LOCUS       XM_214434               4869 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus cadherin-related family member 2
            (Cdhr2), transcript variant X1, mRNA.
ACCESSION   XM_214434
VERSION     XM_214434.10
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051352.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 31, 2024 this sequence was replaced by
            NM_001427596.1.
            
            On Jan 21, 2021 this sequence version replaced XM_214434.9.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4869
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4869
                     /gene="Cdhr2"
                     /note="cadherin-related family member 2; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 34 ESTs, 4 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:291002"
                     /db_xref="RGD:1560576"
     CDS             858..4790
                     /gene="Cdhr2"
                     /codon_start=1
                     /product="cadherin-related family member 2 isoform X1"
                     /protein_id="XP_214434.4"
                     /db_xref="GeneID:291002"
                     /db_xref="RGD:1560576"
                     /translation="MAWLWLLCVLLPTFMVSVTANSLPVFESNMTLVLLPEDLPVGAV
                     VFWLVATDPDGDQLTYGISGLHANYFSVTSNTGEVKLVSSLDFETLPSFRITISVNDG
                     HNVQVTKEMQVIVEDRNDNAPVFLNTEFSTSIKETLPVGSVVFSVLAEDKDTGSSGLV
                     EYFIEKVIPSTDNSKDLFRILVNGSIVLNDTLSYNNKSAFYQLELKACDSGGLLNNTL
                     VTQCSQPVFVSISVIDEPDLDPQFVREFYSASVSEDATLGTSVLAVEAVDSDKGVNYN
                     VTYNITNSTRPGWFCIEKDGVITVCGPLDREQLLLDNEEVQIQVTATEEKPNIYQQEA
                     KVSTWVTIKVTDVNDHKPEFYNCSLQNCTFSPQEAQDNFTGYVDEHASARISIDGLTM
                     VAYDPDQGANGTFLLSLNGTDAEAFNVSPERAAVSVSVQVVVKNSEMVDYEKKTEMQV
                     QVVATDSVSGNYSVATVTIHLRNINDHRPVFSKSLYELTVPENSPTGFLVTDSIEATD
                     LDGDEWGPITYSLLPGAGEDLFEVEPKSGNVTVKNGTLLDREKQAMYYLTMQATDGGN
                     QSTTTMLQITLLDVNDNPPVVRGSYNIFVPEEDGDVSVTIQAYDDDQPGTNNSRLLFS
                     LLPGSYSQNFSIDPDTGLLRNLEPLDREAIDPALEGRIVLTVHVADCGEPSLSTDVNV
                     TITVEDINDNLPIFNQSSYEFFVMERVPGALVGTVKAWDADQTAANNRISFSLSGTGA
                     NNFILQSIVLALGWAEGHLWLLPDVSLDYETQKLFNLTVSAENPGPQGLESTANITVV
                     VVDVNDEPPTLDAVSLQSISVAENGSEHGQVAQVIAQDVDTNALLRIELVDVLCTKAG
                     VDVGSVCHGWFSVDTNGSVYINQSEAIDYEVCHLVTLVVRAQDLATDLGFDAYSSNGS
                     LLINIKDKNDNTPYFLPNNQTFVIIPELVLPNQQVASVQARDEDSEDNGIIKFSILKA
                     DFVPKDGATNPVQVFRISQSVEAGLYTGSIELVTNLDSTLQGTYQVTVQAQDQPAMDP
                     ALETQTTLNLFTVDQSYRVRLQFSTSREDVGANMEEIKAALIQATRTSVYVVTIQNID
                     SMARARVNSYMDAYFVFSNGSALTLTELNVMIRKDQDALRQLLQLGLVVVSSQETQEF
                     NQTQLLTNVIIGLVVSLVLVLVIMITALVCFRKSYHRKLRAMKAGKEARKTPIETMTP
                     AAAIPGTNVYNTDRANPMLDLPTKDLGLECHSSSDLDYHSLNSLDENSVDLDTDSKEF
                     KRKDLPHNPPESDSEPLTAALSGRSAGTSGQQQRELSFTNPGLDTTDL"
ORIGIN      
        1 gtgtgtgaac ctgccctttg attttgattt tgattttgtt ggtttttatt tttggtttgt
       61 ttctctgcat aactctggtt gccctggaac tcgctggcct caaactctga gatctatggg
      121 catctgcttc ccaaatcccg ggatcgaagg cgccacttcc ccagctcacc tttgtttctg
      181 agagataaca tctcgctgtg tctggtctaa aacttgttct atagaccagc tggtcctgga
      241 actcataggg atccacttgc ctcagtcttc tgagggctgg gattaagggc atgtgccact
      301 atgccctgca ttgaccctga cctttgatgt cctgcttgga ggggacagat atggggctga
      361 aaaggcttca gggtgccctt tcacaccagc ctcaggcctt ggcttgaagg ctcagtgctt
      421 gataactgtc aagtctcctc accccaacag atctccccac cccactttct ccacaggtcc
      481 cctctccaga agatgaacca ggagaggaga gatggccctg acatgtcccc tgactgtcac
      541 catctccagt ttgcagcaga accctgggct ggacatctgc cccttctctg gcagtgggac
      601 tgcctactcc tctagtacct cagccctagg gccttgcccg ccctagctgc agccagtgcc
      661 ttctgaggag gtgtggtctc tgtatggtta atgattgctc cggggaggtg gagatggtgc
      721 caaagtctgc agctgtgttc tgccgggccc agacagtgct cacctgtgac tgggtgcaca
      781 tcaccacctc tgggcccctt ccaggggttg tccagctcag ctgcttcggg ggctcttagc
      841 ccaggggtcc cttcaagatg gcctggctgt ggctgctctg tgtactgctt cctaccttca
      901 tggtgtctgt gacagccaac tcattaccag tgttcgagag caatatgaca ctagtgctcc
      961 tgccggagga cttaccagtg ggtgctgtgg tcttctggtt ggtggctact gatcccgatg
     1021 gtgatcaact gacctatgga attagtggcc tacatgccaa ctacttctct gtcacttcaa
     1081 acactgggga agtgaagctg gtcagctctt tggactttga gacacttcct tccttcagga
     1141 tcaccatctc tgtaaatgac ggtcacaacg tccaagtgac gaaggagatg caggtgattg
     1201 tggaggacag aaatgataat gcacctgttt tcctgaacac tgaattctcc accagcatca
     1261 aggagaccct tccagtcggc tccgtggtgt tctctgtgct ggctgaggac aaggacacgg
     1321 ggtcatccgg tttagtggag tatttcatag agaaggtcat ccccagcacg gacaacagca
     1381 aagatctctt ccgcatcctg gtaaacggct ccattgtgct gaatgacact ctcagctaca
     1441 acaacaaaag cgccttctac cagctggagc tgaaggcctg tgactccgga ggattgttga
     1501 ataacaccct agtcacccag tgctcccagc ccgtctttgt ttccatctca gtgatcgatg
     1561 agccagacct ggaccctcag tttgtcaggg agttttactc agcctctgtg tctgaggacg
     1621 ccaccttggg gacatctgtg ctggcggtgg aagccgtgga cagtgacaaa ggcgtcaatt
     1681 acaatgtgac ctacaatatc accaactcca caaggcctgg gtggttctgc atcgagaagg
     1741 atggggtcat cacagtctgt ggccccctgg acagagagca gctgcttttg gataatgaag
     1801 aagtgcagat acaggtcacg gccactgagg agaaacccaa catctaccag caagaggcca
     1861 aggtgagcac ctgggtcaca ataaaggtga ccgatgtcaa cgaccacaag ccggaatttt
     1921 acaactgcag cctccaaaac tgcaccttca gcccccagga ggcccaggac aacttcacag
     1981 gctatgtgga tgagcatgcc tctgccagaa tctccatcga tggtctgacc atggtggcct
     2041 acgacccaga tcagggtgcc aatggcacgt tcctgctttc cctgaatggc acagatgctg
     2101 aagccttcaa cgtgtcccca gagcgagcgg ccgtgtctgt cagtgtgcag gtggtggtga
     2161 aaaattcaga gatggtggac tacgaaaaga agacggagat gcaagtgcag gttgtggcca
     2221 ctgactcagt cagcggcaac tactcagttg ccacggtgac catccacctt cgaaacatca
     2281 atgaccaccg gcccgtgttc tctaagagtt tgtatgaact cactgtgcca gagaacagtc
     2341 caacaggttt tctggtcacc gacagcatcg aggctacaga cctagatggg gacgaatggg
     2401 gtcctatcac ctacagtctg cttccaggag ctggagaaga cctgtttgag gtggagccaa
     2461 agtcagggaa tgtgacggtg aagaatggca cgctgctgga ccgggagaag caggccatgt
     2521 actacctcac gatgcaggcc accgacggtg ggaaccagtc tactaccacc atgctgcaga
     2581 tcactctgtt ggatgtcaat gacaacccac ccgtggtccg aggctcctac aacatctttg
     2641 tgccagagga ggatggcgat gtctctgtga ccatccaggc ctatgatgat gaccagccag
     2701 gcaccaacaa cagccgcctg ctcttcagcc tgcttcctgg gtcctatagc cagaacttct
     2761 ccatagaccc ggacacaggg ctcctcagga atcttgagcc tctggaccga gaggccattg
     2821 accctgccct ggagggccgc atcgtgctaa cggtgcatgt ggctgactgt ggcgagcctt
     2881 ccctcagcac tgatgtcaat gtcaccatca ctgtggagga catcaatgac aacctgccta
     2941 tattcaacca atcctcttac gaattctttg tgatggagag agttccggga gcactggtgg
     3001 gcacagtcaa ggcctgggat gctgaccaga cagcagccaa caaccggatc agcttcagcc
     3061 tgtctgggac tggcgccaac aactttattc tccaaagcat tgtgttggca ctagggtggg
     3121 cagagggtca cctctggttg ctccccgatg tgagcctgga ttatgagacg cagaagctct
     3181 tcaacctgac agtgagtgca gagaacccag gcccccaggg cctagaatct acggcaaaca
     3241 tcaccgtggt tgtggtggat gtgaatgatg agccacctac cctggatgca gtctcactcc
     3301 agagcatctc tgtggctgag aatggctctg agcatggcca ggtggctcag gtgatagccc
     3361 aggacgtgga cactaacgcc ttgctaagga tagagctagt ggacgtcctc tgcactaagg
     3421 ctggcgttga tgtgggcagc gtctgccacg gctggttctc cgtggacacc aatggctctg
     3481 tgtacatcaa tcagagtgag gccattgact atgaggtttg ccacctggtc acgttggttg
     3541 tgcgggcaca ggacctcgcc acagacctcg gctttgacgc ttacagcagc aatggaagcc
     3601 ttctcatcaa catcaaggac aagaatgaca atacccccta ctttctgccc aacaaccaga
     3661 ccttcgtgat catcccagag cttgtgttgc ccaaccagca ggtggcttct gtccaggcca
     3721 gagatgagga ctcggaagac aacgggatca tcaagttctc catcctgaaa gcagatttcg
     3781 tccccaagga cggggctacc aaccctgtcc aggtcttccg gatttcccaa tcagtggaag
     3841 ctggcctgta cactggcagc atcgagctgg tgaccaacct tgattccact ctccaaggta
     3901 cataccaggt gacagtccag gcccaggacc agcccgctat ggatcctgcc ctcgaaacac
     3961 agaccactct gaatctcttc actgtggacc agagctaccg agtgaggctg cagttctcca
     4021 ccagcaggga ggatgttggt gccaatatgg aggagattaa ggcggccctt atccaggcga
     4081 ccaggacctc tgtgtacgtt gtgacaatcc agaacataga ctctatggct cgggcccgag
     4141 tcaactccta catggacgct tactttgtct tctccaatgg gtcagccctg actcttaccg
     4201 agctgaatgt gatgatccgg aaagaccagg atgcattgag gcagctgctg caactgggac
     4261 tggtggtggt gagctcccag gagacccagg aatttaatca gacacaactg ctcaccaacg
     4321 tcatcatagg actggtggtg tctttggtgc tggtccttgt gatcatgatc acggccctcg
     4381 tgtgttttcg gaagagctac caccggaagc ttcgagctat gaaggctggc aaagaggccc
     4441 ggaagacacc aatagagacg atgaccccag ctgctgctat cccagggact aacgtgtaca
     4501 acactgatcg ggccaacccc atgctggacc tccccaccaa ggacctggga ttggagtgcc
     4561 actcctccag tgacttggac tatcacagcc tcaattccct agacgagaac tctgtggact
     4621 tggacacgga cagtaaggaa ttcaagagga aggatcttcc acacaaccct cctgagtctg
     4681 actcagagcc cctgactgca gcgctctcag gaaggtcagc aggcacaagt ggacagcagc
     4741 agagggagct gtccttcacc aaccctggcc tggacaccac agatctgtga tggagaccct
     4801 cattcttcaa gctcaaaccg taccgtctgc cctcccctaa atataatata tgccttgctt
     4861 tgcttccta
//
