LOCUS       XM_340933               3449 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus cerebellar degeneration-related
            protein 2-like (Cdr2l), transcript variant X1, mRNA.
ACCESSION   XM_340933
VERSION     XM_340933.9
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_340933.8.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3449
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3449
                     /gene="Cdr2l"
                     /note="cerebellar degeneration-related protein 2-like;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 7 ESTs, 2 Proteins, and 99% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     183 samples with support for all annotated introns"
                     /db_xref="GeneID:360656"
                     /db_xref="RGD:1306881"
     CDS             56..1456
                     /gene="Cdr2l"
                     /codon_start=1
                     /product="cerebellar degeneration-related protein 2-like
                     isoform X1"
                     /protein_id="XP_340934.5"
                     /db_xref="GeneID:360656"
                     /db_xref="RGD:1306881"
                     /translation="MRRAAGMEEYSAEEEESWYDHQDLEQDLHLAAELGKTLLERNKE
                     LEESLQQMYSTNEEQVQEIEYLTKQLDTLRLVNEQHAKVYEQLDLTARDLELTNQRLV
                     LESKAAQQKIHGLTETIERLQSQVEELQAQVEQLRGLEQVRVRREKRERRRTIHTFPC
                     LKELCTSPRRCEDAFRLHSSSLELGPRPLEQENERLQTLVGVLRSQVSQERQRKERAE
                     REYTLVLQEYTELERQLCEMEGCRLRVQELEAELLELQQMKQAKTYLLARDEHLAEAL
                     LAPLTQAPEADDPQPGSGDDPNAQDGVSSPAASPSHAVRKSCSDTALNAIVAKDPASR
                     HAGNLTLHANSVRRRGMSILREVDEQYHALLEKYEELLSKCRQHGAGVRHAGVQTSRP
                     ISRDSSWRDLLGGEESQGEGKAGEKSLSQHVEAVDKRLEQSQPEYKALFKEIFARIQK
                     TKADINATKVKTHSSK"
ORIGIN      
        1 tgcgagccca ggccctgagc tgccgcagcg cccgcccacc gccacccgcg gggccatgcg
       61 gagagccgcg gggatggagg agtactccgc agaggaggag gagtcctggt acgaccatca
      121 ggacctggag caggacttgc acctagcggc agagctcggg aagactctgc tggagagaaa
      181 caaggagctg gaggagtccc tgcagcagat gtactctacc aatgaggagc aggtgcagga
      241 gatcgagtac ctgaccaagc agctggacac gctgaggcta gtgaatgagc agcatgccaa
      301 agtgtacgag cagctggacc tgactgccag agacctggag ctgaccaacc agaggctggt
      361 gttggagagt aaggctgccc agcagaagat ccatgggcta acagaaacca tcgagcgcct
      421 gcagtcccag gtcgaggagc tccaggccca ggtggagcaa cttcgaggcc tggagcaagt
      481 ccgggttcgc agggaaaagc gggaacgcag gagaaccatc cataccttcc cctgcctaaa
      541 ggagctgtgc acgagtcccc gcagatgtga ggatgccttc cgcctacaca gttcctcgct
      601 ggagctgggt cctcggccgc tggagcagga aaacgaacga ctgcagactt tggttggggt
      661 gctccgttcc caggtgagcc aggagcgaca gcgcaaggag cgggcagaac gtgagtacac
      721 tctggtgctg caggagtaca cggagctgga gcgacagctg tgcgagatgg agggctgccg
      781 cctgcgcgtg caggagctgg aggccgagct gctggagctg cagcagatga agcaggccaa
      841 gacctacctg ctggcccggg atgagcacct ggccgaggct ttgctggcgc ccctcactca
      901 ggcccctgag gctgatgacc cccagccagg aagcggagat gaccccaatg cccaggatgg
      961 tgtctcctcg cctgcagctt cccccagcca cgcggtgcgc aagagctgca gcgacacggc
     1021 actcaatgcc atagtggcca aagacccagc cagccggcac gctggcaacc tcactttgca
     1081 tgccaacagt gtgcgcaggc gcggtatgtc tatcctgagg gaggtggacg agcagtacca
     1141 cgccctgctg gaaaaatacg aggagcttct gagcaagtgc cggcagcatg gtgccggggt
     1201 gcggcacgcg ggggtgcaga cctcacggcc catctcccgg gacagctcat ggagggacct
     1261 actggggggc gaggagagcc agggggaggg caaggcgggt gagaagagcc taagccagca
     1321 cgtggaagct gtggataagc ggctggagca gagccagcct gagtacaagg cgctcttcaa
     1381 agagatcttt gccaggatcc agaagaccaa ggccgacatc aacgccacca aagtcaagac
     1441 gcacagcagc aagtgacccc tctctaggcc tgtagcttcc ctctgcctcc tctccagagg
     1501 gggtctgtca ggcctggatg gcagcctctt ggcaagtgag agagcccttt acgcagcaat
     1561 ataccatagc tggtggctgg agcatgggca aggaaagcct ttctgatcta agggacacag
     1621 catatctcct gctggtggcc cagctcactt gttctgcctc ccttggccac tttgcttcag
     1681 cttgaaggca cagctcagtt taaaagccaa acacactccc cacccgccac tgccaccctg
     1741 ccactgtccc ctcagcttct ggaccccagg cccctgaccc tcagctcgcc cccagtcttc
     1801 tgcaagcctt tccggcttca ccctccaaag ttgtctttct gagagatttg caatgcaggg
     1861 ccgcccgaag ccttgtcaca actggaaaca cttgaaaggg ggcctcagag ccagccattg
     1921 ctggtgtctg gggtctccta gaccgtccac tgcttctcgc cagtcatacc gtcattcgct
     1981 tagcaccagc tgtaccactc ccagatctgg gcagggcacc gatagctccc tcccaccttg
     2041 cagagcagga agctttagct aggctccact gtacccgctc cgccctggca aatgccttca
     2101 gctcaccaca gacctgtagc caatccgaat agaggaagag ggagcccctc gacagccata
     2161 catgggtagt gttcctttcc tctgagagcc aagttccatt cctggaatta ccttctgggc
     2221 atgaagcctc cagggtctgg gatgaaggga cctcccccga gcctatgaac caccaatgct
     2281 tccctccctt tctctgtgct tgccctcatc tcagggacca tgacgtctct catccaccct
     2341 ctcttcctca ggccaaccct gggacagttc acatctgcag ccttcagaat gtctatgtgg
     2401 gtgtcaccag cccaggtcca agtgttcatt cctgtccttc accagggact gcggggtcct
     2461 tactagtttt gattggttgg gttttgttct gggtgtttgt ttgtttgttt gtttctctct
     2521 ctctctctct cttttttttt tttttccccc ccggagctga ggaccgaacc cagggccttg
     2581 cgcttgctag gcaagtgctc taccactgag ctaaatcccc aacccagttt ttgtttgttt
     2641 tgttttgttt tgttttgaga cagggtttct ctgtgtatcc ttgactgtcc tggaactcgc
     2701 tctggaccag gctggcttcc aactcagaga tcctcctgcc tctgcctccc aggcactggg
     2761 tgtgatccac tactgccggg ccctcatgtt gtgctgtatt cttaagttga ggaagaaatc
     2821 tctcccttcc caccttttta cagaacacct gctccttatc tcccacttct atgggggtgg
     2881 cttttgaggc tccatctgga tgaggggttc aatattttag tctaaaactt cagaaagtca
     2941 agcatcatct aaaacatgcc cagggccccg gcttgtcctc agcagccctt cagggcttct
     3001 ggttccttcc accacccttc ccaggattct agaaatcaaa ggagccatac aatccagtag
     3061 gaggcagtga ctctggcctc agtgctggga gcccagtggg aaccgtcatg ccttacctcc
     3121 gtctaatggg taaagggctt tcttaccaag catgtctgac atccctggag aggctgtgtt
     3181 gtttcaggtg gcactgtaat gccagctgac aaccagatcc ttctgttcac cttacttgga
     3241 accttttttt gtcctttggg gccgggcacc tgcagaccct ctgtgtgtcc ctgtcatgtg
     3301 gggattgggg aggaattcag gcctgttcac ttccccagtt ctgtagcagc cgatcagtgt
     3361 cacctttgaa gtatacctga gagaaatata tttacaaatg ctttattctc ttctttaata
     3421 aaaaatgcac cagtattcta aaagcacaa
//
