LOCUS       NM_001401168            1289 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus cysteine rich, DPF motif domain containing 1
            (Cdpf1), transcript variant 1, mRNA.
ACCESSION   NM_001401168 XM_017594998
VERSION     NM_001401168.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1289)
  AUTHORS   Florea,L., Di Francesco,V., Miller,J., Turner,R., Yao,A.,
            Harris,M., Walenz,B., Mobarry,C., Merkulov,G.V., Charlab,R.,
            Dew,I., Deng,Z., Istrail,S., Li,P. and Sutton,G.
  TITLE     Gene and alternative splicing annotation with AIR
  JOURNAL   Genome Res 15 (1), 54-66 (2005)
   PUBMED   15632090
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000007.1.
            
            On Feb 3, 2022 this sequence version replaced XM_017594998.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643294.30263.1,
                                           SRR26643290.27346.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-380               JAXUCZ010000007.1  118784904-118785283 c
            381-496             JAXUCZ010000007.1  118784555-118784670 c
            497-609             JAXUCZ010000007.1  118783049-118783161 c
            610-721             JAXUCZ010000007.1  118782135-118782246 c
            722-1289            JAXUCZ010000007.1  118780845-118781412 c
FEATURES             Location/Qualifiers
     source          1..1289
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q34"
     gene            1..1289
                     /gene="Cdpf1"
                     /gene_synonym="RGD1306001"
                     /note="cysteine rich, DPF motif domain containing 1"
                     /db_xref="GeneID:362975"
                     /db_xref="RGD:1306001"
     exon            1..380
                     /gene="Cdpf1"
                     /gene_synonym="RGD1306001"
                     /inference="alignment:Splign:2.1.0"
     exon            381..496
                     /gene="Cdpf1"
                     /gene_synonym="RGD1306001"
                     /inference="alignment:Splign:2.1.0"
     CDS             497..856
                     /gene="Cdpf1"
                     /gene_synonym="RGD1306001"
                     /codon_start=1
                     /product="cysteine-rich DPF motif domain-containing
                     protein 1"
                     /protein_id="NP_001388097.1"
                     /db_xref="GeneID:362975"
                     /db_xref="RGD:1306001"
                     /translation="MASEAEPHPLGMFKCQLCALTAPYSYVGQKPPDTQAVVLLEESY
                     IMKDPFSSDKARFLILGSRCSVCSRLVCVDPECSLFYSKRVCLPCVQKNISAFPQEIQ
                     QDVEKRKGASKKHSNRP"
     exon            497..609
                     /gene="Cdpf1"
                     /gene_synonym="RGD1306001"
                     /inference="alignment:Splign:2.1.0"
     exon            610..721
                     /gene="Cdpf1"
                     /gene_synonym="RGD1306001"
                     /inference="alignment:Splign:2.1.0"
     exon            722..1289
                     /gene="Cdpf1"
                     /gene_synonym="RGD1306001"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcgctctggg gttctcggcg gggaggtggt gagtgtcccc ggaccgtgtg gcgctggaac
       61 acgcgtagcg agctggactg tgttccctcc actccccggc tcgctgggtc tggcctagct
      121 gcctctggaa gccgagggga ggcgttagat accccgctta gagcgcaggg agggccgtgc
      181 gcgggtggct ggtggatggc tcggtccgtg gtgcagcgga gccctgatga cctggggaga
      241 ctctgagcgg gaggaggagg aggccccgcg gagccgcgct gtcctgggat tgtctcctga
      301 ctgtcacctg ctgcaagggc agtgcgccca gtagcctcgg caaggacctg tgacatgcga
      361 attaagatac cactagctag acagctgctg ttgccgccag accactgatc ctacaatttg
      421 cggagaggtg gggcttccaa gaccttgaat gtaagaggag tgccatcaaa atcgtctccc
      481 caccccaacc tccccgatgg catctgaggc agagccccac cccctgggca tgtttaaatg
      541 ccagctttgt gccttaacag ctccttacag ctatgtcggg cagaagcccc cagacaccca
      601 ggctgttgtc ctcctggagg agagctacat catgaaggat cccttctcct cagacaaggc
      661 caggtttctg atcctcggtt ctcggtgcag tgtgtgcagc aggctggtgt gtgtggaccc
      721 ggaatgcagc ctgttttact ccaagagggt ctgcctcccc tgtgttcaga agaatatcag
      781 tgctttccct caggaaatcc agcaggatgt ggagaagaga aagggtgcca gcaagaagca
      841 ctccaaccgt ccctgactgg caggggcaca gcctcctgtg aagcattggg ctgggctagg
      901 cccggattcc agctgggagc tgtgtatctg gtcttctctg aactgtgtgg ggtacgtgca
      961 gtctcaggaa ctgaggaact ggccaagact gaggacagac agcaggagtg tagccagctg
     1021 gagctccaga cctggccgct agtggaggcc aggagtgagg gagaggggcc tccatttgat
     1081 agctggtaga cacttcctgt agatgtacat gcaggcttct ctccagacat ccacataaca
     1141 cagtgtcatc atctgtcatc tagggaaatc agcctctgag ggacagaggg tatgcaaggg
     1201 ttatgtcaca tcctctataa ccgccttgga catgatttaa accttgactc tgtatcatat
     1261 ttataattaa aaacccgaag gataagcta
//
