LOCUS       XM_039082828            2748 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus cadherin-related family member 4
            (Cdhr4), transcript variant X1, mRNA.
ACCESSION   XM_039082828
VERSION     XM_039082828.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039082828.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2748
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2748
                     /gene="Cdhr4"
                     /note="cadherin-related family member 4; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 ESTs, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 14 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:363144"
                     /db_xref="RGD:1306603"
     CDS             111..2573
                     /gene="Cdhr4"
                     /codon_start=1
                     /product="cadherin-related family member 4 isoform X1"
                     /protein_id="XP_038938756.1"
                     /db_xref="GeneID:363144"
                     /db_xref="RGD:1306603"
                     /translation="MMMLRLLEFLFALLIPVFPSLPWSTDILESKGPGTVLQTFLFNC
                     SSYMPTLELLSVKPPTSFFNKPSLQGQKGLYRGKVTLSSSARLDALAVNYYELQLRYT
                     CGNFVVDGSFFVHVLRDPGRIHCTGAFASPAGEFIYVPETVTPGALLYTLLLPGLGGQ
                     RAQMNITSAQDPPVFPGPFSIDEHGLLRAPSQGLRGQAQKTFQLQILVSLGKSQRCKG
                     MLTVKVLPAPPSHVSFLKKAQSITIAEDLVPGSEVVQVQARGLNLLYEIISPRPSPLY
                     SIGQADGVVRTTAPLDLVRVQGAVVTKLQVKAFERLRPWASAVSDLTVIVRAVNQRPP
                     RCHPALLVTQIPETALEGTVLDTLTCVDPDSAGAPLDYQLRFHSPPDSASLRLRGRTL
                     EVNATLDCDAPGACFQHLASILVSDGGQPQMTGQVWVPQVISLTAKWSPAEVPVLVMV
                     TPVNEFSPSCMPHTFRVREDAGPYTLLGSIVGTDVDHPRNSLEYHISGGLSTFAVDRL
                     SGELHLLGPLDYEQQRLYRIVILLIDHSQDWDLNSHRSGSCTITIEVEDVNDHAPECE
                     PPFQELTIYTALGRSMEVTKVSCWIPQEPQRLTLSYSIMGGNSQSRFRLQGTILVYND
                     TVLGPPWPEPPSTHELLIHVADMGPSTPHLSTTATIIVHLVPWKASTVATSTHQSTVS
                     STMTPLIVTDVEAFWKPEPWFVVVLTATGAVLLLALGWLLGRILRRLAQSLQAPSKPA
                     RAQLLNSIQGSRGSIERQMEAPSMEMSKQHFDGRAQDVCNFSEAPVVPDDDPDLVLSQ
                     LFGEGKGDGGKGRAPLIFQLHQ"
ORIGIN      
        1 gctggagtct gggaagccac ctgattgctg tgtttaagca actaaccagg caacagagtt
       61 agcctgagtt agcctgagaa accgcttcct ccaccattct tcaggctacc atgatgatgc
      121 tcaggctcct ggagtttctt tttgctttac ttatccctgt cttccccagc ctgccctggt
      181 ccacagatat ccttgagagc aaaggccctg gtaccgtcct tcagactttc ctcttcaact
      241 gttcctccta catgcctacc ctggagttac tcagtgtgaa accacccacc agcttcttca
      301 acaaacccag cctgcagggg caaaagggac tctaccgggg gaaggtgacc ttaagtagct
      361 ccgctcggct ggatgccctt gcagtaaact actatgagct gcaactgcgg tacacatgcg
      421 gtaactttgt ggtagacgga tcattctttg ttcatgtgct gcgggaccct gggcgtatcc
      481 attgtactgg tgcatttgcc agcccagctg gggaattcat ttacgtgcca gagacagtca
      541 cacctggggc cctgctgtac actctgttgc tgcctggcct aggaggccag agagcccaga
      601 tgaacatcac cagtgcccaa gaccctccag tcttccccgg gcctttctcc atcgatgagc
      661 atgggctgct gcgggcacca tcccagggcc tcagaggcca ggctcaaaag accttccagc
      721 tgcagatttt agtgtcctta ggaaaaagcc aacgctgcaa agggatgctg acagtgaagg
      781 ttttgcctgc accccccagc catgtctcct tcctaaagaa ggcccagagt atcaccatcg
      841 cagaggatct ggttcccggg agcgaggtgg ttcaggtcca agctagggga ctcaacttac
      901 tgtatgaaat catctcccca cggcccagtc cactctactc gattggacaa gctgatgggg
      961 tagtgcggac caccgcaccc ctggatttgg ttcgtgttca gggcgcggtg gtcacaaaac
     1021 tgcaggtgaa ggcctttgag aggctccggc cttgggccag tgccgtgtcc gatctcacgg
     1081 ttatcgtgcg cgcggtaaac cagaggcccc cacgctgcca tccagcgcta ctggtgactc
     1141 aaattccaga gactgccctt gagggcactg tgctagacac gctcacgtgt gttgacccag
     1201 actctgcagg cgcccccctc gactaccagc tgcggttcca cagccctccc gactctgcca
     1261 gcctccgtct tcgtggcaga acccttgagg tgaacgctac actggactgt gacgctcctg
     1321 gggcttgctt ccagcattta gcttccatcc tggtgtccga tggcggtcaa ccccagatga
     1381 ccgggcaggt ctgggtacct caggtcatct ccttaactgc caagtggtcc ccagctgagg
     1441 ttccagtgct ggtgatggtg acacccgtca atgagttctc cccatcctgt atgccacaca
     1501 cgttccgggt tcgggaggat gcagggccct acactctgct gggctccata gtgggcacgg
     1561 atgtggatca ccctcgtaac agcctcgagt accacatctc tggaggactc tccacctttg
     1621 ctgtggatcg cctgagtgga gaacttcacc tcctggggcc tttggactat gagcagcaga
     1681 ggctgtacag gatcgttatt ctgctgattg atcacagtca agactgggac ctcaacagtc
     1741 accgatcagg ttcatgtacc ataaccattg aggttgagga tgtgaacgat catgccccag
     1801 agtgtgagcc tccatttcag gaactcacca tctacactgc cctgggtcgt agtatggaag
     1861 tgactaaggt gtcatgttgg atcccacaag agccacagcg cttgaccctc tcctacagca
     1921 tcatgggagg gaatagccag agccgattta gactccaagg gaccatcctg gtgtacaatg
     1981 acactgtgtt ggggcccccg tggccagagc cgccctccac tcatgagcta ttgatccatg
     2041 ttgctgatat gggcccttcc accccacacc ttagcaccac agccaccatc attgtgcatc
     2101 tagttccttg gaaggccagc acagtggcca ccagcaccca ccaaagcaca gtgtcctcaa
     2161 caatgacacc cctcattgtg acagacgtag aggctttctg gaagccagag ccctggtttg
     2221 tggtagtgct gacagcaact ggtgcagttc tcctcctggc tctgggttgg ctcctcggca
     2281 ggatccttcg gaggttggcc cagtcactac aggcaccgag caaaccagcc agagctcagt
     2341 tgttaaacag catccaggga agtagaggct ccattgagag gcaaatggag gcaccaagca
     2401 tggagatgtc caagcaacat tttgatggca gagcccaaga tgtctgcaac ttttctgaag
     2461 caccagttgt gccagatgac gacccagacc tagtcctgtc ccagctcttc ggggagggga
     2521 agggagatgg tggtaagggg agagctcccc tcatattcca gctccaccag taaattgtag
     2581 ctgactaatc tgactctggc tgctgtagag gatctggtat cccctcgctt actgttcctt
     2641 tgagtcaaac ctctgggctc tctgctgaga aggcaaagag gagatcagtt tgggtccctg
     2701 tggaaggggt gactacactg ctgaagctag ccatcctttc ttccttcc
//
