgcac tgagggagag tttcagtttg agttggtgaa
     3001 gagacaggaa atggaaggga ctccttgtga ttggggcctt aaacctattt gctcagagaa
     3061 aaattagacc atgacggagg ctggaggggc caggctagct ctagatgggt tacaaccttg
     3121 actgttgttc tttttcttca attccctctg agtttccagc ctttcttaac ccttccttag
     3181 ggacaatggg gtacagcaca gagtcggccc agtttgtgga gggggtgggg aaggtaggct
     3241 gaaaaagtag agatggttgt ttgcctgccc ttgagtggga atagctgccc cccagtcaca
     3301 agtagaaggg atgcctggcc ctaagctttg aatgacccag gtggctggat gcttgcatga
     3361 tgattagtga agtgaccctc taaatagtgg ctcccacatg cacttggcct tgaatgacct
     3421 tgcttggctc tgtagaaatg ctttagagct cagaagggtt tgagaagaga agacttttac
     3481 ttctctattc accaccagcc tgtcccgcct tggccatgag gggcctgaga atatagtcac
     3541 cttggttgtg tttggtcaca ggaaaatgga atggaagctc gtagctccct ggagtcccta
     3601 taatactgta ggaactgtgg actagggtat agagaattaa cgcaggagaa cgcctgggtc
     3661 tgctgttgtc ccttctccat tggatgtaca cttcctgcaa acccttataa cagcttttgt
     3721 tctttaggtg tctgagaaac tcttaactga ctgctgcttc tgtaggagcc ccctccccca
     3781 accccatgct ttctgattag cttctgatcg agccagtttt gtccacgggg aagcaagttg
     3841 tcaggattct ttctagaaac attacaggat gcatctttga ctcccattga cacaaccaga
     3901 gatgctttct ctttaggtgt tggacgagcg ccaaacttgc gaacgtgcag agaacccgtg
     3961 atgacttggg tagatagaca cggactattt ctaaggtaga attcacactg cttgtttttt
     4021 taaagactgt gttttatctg tttgaagggg gtagctctgt cccatgggca caagtctttt
     4081 tagtcaacct actgggccgg ctgaatcatg agagttggta ttttcaggct ggctgttggg
     4141 atagcgtcgg gttgaaatcc agatgaccta cataacagta tattgagctg ggatggaaaa
     4201 tacccattga gtggttgtgt ccaggttatc ctaaaagctt tattgaggta gggtgctggc
     4261 tcccatcttt tactttgtac cccagtgtcc cctctcctcc catgaggccc ttctgcttgt
     4321 cccattactc tctgttcctt tccgcatacc cctttcctag actcggagta agtctttgcg
     4381 gaattgtaga tggtctttgg agagacagct ataggcaaga ggtggagact tcctcttctg
     4441 agtcaaggtt tcctttagca agccaattgg aactctcctc tgtttaccaa aaccttggtg
     4501 gtggcaactc ccagcaatct cataggacac tgctgaggtt aactgctcca atcccaggcg
     4561 acttttgaag cgttatggtt aagatggcca gaccccctca gcactgggaa gccaccccct
     4621 actgtggtgt tcttttcagg tgacccttta ctgcatagag gcaaaatctg aaggaaactc
     4681 gtatgctgag aaggcaggga ctacttgtag gaaataggga actgacagaa aaatcttgtt
     4741 ctgtggcgta gaccaaactg ggaactgtcc tctgagaagc gggaaaagac gacttctctg
     4801 tgtgaagttc aacctgggga taggaaaata atgacaggag actttggaca acacaattat
     4861 atctccgaat ccctctttta caaacagcct ttactgaacg ctgaattgtc tccctcatta
     4921 ccaactgctg gtttcaagag cctcttaaat ggtttgttaa aaaaagttgg ttttttttta
     4981 atttggaatt tagtcctatc cacacacttt taaaacctag tttctgtaga aggtttttgt
     5041 tttgtttttt ataaaaataa aaaatagaga catccacaaa tcttcctatg gggatatttt
     5101 gaaggaaggc ttgcttctct cctgtgtttc tgtattaaga tacttagatc tgttgtatat
     5161 atgagtcaag atgccctcac taatatacac agtatttaag actccaaatg agatttctta
     5221 agtattttat tttattctct gtacatggtt ttgtagaatc ttggaaattt acactttggt
     5281 tttgtagata tatatctttg gggagggagg ttgtcttgca tgtgtgtttt ttgttgtagc
     5341 taagtgttac attgtccttt ctgcaggctt tggttgaaat gcttaataga ctttaataca
     5401 gtaaatatat tttcagaata taaactttta tatttctgtg gtaaattagg acatgcgttt
     5461 taggcaatct tttccattaa tatcacttct tccttctggg ggaaaatata tatctcatat
     5521 tggtttggtg ccaatgtttt gtttttttgg ttcttaattt tcttttattt aaaatcgggt
     5581 agtcttacat ttttaagaaa tcaagtcaac tttcttttcc tctagaagtc attgcgtttg
     5641 aaatctaatt tgaaaatgta ttgaatctgc gaataagcct taccattagg ttcaataatc
     5701 cttctgacct ttcaaaacta cacgtgtagc tcaagatctc cccttccccc ccccccataa
     5761 attctcactg tgtggcagtt gatggagttc agaaaagagc cttaagcttg ttgcaaaata
     5821 ataataataa taataaatta attaaaaggg taatacgggt tgtttcctcc atgtaagcca
     5881 tgttggtggg ctcagtgcag tctgtaagtc attcatggct aatctgaagg gagtagtgga
     5941 aggagctgat ggcgccaggg accaggtggc atcctcggcg aatgtctttg gccataagag
     6001 tggaccaagg gtaggttttc taagccactt tcattctagt agtatggttg agggatggtg
     6061 acagggaggg ctgctaaatc atcatttgtt ctcaacaagt gacatttcct gctcctgacc
     6121 ctgttgggga ccccagggta gctaaagtcc gtgctctctg agagatgtta gcaaagttta
     6181 cattaagagt cttgctgtgt agacaatctg gagtcagttt ttgttccatc ttcaacatcg
     6241 ccatgtgtcc ttggtgtttc tatgaggaag tgtgtgtcaa gctatactag agtggaatgt
     6301 agctggatga aggtattgta gctacagagc gggaacagta agtgatagag tatgtccagg
     6361 gctgtttcga tggtgcaaaa atctcagaaa tagacttagg tcttaaaaat caagttataa
     6421 tgtcttttgg ccagtggtac tccagccacc accagctgat tctccttacc cacccttgaa
     6481 atgggaactt gcatttaggg ctatgtgact tagcatgagg tccatctcta caaagtgttc
     6541 aaagtcactt tctcagcctt taaggattaa gattggcatg tatgtcagtc agaagacatg
     6601 atgtctagag ttaagcttca gccttatatc tctgggtttg tctcacctct ttatcccaac
     6661 atctagtctg atgcaggagc ttgtcaactc tgagatgctc agagggtgat tgttgactcc
     6721 aggatgttca gagggtgatt gttaactctg ggaagttcag gggggtgatt gttgactttg
     6781 ggatgttcag agggtgattg ttgactccag gaagtttaga ggatgattgt gagttctcca
     6841 tctagtcttg aacttgccat cgtgccatta gtcccagctt gaagttattt ttctaatgtc
     6901 tacattaaca agattatgaa aaataattgc ctttcataaa accaaggacc aaagattcca
     6961 ttattccaac caagcttgag tttcataagc tgcaggcaca tctgggttca gatgtgtgag
     7021 cttcacagca cagaggaacc cttggttcct cctaccacca aaccaatgct ccctgactag
     7081 ccatgcagag aagttgaata tctcttgaaa aggctctgaa ggaagagttt ctgagatggg
     7141 aacttagtat ctcaggtggg tgtttccgct gtatagcctc aagttttcat ttatcccatt
     7201 ataaagtgga ggtcagagat tccccttcgg gtctctaacc atggtcaact cttacatttg
     7261 catgtgggcc tccatctgtt ttgcagttag gagttaggtc ttcagtggta catcctgtga
     7321 ctgccagatg tccatctctt tagttcctca tcgagccatc ccacttcctg cttggtagaa
     7381 caagaatgtt cccggtgccc ccaccagggg tttccccatt ttcaacctca ctcacgatga
     7441 tgccattggc ctctaactaa tccagaagac taaatgttaa agaaggggta ttctactggt
     7501 aaggcttatt acccaacttc tgatactaaa gccagctacc aaaaacatat ccagctcacc
     7561 ctgggagtgt ttgggttgga tcatggacgt agcaaacaca ccaaaatcca tgaatacctt
     7621 tgcaggttag gttgctcatt ttctttttgc tagattttca caggaaggtc tttagttctg
     7681 gatccttgta agtatgagtc ctccatagca tcatatgcag gtatagctgg tccattctcc
     7741 acactgtaaa tatttttccc aaactgggtg cagtactgag ggtaataatc ttctgattta
     7801 tcaaatgctg actgtctgga gcaaatcgtc cgctctttgt gaatggtcct gtaacgtata
     7861 tgaacatatt tctgggtgcc ttagaagttg tatttttcat gtgtgctaat atgcagtatt
     7921 tatacattgt gagaagctgc tttgaataaa aagattgaaa ctttgtctcc a
//
