LOCUS       XM_006243872            2546 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus cadherin-related family member 4
            (Cdhr4), transcript variant X20, mRNA.
ACCESSION   XM_006243872
VERSION     XM_006243872.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006243872.4.
            
            On Jan 21, 2021 this sequence version replaced XM_006243872.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2546
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2546
                     /gene="Cdhr4"
                     /note="cadherin-related family member 4; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 6 ESTs, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 40 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:363144"
                     /db_xref="RGD:1306603"
     CDS             111..2450
                     /gene="Cdhr4"
                     /codon_start=1
                     /product="cadherin-related family member 4 isoform X14"
                     /protein_id="XP_006243934.1"
                     /db_xref="GeneID:363144"
                     /db_xref="RGD:1306603"
                     /translation="MMMLRLLEFLFALLIPVFPSLPWSTDILESKGPGTVLQTFLFNC
                     SSYMPTLELLSVKPPTSFFNKPSLQGQKGLYRGKVTLSSSARLDALAVNYYELQLRYT
                     CGNFVVDGSFFVHVLRDPGRIHCTGAFASPAGEFIYVPETVTPGALLYTLLLPGLGGQ
                     RAQMNITSAQDPPVFPGPFSIDEHGLLRAPSQGLRGQAQKTFQLQILVSLGKSQRCKG
                     MLTVKVLPAPPSHVSFLKKAQSITIAEDLVPGSEVVQVQARGLNLLYEIISPRPSPLY
                     SIGQADGVVRTTAPLDLVRVQGAVVTKLQVKAFERLRPWASAVSDLTVIVRAVNQRPP
                     RCHPALLVTQIPETALEGTVLDTLTCVDPDSAGAPLDYQLRFHSPPDSASLRLRGRTL
                     EVNATLDCDAPGACFQHLASILVSDGGQPQMTAEVPVLVMVTPVNEFSPSCMPHTFRV
                     REDAGPYTLLGSIVGTDVDHPRNSLEYHISGGLSTFAVDRLSGELHLLGPLDYEQQRL
                     YRIVILLIDHSQDWDLNSHRSGSCTITIEVEDVNDHAPECEPPFQELTIYTALGRSME
                     VTKVSCWIPQEPQRLTLSYSIMGGNSQSRFRLQGTILVYNDTVLGPPWPEPPSTHELL
                     IHVADMGPSTPHLSTTATIIVHLVPWKASTVATSTHQSTVSSTMTPLIVTDVEAFWKP
                     EPWFVVVLTATGAVLLLALGWLLGRILRRLAQSLQAPSKPARAQLLNSIQGSRGSIER
                     QMEAPSMEMSKQHFDGRAQDVCTGRDYLFSTLTGARRWL"
ORIGIN      
        1 gctggagtct gggaagccac ctgattgctg tgtttaagca actaaccagg caacagagtt
       61 agcctgagtt agcctgagaa accgcttcct ccaccattct tcaggctacc atgatgatgc
      121 tcaggctcct ggagtttctt tttgctttac ttatccctgt cttccccagc ctgccctggt
      181 ccacagatat ccttgagagc aaaggccctg gtaccgtcct tcagactttc ctcttcaact
      241 gttcctccta catgcctacc ctggagttac tcagtgtgaa accacccacc agcttcttca
      301 acaaacccag cctgcagggg caaaagggac tctaccgggg gaaggtgacc ttaagtagct
      361 ccgctcggct ggatgccctt gcagtaaact actatgagct gcaactgcgg tacacatgcg
      421 gtaactttgt ggtagacgga tcattctttg ttcatgtgct gcgggaccct gggcgtatcc
      481 attgtactgg tgcatttgcc agcccagctg gggaattcat ttacgtgcca gagacagtca
      541 cacctggggc cctgctgtac actctgttgc tgcctggcct aggaggccag agagcccaga
      601 tgaacatcac cagtgcccaa gaccctccag tcttccccgg gcctttctcc atcgatgagc
      661 atgggctgct gcgggcacca tcccagggcc tcagaggcca ggctcaaaag accttccagc
      721 tgcagatttt agtgtcctta ggaaaaagcc aacgctgcaa agggatgctg acagtgaagg
      781 ttttgcctgc accccccagc catgtctcct tcctaaagaa ggcccagagt atcaccatcg
      841 cagaggatct ggttcccggg agcgaggtgg ttcaggtcca agctagggga ctcaacttac
      901 tgtatgaaat catctcccca cggcccagtc cactctactc gattggacaa gctgatgggg
      961 tagtgcggac caccgcaccc ctggatttgg ttcgtgttca gggcgcggtg gtcacaaaac
     1021 tgcaggtgaa ggcctttgag aggctccggc cttgggccag tgccgtgtcc gatctcacgg
     1081 ttatcgtgcg cgcggtaaac cagaggcccc cacgctgcca tccagcgcta ctggtgactc
     1141 aaattccaga gactgccctt gagggcactg tgctagacac gctcacgtgt gttgacccag
     1201 actctgcagg cgcccccctc gactaccagc tgcggttcca cagccctccc gactctgcca
     1261 gcctccgtct tcgtggcaga acccttgagg tgaacgctac actggactgt gacgctcctg
     1321 gggcttgctt ccagcattta gcttccatcc tggtgtccga tggcggtcaa ccccagatga
     1381 ccgctgaggt tccagtgctg gtgatggtga cacccgtcaa tgagttctcc ccatcctgta
     1441 tgccacacac gttccgggtt cgggaggatg cagggcccta cactctgctg ggctccatag
     1501 tgggcacgga tgtggatcac cctcgtaaca gcctcgagta ccacatctct ggaggactct
     1561 ccacctttgc tgtggatcgc ctgagtggag aacttcacct cctggggcct ttggactatg
     1621 agcagcagag gctgtacagg atcgttattc tgctgattga tcacagtcaa gactgggacc
     1681 tcaacagtca ccgatcaggt tcatgtacca taaccattga ggttgaggat gtgaacgatc
     1741 atgccccaga gtgtgagcct ccatttcagg aactcaccat ctacactgcc ctgggtcgta
     1801 gtatggaagt gactaaggtg tcatgttgga tcccacaaga gccacagcgc ttgaccctct
     1861 cctacagcat catgggaggg aatagccaga gccgatttag actccaaggg accatcctgg
     1921 tgtacaatga cactgtgttg gggcccccgt ggccagagcc gccctccact catgagctat
     1981 tgatccatgt tgctgatatg ggcccttcca ccccacacct tagcaccaca gccaccatca
     2041 ttgtgcatct agttccttgg aaggccagca cagtggccac cagcacccac caaagcacag
     2101 tgtcctcaac aatgacaccc ctcattgtga cagacgtaga ggctttctgg aagccagagc
     2161 cctggtttgt ggtagtgctg acagcaactg gtgcagttct cctcctggct ctgggttggc
     2221 tcctcggcag gatccttcgg aggttggccc agtcactaca ggcaccgagc aaaccagcca
     2281 gagctcagtt gttaaacagc atccagggaa gtagaggctc cattgagagg caaatggagg
     2341 caccaagcat ggagatgtcc aagcaacatt ttgatggcag agcccaagat gtctgtacgg
     2401 ggagagatta cctgttcagc acactcacgg gagcccggcg ttggctgtga ggccaagtag
     2461 ctgctttact ctgtggggaa ttcccttttc tcatgatcat agcctggatt tccaaatcga
     2521 tttagtaata aagactacca acagaa
//
