LOCUS       XM_039100421            3128 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus cerebellar degeneration related 1
            (Cdr1), mRNA.
ACCESSION   XM_039100421
VERSION     XM_039100421.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 4 indels
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-910               JACYVU010000476.1  1298812-1299721     c
            911-911             "N"                1-1
            912-988             JACYVU010000476.1  1298735-1298811     c
            989-1189            JACYVU010000476.1  1298464-1298664     c
            1190-1357           JACYVU010000476.1  1298294-1298461     c
            1358-1438           JACYVU010000476.1  1298160-1298240     c
            1439-1439           "N"                1-1
            1440-1693           JACYVU010000476.1  1297906-1298159     c
            1694-1804           JACYVU010000476.1  1297719-1297829     c
            1805-1805           "N"                1-1
            1806-3128           JACYVU010000476.1  1296396-1297718     c
FEATURES             Location/Qualifiers
     source          1..3128
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3128
                     /gene="Cdr1"
                     /note="cerebellar degeneration related 1; The sequence of
                     the model RefSeq transcript was modified relative to its
                     source genomic sequence to represent the inferred CDS:
                     inserted 3 bases in 3 codons; deleted 2 bases in 1 codon;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 4 ESTs, 1 Protein, and 41% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:120099288"
                     /db_xref="RGD:6499092"
     CDS             155..1903
                     /gene="Cdr1"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 3 bases in 3 codons;
                     deleted 2 bases in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: uncharacterized protein
                     Cdr1"
                     /protein_id="XP_038956349.1"
                     /db_xref="GeneID:120099288"
                     /db_xref="RGD:6499092"
                     /translation="MDFQEDLDFLEDLDFLEDLDFLEDLDFLEDVDFSEDLDFREDLD
                     FQEDMDFSGTLGFLEDVDFIEDLDFLEDLDFLEVLDFWEDLDFQEDLDFPEDMDFWED
                     LDFGKTLDFQEDLDFQEDMDFLEDMDFQEDMDFQEDVDFREDLDFREDLDFQEDLDFQ
                     EDLDFWEDMDFREVLDFREDMDFREVLDFWEDLDFQEDLDFWEDMDFREVLDFWEDLD
                     FREVLDFQEDLDFQEDLDFQEDLDFLEDLDFREDXGFWEDVDFWEDMDFLEDLDFLED
                     LDFQEDVDFREDLDFQEDMDFQEDLDFQEDLDFWEDMDFWEDMDFLEDLDFPEDLDFP
                     EDMDFRKTWIFEDLDFWEDMDFLEDLDFREDLDFLEDLDFLEDLDFQEDMDFQEDLDF
                     WVDMDFWEDMDFWEDMDFLEVLDFREDLDFPEDMDFXEDVDFQEDLNFQEDMDFQEDL
                     DFWEDMDFWEDLDFLEDLDFREDLDFWEDLDFREDLDFREDLDIWEDLDFREDLDFSG
                     RLDFFEDLDFWEDMDFEEDMDFWEDLYFREDLDFWEDMDFQEXHGFLGRHGFSGRPGF
                     SGRLGFLGRLEFFRKT"
ORIGIN      
        1 ttttctgaag acatgaattt taggaagatg tggattttca ggaaggagtg gattttcagg
       61 aagacatgga ttttcaggaa gacgtggatt ttttggaaga cgtggatttt cacgaagact
      121 tagattttct ggaagaagta gattttcgga agatatggat tttcaggaag acttggattt
      181 tctggaagac ttggattttc tggaagactt ggattttctg gaagacttgg attttctgga
      241 agacgtagat ttttcggaag acttggattt tcgggaagac ttggatttcc aggaagacat
      301 ggatttttct ggaacacttg gatttttgga agacgtggat tttatagaag acctggattt
      361 tttggaagac ttggattttc tggaagtctt ggatttctgg gaagacctgg attttcagga
      421 agacttggat tttccggaag acatggattt ttgggaagac ttggattttg ggaagacctt
      481 ggattttcag gaagacttgg attttcagga agacatggat tttctggaag acatggattt
      541 tcaggaagac atggattttc aggaagacgt ggattttcgg gaagacttgg attttcggga
      601 agacttggat tttcaggaag acttggattt tcaggaagac ttggattttt gggaagacat
      661 ggattttcgg gaagtcttgg attttcggga agacatggat tttcgggaag tcttggattt
      721 ttgggaagac ttggattttc aggaagactt ggatttttgg gaagacatgg attttcggga
      781 agtcttggat ttttgggaag acttggattt tcgggaagtc ttggattttc aggaagactt
      841 ggattttcag gaagacttgg attttcagga agacttggat ttcctggaag acttggattt
      901 tcgggaagac nttggatttt gggaagacgt ggatttttgg gaagacatgg attttctgga
      961 agatttggat tttctggaag acttggattt tcaggaagac gtggattttc gggaagactt
     1021 ggattttcag gaagacatgg attttcagga agacctggat tttcaggaag acttggattt
     1081 ttgggaagac atggattttt gggaagacat ggattttctg gaagacctgg attttccaga
     1141 agacttggat tttccagaag acatggattt taggaagacg tggattttcg aagacttgga
     1201 tttttgggaa gacatggatt ttctggaaga cttggatttt cgggaagact tggattttct
     1261 ggaagacttg gattttctgg aagacttgga ttttcaggaa gacatggatt ttcaggaaga
     1321 cttggatttt tgggtagaca tggatttttg ggaagacatg gatttttggg aagacatgga
     1381 ttttctggaa gtcttggatt ttcgggaaga cttggatttt ccagaagaca tggattttna
     1441 ggaagacgtg gattttcagg aagacttgaa ttttcaggaa gacatggatt ttcaggaaga
     1501 cttggatttc tgggaagaca tggatttttg ggaagacctg gattttttgg aagacttgga
     1561 ttttcgggaa gacttggatt tttgggaaga cttggatttt cgggaagact tggattttcg
     1621 ggaagacttg gatatttggg aagacttaga ttttcgggaa gacttggatt tttcaggaag
     1681 acttgatttc ttcgaagact tggatttttg ggaagacatg gattttgagg aagacatgga
     1741 tttttgggaa gacttgtatt ttcgggaaga cttggatttc tgggaagaca tggattttca
     1801 ggaangccat ggatttttgg gaagacatgg attttcggga aggcctggat tttctggaag
     1861 acttggattt ttaggaagac ttgaattttt caggaagact tgaattcttc aggaagactt
     1921 ggatttttgg gaagacatgg atttttggga agccatggat ttttgggaag acttggattt
     1981 tcaggaagac atggattttc tggaagactt agatttttca ggaagacttg aattcttcag
     2041 gaagacttgg attcttcagg aagacttgga ttttcaggaa gacttggatt tttgggaaga
     2101 cttggatttt taggaagatg tggatttttg ggaagaagtg aatttttcag gaagacatgg
     2161 atctttggga agacatggat tttcaggaag acatggattt ttcggaagac ttggattttc
     2221 aggaagactt ggattttccg gaagatgtgg atttcttgga agacatagat ttgatggaag
     2281 acaaagattt tctggaagat gtggatatga tggaagacta ggtgatcact ggaagacata
     2341 gatattggga agacctgaat tatctggaag acgaggattg tttggaagac aatgatatgt
     2401 ggaagacgta gactgattct ggaagacatg aattttctgg aagacatcaa tcttcaggaa
     2461 gacatcaatc ttcaggaaga cattgatctt caggaagaca tatcttggct ggaagacctc
     2521 gaggttattg gaagacgtga attttcagga agacgtggat ctactggaag acctgcattt
     2581 agtggaagac atgagtttct ggaagacttg aactggtgga agacacagat gatctggaag
     2641 acctagattt ttctggaaga catggattgg ttggaagacc tggatatttt tctggaagac
     2701 actgattttc aggaagaact ggattttgtg gaagacgcag gcttttctgg aagacgtaga
     2761 ctgtaatgga agacatggat ttttgtggaa gacatggatt ttccccggaa gacatgaatt
     2821 tttctggaag acgtagattt tcctggaaga catgaatcct ttggaagaca aagattttcc
     2881 tggaagacac agattttcct ggaagatcta tataccatga aagatctagt taccatggaa
     2941 gactcaattt actggaagac ttggaggttg ttggaagaca tgtgtcatct ggaagacata
     3001 ttttctggaa gatcaggatt atctggaaga ccttgacagt gttggaagac ttgcagttac
     3061 tggaagacct ggagatgttg gaagaccttg gtactggcac cactggaaac ccctagatat
     3121 tggaaaca
//
