LOCUS       XM_039113065            3851 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus cyclin-dependent kinase-like 4
            (Cdkl4), transcript variant X4, mRNA.
ACCESSION   XM_039113065
VERSION     XM_039113065.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039113065.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3851
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3851
                     /gene="Cdkl4"
                     /note="cyclin-dependent kinase-like 4; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 12 ESTs, 11 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     15 samples with support for all annotated introns"
                     /db_xref="GeneID:503009"
                     /db_xref="RGD:1583704"
     CDS             1024..2052
                     /gene="Cdkl4"
                     /codon_start=1
                     /product="cyclin-dependent kinase-like 4 isoform X1"
                     /protein_id="XP_038968993.1"
                     /db_xref="GeneID:503009"
                     /db_xref="RGD:1583704"
                     /translation="MEKYEKLAKIGEGSYGVVFKCRNKSSGQVVAIKKFVESEDDPVV
                     RKIALREIRMLKQLKHPNLVNLIEVFRRKRKMHLVFEYCDHTLLNELERNPNGVSDGV
                     IKSVLWQTLQALNFCHKHNCIHRDVKPENILIAKQGVIKICDFGFARILIPGDAYTDY
                     VATRWYRAPELLVGDTKYGSSVDIWAVGCVFAELLTGQPLWPGKSDVDQLYLIIRTLG
                     KLIPRHQSIFKSNQFFRGISIPEPEDMETLEEKFSNVQPMALSFMKGCLKMDPDERLT
                     CAQLLDSTYFESFQEDQMKRKARSEGRSRRRQQNQLLPLIPGSHISPTPDGRKQAVQL
                     KFDHLPNI"
ORIGIN      
        1 tttaaaaaaa agacgagttt gaatccctag aatccaggtg aggctgggct ccatcatctg
       61 ttaccccagt gctcttgggg caagatggag agatgagaat ctcccaaaag tcacaggcca
      121 gctaccctgt catacacaaa agaggacaaa gaccctgtct caaggtgaga gcgtgtaaca
      181 cacacacaca cacacacaca cacacacaca cacacacaca cacacgtcca gtaaagatag
      241 aaacaggcca acatgtctgt ccacctgatg agaagtgttt tctagcataa aggcagaaat
      301 catataaaaa tgggtaggtg tgagtttagt tgaatttagt ggaatcgtgg tctggtcttg
      361 aaccagtgag gtaaatgtgc ttccaggttt aatttcgttt aagatgtgat ccctgagtat
      421 atcactgagg gaatggggag gtaaggtaga aggggaaagg agaggcctgt taagggaagt
      481 tcagacgacc tatggataaa tgacaaagag aaccatatgg taggtgtttg tgtgtgtgtg
      541 ccttggagtt ctgtttattc tgtgagtaaa attctaaaat tcctgaggtt aacatgtttc
      601 tctcaatgcc acattcaatg acatctgcct tgctttcttc cccactgggt gacaaacccg
      661 ccctactctg aatccaccct gggtctcctg agcagagtcg ctgagttatg aaaatggcgt
      721 taatgagcca cggctgactc caaacagcac taggaataag gtaagagcta agggtgatgg
      781 atgaaaggct gccctggcac ggaaagaacc aagcgagttg tgtggaagct gtgcagcttg
      841 cgcgtcctgg ttgccccggc aacaccgcag cggctcagtc tctggggatt tctagggttg
      901 cagccactgg gaccccctga ggctatacag tgcgtcacct tcgccagagg ctgtgctgta
      961 agtgcaggtg ccgcgccgta cgtcaagtcc atcggctcac taaattaagt ctctctaact
     1021 acaatggaaa agtacgaaaa gctggctaag attggagaag ggtcttatgg ggtcgtattc
     1081 aagtgcagaa acaaatcttc cggacaagta gtagctatca aaaaattcgt ggaatccgaa
     1141 gatgatcccg tcgttagaaa aatagccctg cgagagatcc gcatgctgaa gcagctgaaa
     1201 cacccaaacc ttgtgaacct catcgaggtg ttcagaagaa agagaaagat gcatttagtt
     1261 ttcgagtact gtgatcacac gctgttaaat gagctggaga gaaacccaaa cggagtttct
     1321 gatggagtta tcaaaagtgt gctgtggcaa acccttcaag cccttaactt ctgccacaaa
     1381 cataattgta tccatcggga cgtaaaaccc gaaaacatcc taatagccaa gcaaggagtg
     1441 ataaagattt gtgacttcgg atttgcacga attctaattc caggagatgc ctacacagac
     1501 tatgttgcca ccaggtggta ccgagcccct gaacttcttg tgggagacac gaagtacggc
     1561 tcctctgtgg acatatgggc tgtcggctgt gtttttgcag agctcctgac cggtcagcca
     1621 ctctggccag gaaaatcaga tgtggaccaa ctttatctga tcatcaggac attgggaaag
     1681 ctgatcccaa ggcatcagtc tatctttaaa agtaaccagt ttttccgtgg catcagcata
     1741 cccgaacctg aggacatgga gactcttgaa gaaaaattct caaatgttca gcctatggct
     1801 ttaagtttca tgaaggggtg tctgaagatg gatcctgatg agaggctgac ctgtgcccag
     1861 ctgttggaca gtacctactt cgagtctttt caagaggacc aaatgaaaag aaaagcccgc
     1921 agtgagggga gaagccgaag gcgtcagcag aatcaactgc tgcccctcat acctggaagc
     1981 cacatctccc ccacacctga tgggagaaaa caagccgtcc agttaaaatt tgatcatctt
     2041 ccaaacattt agggaacctg tccttcccag cgtattcttt tgatgtgtat acacatgtac
     2101 aagataggaa tcttccgcat ctcgaatgca aacgagcgat gtgaatggga aggcacctct
     2161 gatcgccaca ggctccttcc ctgtgctttt tccacaccaa ctccatctcc tagaacattc
     2221 tctttaaacg ttgcaatgcc aaaatggcac atatgagaga cacttccagt ttcaccggag
     2281 ctgggctgcc tcagggcagt tgatactgcg agtctgtgga ctacaattca acttaggaaa
     2341 cgatctctat atagcgtctc acttcagctg actatgtgac gtcctgaagc agacccagat
     2401 ctgctggctg ctgtttgtgg aggagatggc cctgtgcctg ctcaccagaa tttcttctct
     2461 gtgtagctgg gtctttcttt agcctgcatt tatgtcgctg cggcctggtg ctcatgaaag
     2521 gtggcctagg tttacctctt gacttcacgg cagatgctat tttccttctt atgaggaact
     2581 gatgagtctg cttttaaaat gagctggaga aaattccaaa catgacctgt agtggacaga
     2641 ctacaaggaa tcacccacca catcacagta atgtccctcg atccctgact gccccctcta
     2701 aggctatgct ggttcaccat ggcttctctt tcttatcttc ttaaatctat tcgtgcatat
     2761 gagaaagagg aagaggggtg aaagtcaaag gacaagatgg aggccagcct gatctacata
     2821 gcaaagcctt gtctcaacac ccaccctcta aggttgtttg aaccaaatcc ctgccgctga
     2881 ctgtataaga taggaataat tcctacatgt gtagatgcca tttttcattt gttgaaatat
     2941 ctaaagatct tgctagaagt agaagtgtgc taaatgctct tgacatagta ggtgtcttag
     3001 gatttcactt ctgaccgcat caccgttaga ttaaaaaaaa aaaaatcaaa ggggttgggg
     3061 atttagctca gtggtagagc gcttgcctag caagcgcaag gccctgggtt cggtcccagc
     3121 tccgaaaaaa agaaaagaaa aaaaaaatca aagaatgggt atgtattact ctacatctta
     3181 gaatcatacc tgttttagct acactgaacc ttgtgaaagg ctggggccat agctgaacct
     3241 gtgcagttct tgtctatgtg caggaaaccc ttgggttttg tctcccagtg tggaataaaa
     3301 cagctgtagt cacacctgcc tgaaattaga aattcaaagt cactgtcctt ggctacataa
     3361 aaagctcaag accatgctgg gctaaagtct tccaggcatg acgatccgtg tttgtatcaa
     3421 ggggcaggaa gggagattcc aaggtcaggg ctagccaagg ccaagtgtgt gaggcttctc
     3481 cagcaaaaca aaagcaaacg aataggagtt gttgacagta gtcactggcc atttctctaa
     3541 atatcatccc gctgaagaag atgcttagtt cattttataa tgcattaatg cagaagctgg
     3601 gtgatttcag atcacttgaa attgtagctc ttgtcaatta gcatttaata attaacataa
     3661 tgatagtcta aactattaga gcttactata aagtagtttt gcttgaatta tatgaaacat
     3721 ataatgttat ggatttaaaa ttttaactta agatgtttag gaaagctaag gattaaacac
     3781 tttagtgact gtatatgtgt gtatatacct tgactgttct ttaatttatt ttaataaaag
     3841 ccagaaacgt t
//
