LOCUS       XM_006242793            7102 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus cell adhesion associated, oncogene
            regulated (Cdon), transcript variant X4, mRNA.
ACCESSION   XM_006242793
VERSION     XM_006242793.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006242793.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006242793.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7102
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7102
                     /gene="Cdon"
                     /gene_synonym="Cdo"
                     /note="cell adhesion associated, oncogene regulated;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 18 ESTs, 1 long SRA read, 8 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 141 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:50938"
                     /db_xref="RGD:708433"
     CDS             312..3728
                     /gene="Cdon"
                     /gene_synonym="Cdo"
                     /codon_start=1
                     /product="cell adhesion molecule-related/down-regulated by
                     oncogenes isoform X2"
                     /protein_id="XP_006242855.1"
                     /db_xref="GeneID:50938"
                     /db_xref="RGD:708433"
                     /translation="MHPDLGPLWKLLYVLVILCSSVSSDLAPYFISEPLSAVQKLGRP
                     VVLHCSAKPVTARISWLHNGKRLDRNTEQIKIHRGTLTILSLNPSLSGCYQCVANNSV
                     GAVVSGPATVSAAALADFDSSTMHVITAEEKNTGFIGCRVPESNPKAEVRYKIRGKWL
                     MYSTGNYIILPSGNLQILNVSSKDKGSYKCAAYNPVTSELKVEPAGRKLLVSRPSSDG
                     FHILHPALSQALAVLPHSPVTLECVVSGVPASQVYWLKDGQDALSGSNWRRLYSHLAT
                     ASIDPADSGNYSCVVGNNRSGDVKHVTYTVNVLEHASISKGLHDQKVSLGATVRFTCE
                     VHGNPAPNRTWFHNAQPIRPSSRHLTEGSVLKITGVIMEDSGLYQCMADNGIGFMQST
                     GRLQIEQVPFETNTKAEPVTPSEASQNDERDPRDGSESGLLNLFPVKVHSGGVELPAE
                     KNASVPDAPNILSPPQTHMPDTYTLVWRAGRDGGMPINAYFVKYRKLDDGSGAVGSWH
                     TVRVPGSESELHLTELEPSSLYEVLMVARSAVGEGQPAMLTFRTSKEKMASSKNTQAS
                     FPPVGIPKRPVTSEASNSNFGVVLTDSSRHSGVPEAPDRPTISMASETSVYVTWIPRA
                     NGGSPITAFKVEYKRMKSSDWLVAAEDIPPSKLSVEVRSLEPGSIYKFRVIAINHYGE
                     SFRSSASRPYQVAGFPNRFSNRPITGPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQG
                     FYIYYRPTDSDNDSDYKRDVVEGSKQWHTIGHLQPETSYDIKMQCFNEGGESEFSNVM
                     ICETKVKRVPGASEYPMKELSTPPSSSGNGGNVGPATSPARSSDMLYLIVGCVLGVMV
                     LILLVFIALCLWKSRQQSAIQKYDPPGYLYQGSEINGQMVEYTTLSGTARINGSVHGG
                     FLSKGSLSNGCSHLHHKGPNGVNGILNGTINGGLYSAHTSSLTRTCVEFEHPHHLVNG
                     GAVYTAVPQMDPLECINCRNCRNNNRCFTKTNSPLPVVPVVASYPQDGLEMKPLGVMK
                     FPVCPVSTVPDGGQIPEECLKDSVAPAPTQRTCRQDNTSDINSDSTEDTAEFNRGDSS
                     GHSEAEDKVFSWSPLILSPVLEDCSEKTAWSPPGPPLDGLSVVLQQAQET"
ORIGIN      
        1 gagcccgggt gcccggctcg cgcggctcgg tacgagacgg ggacctcgcg ccgccccagc
       61 gcccccgccc cgcgtgagag gcgccgcgcc ctccggccgc cctgcccggt gcatggaggg
      121 gcccgttcgg atcgcagccg ccgccgtcgc cgccgccgcc gtcgccagag agcgggggga
      181 tgacctgggg gtggctctcg gagccggctg ctgtgcagga ggtctcgggg cttagccagc
      241 cctgcggaga gtaagctgag gcctgagctt tctcggaaag tcttcccagc ctacttctgt
      301 aattgggcga tatgcatcca gacctcggac ccttatggaa actgctgtat gttcttgtga
      361 ttctgtgttc ttctgtgagc tcagacttgg caccttattt tatttctgag ccactctctg
      421 ctgtccagaa gcttggcaga cccgtggtcc tacattgttc tgctaaacct gttactgccc
      481 gaatctcatg gttgcataat ggaaaacgat tggacagaaa cacagaacag ataaagatcc
      541 accgggggac tttgaccatt ctgtctctca acccttccct ttctggttgc taccagtgtg
      601 tggccaacaa cagtgttggg gctgttgtca gtggccctgc cacagtgtcc gctgcagccc
      661 tggctgattt cgattcatca acaatgcatg ttattactgc agaagagaaa aacacgggtt
      721 tcattggctg cagggtacct gagagtaacc ccaaagctga ggtgcgctac aagatccggg
      781 gaaagtggct gatgtattcc acagggaact acataatcct tccctcagga aatcttcaga
      841 ttttgaatgt atcctcgaag gataagggat cctacaagtg tgctgcctat aatcctgtca
      901 ccagtgaact gaaagttgaa cccgctggcc ggaagctcct tgtgagtcgt ccttcctcgg
      961 atggttttca cattcttcac cctgctcttt ctcaggcatt agctgtcctt ccgcacagcc
     1021 ctgttacctt ggagtgtgta gtgagtgggg tccccgcctc acaagtgtat tggctgaagg
     1081 acgggcagga tgctctgtca ggaagcaact ggagaaggct gtactctcac ctggccacag
     1141 ctagcatcga cccagcggat tccgggaact attcctgtgt ggtgggcaac aacaggtccg
     1201 gagatgttaa acacgtcact tacacagtca acgtactgga gcacgcttca atttctaaag
     1261 ggctgcacga tcagaaggtg tccctggggg ccaccgtacg ttttacctgc gaagttcacg
     1321 ggaacccagc ccccaaccgc acctggtttc ataacgcaca gcccatccgc ccctcctcac
     1381 ggcatctgac ggaaggaagt gttctgaaga tcaccggggt catcatggag gattctgggt
     1441 tgtatcagtg catggcagac aatgggattg gatttatgca atctactgga agacttcaaa
     1501 ttgaacaagt tccttttgaa acaaacacaa aggcagagcc agtcacaccc tccgaagctt
     1561 ctcagaacga tgaacgagac ccacgagacg gttcagagtc cggcttgctg aacttgtttc
     1621 cagtgaaggt gcattccggt ggagtggaat tgccagcaga gaaaaatgcc tctgtccccg
     1681 atgctcctaa catactgagc cccccacaga cccacatgcc agacacatac accctggtgt
     1741 ggagggcggg gagggatggc ggaatgccca tcaacgccta tttcgtgaag taccgaaagc
     1801 tggacgacgg cagtggtgcg gtaggcagct ggcacacggt tcgcgtccca gggagtgaga
     1861 gcgagctgca tctaaccgaa ctggagcctt caagccttta tgaagttttg atggtggcca
     1921 gaagtgcagt cggcgaagga cagcctgcca tgcttacctt ccggaccagc aaagaaaaga
     1981 tggcatcatc aaaaaacacc caggcgtcct ttccacctgt gggcatccct aagcggcctg
     2041 taacttcgga ggcttccaac agcaattttg gagttgtgct tacggattcc tctaggcata
     2101 gtggagtccc agaggcacca gatcgaccta ctatctcgat ggcatcggag acctcagtct
     2161 atgtcacctg gattccccgt gcaaatggcg gctctcccat cactgccttc aaggtggaat
     2221 ataagcggat gaaaagtagt gactggctgg tggctgctga agacatccct ccttccaaac
     2281 tctctgtgga agtccggagt ttagagccag gttcgatata caaatttagg gtcattgcta
     2341 tcaaccatta cggtgagagt tttcggagct cggcgtcccg tccctaccag gtggctggct
     2401 tcccaaatcg cttttccaat cgccccataa ctggacctca catcgcatac acagaggctg
     2461 tcagcgatac tcagatcatg ctaaaatgga cgtatattcc atcaagtaac aataacactc
     2521 ccattcaagg attctatatc tattaccggc caacagacag tgacaatgac agtgattaca
     2581 agagggatgt tgtggaaggt tcaaagcagt ggcacaccat tggtcacctg cagccagaga
     2641 cctcctatga cattaagatg cagtgcttta atgaaggagg agagagtgag ttcagcaacg
     2701 tgatgatctg cgagactaaa gtgaaacgag ttcccggagc atcggagtat cccatgaaag
     2761 agttgagcac tcctcccagt tcttcaggga acggagggaa cgtggggcct gcaaccagcc
     2821 ctgccaggag cagcgacatg ctgtacctca tcgtcggctg tgtgcttggg gttatggtcc
     2881 tcattcttct ggtcttcatt gcactgtgtc tgtggaagag tcgccaacag agcgccatac
     2941 agaaatatga tcctccagga tatctctacc aggggtcaga gattaatggg cagatggtag
     3001 agtataccac tctctcagga acagcccgga tcaatgggag tgttcacgga ggcttcctca
     3061 gcaaaggcag tctcagcaat ggctgctctc acctccacca caaaggcccc aacggagtca
     3121 atgggatcct gaatggaacc ataaatgggg ggctttattc tgcacacacc agctccctaa
     3181 ccaggacgtg tgtggagttc gaacatcctc accatctagt gaacggtgga gcagtgtaca
     3241 cggctgtccc tcagatggac ccactggaat gcattaattg tcggaattgc cggaacaaca
     3301 ataggtgttt caccaaaacc aacagtcccc ttcctgtggt cccagtggta gcctcttatc
     3361 ctcaggatgg actggaaatg aagcccctcg gtgtcatgaa gttcccagtg tgtccagttt
     3421 ccacagttcc tgatggtggc cagatacctg aggagtgcct caaggacagc gtggcaccag
     3481 cacctaccca gcgtacatgc cgccaggaca acacaagcga catcaattct gattccacag
     3541 aagacacagc agagttcaac agaggagaca gcagcggtca ttcagaagca gaggacaaag
     3601 ttttcagttg gagtcctctt attttatcac ctgtcttgga ggactgcagt gagaagacag
     3661 cgtggtctcc tcctggcccc cctctagacg ggctgtcagt ggtccttcag caagcccaag
     3721 agacctgaga ggaatgtgag caggcctccc actgcaagcc agtaactgca ccacacaggc
     3781 ctggggacaa actgtgtgaa ggacattaat tcaaatcaga gaaaaccatt atttattttt
     3841 tggtagtagt aatgtcatga atgtatctta aaatgtgcgc ccttttatat tatttatgcc
     3901 ttatgttttc ccttccccat ttcttcctcc ccctattttt ttttaatgca gagttttttt
     3961 aatcgtctgg agagcagggg atcattctgt gtcttctggg gccttcagtt ggcaggcttc
     4021 catcttctgg cctgttcagt tgtggggaga ggattgccca cgccatttca catttgtcac
     4081 cagtcgttcc tagatggaaa aactgttacc tctcccatgt cgtcagactt ttgggaacat
     4141 ttaaaaatca accatagttg tgatcatatg tttataatag ccaacccagc tgacacactt
     4201 ttgagtacct tccagaaaaa tactaatact gacttatttt ctctctgtgc ctgggtacaa
     4261 gtagcgatca atcttctagg tatcaaatta gccagtgttg ttatgaacac agaaacatgt
     4321 aaagtctgtt tggattattg tattatatag aaagggaacc agattcagaa ggaaaagtaa
     4381 tgccttcatg gtccactgct cctattatct taatttacaa aatggccacc acgagttctt
     4441 cgcactactt gcagaggtat ataataaata caaaagtaag gcctttaaac tgatagtttg
     4501 aagagaagga tattacatgc ctcaagaaag aggagggctg aagggacctc taagtgaagc
     4561 tcttccctct gtcccatact gcttgtggtg tttacactac ctgaaggctg acatttttgt
     4621 cacttccagt gttgacagta tcctggggga tctgagtgag catgtgtgac tcagccttct
     4681 gccactagag cagaattcct gaggtgattg tcttataaca cagggttatc ttgactccca
     4741 gttttagaag ttctagtttg tggctgaata gacctgtagc tttggacctg tgttgaggaa
     4801 gcatatcatg gtgggcatgc atagcaaagc gaaatagctt aaaccgtaaa tcgggggggg
     4861 ggggggagcg gagtgttcaa ggctccactg agagcacgcc tcaatggtct gacaacctca
     4921 cactcctccc tcttcaagaa tctgccacct ccgaaacatg ctgccgtggg aatcagactt
     4981 cggacacaca gataggcttt ggaagatagt atccaaactg cagcagaatg tcagggaagg
     5041 cttagctgtg agagagggtt taagggcatt tttctgacag tctttctggc cgccatcact
     5101 atgagcagta accctggctt cagtcagcgg ggttcacgca gtcagttact gttctctgag
     5161 caacaagaac attgcagctg tctttggaag gcttacatgc atttcaacag cttgaaccaa
     5221 gccctagtgg atcacagatc tgcttttgaa tggtgtatcc cttagtgggg cagggggaag
     5281 ggaaccaaca ttatttctct ttatgcggaa tcaaacaatt ccaggatacg ttttgttttc
     5341 gtttcccgca aagcgaaaga gaatacggta ctgtactgat caactctata tacatgcgtc
     5401 agtattccct tacatatgcc tgtgtctttt ataaatagaa ctgctagtgg gagtgtgagc
     5461 tgtttcagca gagccactgc gctagagttc cttctgtaaa attgcagtaa atagaattcc
     5521 atagatgggt agcggggtgc tatagaagca agttctatga tcctggggtt catggccata
     5581 gtgtaaaaca tccgcaatta gttttggagg tgcttagctg tagccttaca tcttgacttg
     5641 ccaaggatgg cgtagagacc tactgtgcgc tttgccagtt gagtcggaac taagccgtct
     5701 cggagcaggg cgtttaggaa agcaggaagc aaatgtccgt gggcaatcag ttgttcactg
     5761 agactcatga aacaggtagg tcggcacgag ccttgggtca gaactgcttt taaagattga
     5821 gtttgacgtg gggcttgccc atgaggatga taaaattccc ttacctttag ggcaatctca
     5881 ttgtggactg ctttatttat gattagtaac gctgttttaa gtgttaaccc ttttattgta
     5941 ttttatttat aaaaaatggc tttatatatt gagatatata aaatataaat ataaatctat
     6001 ataattgcct ttatatttag gagtttgagt tctccttagt gtgagtttct gtgaactttc
     6061 atgttctgca cagtcaccag aaatggttgt agcaagtgtc acttccccgg gaatcaagag
     6121 gacataggaa aaatgtgtgt gggtgggtgt gggggggtca ccagtcattc ctacgtggaa
     6181 tggcatgcac ttgtggaggg acaattgttt attgagttcc ctgtttatta ctgttatctc
     6241 atctgacccc cacagcaaat agacagagta ggcatgaagt tctcagccca tgagtgagct
     6301 agagcccgca ctggagccca gttcacctgt cccgtcaccc atgccccatt tacctgcttt
     6361 ctggaagtgt tatggttcac cctccatgga accagtccag aacgtgtgca ttgtccaccc
     6421 ctgctgcgaa ctttctctgt gaggctccaa ctgcagctgg tggggcttcc ctctgtccac
     6481 cctcatccca aactgacagg gctcttacca agtacatcat cttcaggaat ctctctttga
     6541 taccctcccc ttaccctcac ccaactccta ccctctccta accctgtgaa catttaacct
     6601 tcaactggct cactggccat gaacctggta ggggcctctt catgtattgg gtgagtcttc
     6661 ctttagcgtt aaacttccct aggcctagta aattgtgtca cctttccctg gttgtgttca
     6721 ccaattacgt agccgactct ggtgacaggt gctatacagg gtataggtta attgcgtcac
     6781 tctaaaccgt tgaggtgatc tcactgttga acggttttta ctgggttctc tttgtacagt
     6841 tgttattcca ggctgatgac gtcacttctc tgtgtcagcc ccagcactac caggaaactg
     6901 tgtggaactg tcctttacct gtattgctcg ctctgaccgt gttgaccctg agatgcatgt
     6961 tttgtactat attgaaaaaa aatgtttatt ttccttaaag ttgtgctatt atgtgtgaaa
     7021 ttgtacatac tctaagtgat gtagttttga ccggttttat ttggttgaca tgattttata
     7081 ttaaaagaga atgctgcttt ca
//
