LOCUS       NM_001008360            2607 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Rattus norvegicus cell death-inducing p53 target 1 (Cdip1), mRNA.
ACCESSION   NM_001008360 XM_340754
VERSION     NM_001008360.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2607)
  AUTHORS   Qin,W., Wunderley,L., Barrett,A.L., High,S. and Woodman,P.G.
  TITLE     The Charcot Marie Tooth disease protein LITAF is a zinc-binding
            monotopic membrane protein
  JOURNAL   Biochem J 473 (21), 3965-3978 (2016)
   PUBMED   27582497
REFERENCE   2  (bases 1 to 2607)
  AUTHORS   Brown,L., Ongusaha,P.P., Kim,H.G., Nuti,S., Mandinova,A., Lee,J.W.,
            Khosravi-Far,R., Aaronson,S.A. and Lee,S.W.
  TITLE     CDIP, a novel pro-apoptotic gene, regulates TNFalpha-mediated
            apoptosis in a p53-dependent manner
  JOURNAL   EMBO J 26 (14), 3410-3422 (2007)
   PUBMED   17599062
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC085860.1.
            
            On Dec 16, 2004 this sequence version replaced XM_340754.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC085860.1, SRR8487227.270691.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2607
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q12"
     gene            1..2607
                     /gene="Cdip1"
                     /gene_synonym="RGD1310686"
                     /note="cell death-inducing p53 target 1"
                     /db_xref="GeneID:360480"
                     /db_xref="RGD:1310686"
     exon            1..97
                     /gene="Cdip1"
                     /gene_synonym="RGD1310686"
                     /inference="alignment:Splign:2.1.0"
     exon            98..171
                     /gene="Cdip1"
                     /gene_synonym="RGD1310686"
                     /inference="alignment:Splign:2.1.0"
     exon            172..238
                     /gene="Cdip1"
                     /gene_synonym="RGD1310686"
                     /inference="alignment:Splign:2.1.0"
     exon            239..346
                     /gene="Cdip1"
                     /gene_synonym="RGD1310686"
                     /inference="alignment:Splign:2.1.0"
     CDS             262..888
                     /gene="Cdip1"
                     /gene_synonym="RGD1310686"
                     /note="LITAF-like protein"
                     /codon_start=1
                     /product="cell death-inducing p53-target protein 1"
                     /protein_id="NP_001008361.1"
                     /db_xref="GeneID:360480"
                     /db_xref="RGD:1310686"
                     /translation="MSNEPPPPYPGGPTAPLLEEKSGAPHTPGRTSPAVMQPPPGMPL
                     PSADIAPPPYEPPGHPVPQPGFVPPHMNADGTYMPAGFYPPPGPHPPMGYYPPGPYPP
                     GSYPGPGGHTATVLVPSGAATTVTVLQGEIFEGAPVQTVCPHCQQAITTKISYEIGLM
                     NFVLGFFCCFMGCDLGCCLIPCLINDFKDVTHTCPSCKAYICTYKRLC"
     exon            347..502
                     /gene="Cdip1"
                     /gene_synonym="RGD1310686"
                     /inference="alignment:Splign:2.1.0"
     exon            503..776
                     /gene="Cdip1"
                     /gene_synonym="RGD1310686"
                     /inference="alignment:Splign:2.1.0"
     exon            777..2580
                     /gene="Cdip1"
                     /gene_synonym="RGD1310686"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gagtgctgcg agccctctgg tagaggggct cgtctgagca ccgggctgga ccctttcaga
       61 tttctgaccc cctggcctca ggctcctgga ttccgagccc tgctttcata ggaaaaacca
      121 gtgcgaggca gtgagacttc agccttttgt tcatggcacc atgagatcca gcctcctaga
      181 tctgtctcgg ctgaattact ctcacccgtt tccattctgt gtgcaccaga aatctgagat
      241 ccaggagtat caacagcaaa gatgtctaat gagccacccc ctccttatcc aggaggtcct
      301 acagccccac tactggagga aaaaagtgga gccccacata ccccaggccg aacctctcca
      361 gctgtgatgc agccaccacc aggcatgcca ctgccctctg ctgacattgc ccccccgccc
      421 tatgagccgc ctggccatcc agtgcctcag cctggtttcg tgccccccca catgaatgca
      481 gatggcacct acatgcctgc aggtttctac cctcctccag gccctcaccc acctatgggc
      541 tattatccac caggacccta cccaccaggg tcctaccctg gccccggggg ccacacggcc
      601 acagtattgg tcccatcagg ggcagccacc acggtgacag tactgcaggg agagatcttt
      661 gaaggcgccc cagtgcagac agtgtgtcct cactgccagc aggccattac caccaagatc
      721 tcctacgaga taggcctgat gaactttgtg ctgggtttct tctgctgctt catggggtgt
      781 gacctgggct gctgcttgat cccctgcctc atcaatgact tcaaggatgt gacgcacaca
      841 tgtcccagct gcaaagccta catctgcaca tacaagcgct tgtgctaaca gagccagact
      901 tggactcccc cgcctatcag tctggcccca tgtgctttgc tccccatgct cagtggttat
      961 tactccccaa accccactta cggttggaag ttttgccact gtaccctgga aatcctgtcc
     1021 tcaccttgcc cttccctgag catccgactc ttccagcaaa attctgttgg attgaaggcc
     1081 aagggccagt gggtggcatg ggggtggcac tgatcctgtg tgttgcttgg acatttgcaa
     1141 ttcagaagat aagctagagt ggctctctta ctggggtcct catttctcct ttctgtgtaa
     1201 atagacggtt caggctggtc cttattcttc ctgggaccaa aagcacccag aggcatcaac
     1261 aggcccccca gactagggcc tacagtgagg atcgtgcctg gaaccacagt tcctgacctg
     1321 ctggaatgaa gtcagggttt tatctaaagt taagtggacc caagcaagac agggtcttat
     1381 ggtttaagtg gggtttgttg tctcgggtac caagataggg aaagaaatga agactgctaa
     1441 ccctggacct cagaactctc aggtatggag acacccaaga gctgcctggt ataaggcaga
     1501 gaggatgctg ggctatttaa agctctggta acgaagaaga acttgcccct gtcctcacct
     1561 agcttctttg agtcagtcag tatgcagatc tcctttctgg ccacacctct gtgagcccct
     1621 ctattttctg gggccggaag gaatgaatgc ccatgagcct gtcctgtcta cttctgtctc
     1681 tgtgctatgt aggtgcaact tctgcctggt ggtttgctga catggcaggt cagaagcacc
     1741 tccttgtaag ttcattggtc tctggagtaa gtgccagcct ttttgccata gttgacttgc
     1801 ttccatattg gagctcctca ataggaacga acagctgtgg caccggggac caggaaagaa
     1861 gtcacaagtg gtgggagtat cctagggaca tgagtcgtgc cctgggtgta agcccaaacc
     1921 tgtccatttc ttgaatggtc tgtgaatatg cccatgtgga cgctgtaacc tgctgctgtc
     1981 cctctcctgg tctcacacac tgcatggcct cctatcactg tgaactgtgg cctggtccca
     2041 gtttgtagtt tcattaaatt ggccctttca ctcccctgcc ctgggcctct gctgtcttgc
     2101 ctggcttcct tcttttctga gagacagggt gggactacag gtagtcagtc tagtggcagg
     2161 caggagcctg ggcctgggaa acaacacatt caagaaccca attacaccaa accagaatta
     2221 tatatagacc tgccctgggg gaaccgagct gttctgggcc agggcattgg tttctaccgt
     2281 tgcataatta gatgtccagg cttctgagcc tgcaaattgg agccctgtcc tagcttagtg
     2341 acctcctaac ctatagctat tgctcttttg tccttaaaga atacagcact actggactaa
     2401 gaccttatat ctgaagatga cacactgaag tctcggcact cagttcttgg taaaatcaat
     2461 cttctgaact gtgaaagtgg tgagctcaag tctttttgag tttccctgct gttctaccat
     2521 ttttttcaca caaagacttt tataggaata gattcctact aataaagaca tttaacttca
     2581 aaaaaaaaaa aaaaaaaaaa aaaaaaa
//
