LOCUS       XM_039113156            2972 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus cadherin-related family member 3
            (Cdhr3), transcript variant X1, mRNA.
ACCESSION   XM_039113156
VERSION     XM_039113156.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2972
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2972
                     /gene="Cdhr3"
                     /note="cadherin-related family member 3; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 ESTs, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 12 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:686932"
                     /db_xref="RGD:1591286"
     CDS             116..2617
                     /gene="Cdhr3"
                     /codon_start=1
                     /product="cadherin-related family member 3 isoform X1"
                     /protein_id="XP_038969084.1"
                     /db_xref="GeneID:686932"
                     /db_xref="RGD:1591286"
                     /translation="MQGAFIVLVLLGITSGEALHLIHLPATSHVAENAPPATLVHTFS
                     VNLSVSLSPVIPGFPMVINPRPFTEAFRVNRLSATTFEVVTTGKEQLDFETGPKAFDL
                     QIYVKDDVGVTDVQVLTVQVTDVNEPPQFQGSLAQGLNLYITERTNPGFIYQVEAFDP
                     EDTSRNIPLRYFLISPSKNFRMSANGTLFSTTELDFEAGHKSFHLLVGVRDSRDLEAS
                     TALQVTIVNINDEIPLFTSPRRVYSIPEEAPLGTMVANITAVDPDDEGFPGHLLYSIA
                     TTSSYFMVDQLTGTIQVAQRLDRDAGELRQNPIISLEVLVKDRPSGGQENRMQITFIV
                     EDINDNPATCRKRTFSIMLPERAANGTLLLDLNKFCFDDDSEAPNNKFNFTTPSGAGS
                     SRRFSQRPAGSGRIVLIGDLDYENPSNLAAGNKYSVMIQVQDVAPPYYKKSIYISILT
                     RPENEFPLIFERSSYMFDVPETRPARTQVGQVRATDRDFPQRPVVYSISRGGASLQYP
                     NIFWINPKTGELQLITKADHETTPVYILTVEATNGEDRSSVTVTVNIVGENDEKPICT
                     PNFYFMSIPVDLKVGTNIQNFKLTCTDLDSSPRSFRYSIGSGNINNHFAFSPNAGSNI
                     TRLLLASRFDYSILDTVRDYKLLVYVTDDNLLSGRTKAKALVETGTVTLSVKVIPHPV
                     TTITTPRPRITYQIRRENIFSPSAWYVPFIITLGSIVLVGLLGSLMVLLAKAVYRHCS
                     SMTRKDKKPLIKKGDTKSTKSTKREAMVESIQMNSVFDGEAVDPVTGEIYEFNSKTGA
                     RKWKGPLTQLPSWPEPSTQPRGTAGEASVPKHTGK"
ORIGIN      
        1 ggtttcctgc ctagcaacaa agtcaggagg gaaggaattg tggcatctag aatgcatatg
       61 ggctagagca ctggagaaga tcctcagtgg ccatctacac aaggagccgt ccagcatgca
      121 gggggcattc attgtccttg tgcttctagg gatcacctca ggagaagctc tacacctgat
      181 ccacctgcct gccactagcc atgtggccga gaatgctcca cctgccactt tggtgcacac
      241 attttctgtg aatttatcag tatcactgtc acctgtgatc ccaggatttc ccatggtaat
      301 caacccaagg cccttcactg aggccttcag ggtgaacaga ctgtcagcaa cgacctttga
      361 ggttgtcacc actgggaaag aacaactaga ttttgaaaca ggaccaaaag catttgattt
      421 gcagatttat gttaaggatg atgttggtgt cacagacgtg caagtcctga ctgttcaggt
      481 gacagatgtg aatgagccac ctcagttcca aggcagtttg gcacaaggtt taaacctcta
      541 tatcacagaa agaacaaacc ctggtttcat ttaccaggtg gaggcatttg acccagaaga
      601 cacaagccgg aacatacccc tcaggtactt cctcatttct ccctcgaaga acttcagaat
      661 gtctgctaat ggcaccctct tctccaccac agaactggac tttgaagcag ggcacaaaag
      721 cttccacctc cttgtgggag taagagacag tagggacctt gaagcttcca cagcacttca
      781 ggtgactatt gtgaacatca atgatgagat cccactcttt accagcccaa ggagagtgta
      841 ctccatccca gaggaagcgc ctctgggaac catggtggcg aacatcacag cagtggatcc
      901 tgatgacgag ggctttcctg gccacctcct ctacagcatc gctaccacca gcagctactt
      961 catggtagac cagttgacag ggacaatcca agtggcccag aggctagatc gagatgcagg
     1021 tgaactgaga cagaatccca tcatttctct ggaagttctg gtgaaggaca gaccctctgg
     1081 gggtcaggag aaccgcatgc agataacctt catcgtggaa gatatcaatg acaatcctgc
     1141 aacatgcaga aagcgcacct tcagcattat gttgcccgag agagcagcca acgggacatt
     1201 gcttttggac ttgaacaagt tctgctttga tgatgacagc gaagctccga acaacaaatt
     1261 caactttacc acgccatctg gagcggggag cagccgccga ttctcacagc gtccagctgg
     1321 ctctgggaga attgtgttga ttggtgatct agattatgaa aatccgagca acctcgcagc
     1381 tggcaataaa tacagtgtga tgatccaggt gcaagatgtg gctcctccat actataaaaa
     1441 aagcatctac atttctatcc taacacgccc agaaaatgaa tttcctctca tcttcgagag
     1501 gtcctcctac atgtttgacg tgccagagac aagaccagct agaacccagg ttgggcaggt
     1561 gcgagcgact gatagagact tccctcagag accagtggtg tattctatat ccagaggagg
     1621 ggccagcctc cagtacccaa acatattttg gattaatccc aagacaggag aactccaact
     1681 aattactaag gcagaccatg aaaccactcc tgtctacatc ctcacggtcg aggccaccaa
     1741 cggcgaggac aggagctcag tcactgttac tgtgaacatt gttggagaaa atgacgaaaa
     1801 gccaatatgt actccaaatt tttacttcat gtccatccca gtggacctaa aagttggtac
     1861 caacattcag aatttcaagt tgacgtgcac tgaccttgat tctagcccca gatcttttcg
     1921 atactccatt ggctcaggca acatcaacaa tcattttgcc ttctctccca atgctggctc
     1981 caacatcaca cgcctgctgc tggcatcccg ctttgactat agcatccttg atacagtcag
     2041 ggactacaaa ttgcttgtct acgtcaccga tgacaacttg ctgtctggca gaacaaaagc
     2101 caaggctctt gttgaaacag ggacagtgac tctgagtgtt aaagtcattc ctcacccggt
     2161 cacaaccatc acaactccca ggcccaggat tacctaccag atccgcaggg aaaacatatt
     2221 ctctccatct gcatggtatg tgccattcat catcactctg ggctccatag ttcttgtcgg
     2281 tcttctgggg tccctgatgg tcctgctggc caaagcagtc tacagacatt gctcctccat
     2341 gaccaggaag gacaagaaac ctctgataaa gaaaggagac acaaagagta cgaagagtac
     2401 gaagagagag gccatggtgg aatctatcca gatgaactct gtctttgatg gagaagccgt
     2461 agacccagtt accggggaaa tatatgaatt caactcaaaa actggtgcca gaaagtggaa
     2521 aggcccgtta acccagctgc ccagttggcc tgagcccagc acccagccca gaggcacagc
     2581 tggagaagcc tcagtcccta aacacacagg gaaataacag gctcacagct acccgggttc
     2641 atgatgagag agtgcctaca tttgaatgcc aagtcgcccc cttacggtct tctgttcttc
     2701 tcctccgttc ttcacagtgg catccaggca gccctttcag cccagcttcc cagctcgtat
     2761 cctctaatat gtctgtcctt gtgttcactt ataaacacag ctcaagggct ggagagatgg
     2821 ctcagtggaa agagagagca ctgattgctc ttccagaggt cctgagttca attcccagca
     2881 accacatggt ggttcacgac cgtctgtaat ggaatttgat ggcctcttgt ggtgtgtctg
     2941 agacagtgac agtgtaaata aataaataaa ta
//
