LOCUS       NM_001308479            2612 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus cadherin related family member 18 (Cdhr18), mRNA.
ACCESSION   NM_001308479 XR_340592 XR_359833
VERSION     NM_001308479.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000015.1.
            
            On or before May 8, 2015 this sequence version replaced
            XR_359833.2, XR_340592.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on RNAseq data.
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            RefSeq Select criteria    :: based on conservation
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-207               JAXUCZ010000015.1  13730490-13730696
            208-404             JAXUCZ010000015.1  13740083-13740279
            405-576             JAXUCZ010000015.1  13742498-13742669
            577-665             JAXUCZ010000015.1  13752841-13752929
            666-760             JAXUCZ010000015.1  13782074-13782168
            761-868             JAXUCZ010000015.1  13785026-13785133
            869-1065            JAXUCZ010000015.1  13785759-13785955
            1066-1243           JAXUCZ010000015.1  13787667-13787844
            1244-1406           JAXUCZ010000015.1  13789571-13789733
            1407-1509           JAXUCZ010000015.1  13791023-13791125
            1510-1608           JAXUCZ010000015.1  13795013-13795111
            1609-1841           JAXUCZ010000015.1  13799452-13799684
            1842-2013           JAXUCZ010000015.1  13803214-13803385
            2014-2255           JAXUCZ010000015.1  13804708-13804949
            2256-2455           JAXUCZ010000015.1  13805838-13806037
            2456-2475           JAXUCZ010000015.1  13808285-13808304
            2476-2543           JAXUCZ010000015.1  13809244-13809311
            2544-2612           JAXUCZ010000015.1  13809886-13809954
FEATURES             Location/Qualifiers
     source          1..2612
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /map="15p16"
     gene            1..2612
                     /gene="Cdhr18"
                     /gene_synonym="RGD1565725"
                     /note="cadherin related family member 18"
                     /db_xref="GeneID:289926"
                     /db_xref="RGD:1565725"
     exon            1..207
                     /gene="Cdhr18"
                     /gene_synonym="RGD1565725"
                     /inference="alignment:Splign:2.1.0"
     CDS             162..2612
                     /gene="Cdhr18"
                     /gene_synonym="RGD1565725"
                     /codon_start=1
                     /product="uncharacterized protein LOC289926 precursor"
                     /protein_id="NP_001295408.1"
                     /db_xref="GeneID:289926"
                     /db_xref="RGD:1565725"
                     /translation="MLSSRFLLLLLLAASGVHAAPSFVVENAGPLLENASDHTRVATV
                     TISLSPHTSLLGDPVILNASPTVHPFVLSHRSSHLWDLLLTGAPKLDFEVVALYSLTI
                     YAKDNQGATAAQTILVQIEDVNEPPDFIGPLAQKNQVTEIYIREDTAHGVIIYRAVAK
                     DPEGAMLEYSISPESSGFTIDSTGAISTATDLDFESDMRSFSLIIKVVDPGGLFATGN
                     LKIFLINVNDKDPTLACSLFNIENGVLSVLSTNSTLHHKVNLTLDEEIPVGKMIAMCQ
                     AADDDNLGDLTFGLDTVDDYFAVDKEKGTVVTTTRLDVEKTGFASALFFSIKACDGDQ
                     RCAEIPVATYIHGINDNPPFCDQYLIRYTGKEEIAKDTVVAKVSCHDLDKPPDTIHYA
                     PSSGPVGSGRLFEQVPDAKNFIQVTKELDYENPEMVAAGHIYEMMISVFDDLHPSHTV
                     TVTILVEIAPDNDFSPKFQELHYAFSVPETSGAFYKVGQVTAIDEDHPPGCLTYKIIS
                     GDIQTVQRFWIHPFSGVIELTTQPDYESVRQYNLTVEAVDCDRDHPRTALATVTVDIE
                     DENDEAPVCTPYLYTAIISDNVIAGTNVNGLRLNCHDRDSQDFEMRFEMASGNENLHF
                     QLDPTRGSNTPKLIVKNPFNFDSGAELQQRYHLVVHVIDDNLQYGKAIKPRTGTAVID
                     IYVMKTSTPPSPTSSEQRKGLTVVYTAINTYKSSDWYVPFVFTLMAVFFVGLVSWMCF
                     LLWRYGSIKSKSQRVAKEGSKPKPNGMKYVVGNRSEKEKNVITETRNKKLEVLTAGSL
                     SMPLPPGLLQGGQCCPII"
     exon            208..404
                     /gene="Cdhr18"
                     /gene_synonym="RGD1565725"
                     /inference="alignment:Splign:2.1.0"
     exon            405..576
                     /gene="Cdhr18"
                     /gene_synonym="RGD1565725"
                     /inference="alignment:Splign:2.1.0"
     exon            577..665
                     /gene="Cdhr18"
                     /gene_synonym="RGD1565725"
                     /inference="alignment:Splign:2.1.0"
     exon            666..760
                     /gene="Cdhr18"
                     /gene_synonym="RGD1565725"
                     /inference="alignment:Splign:2.1.0"
     exon            761..868
                     /gene="Cdhr18"
                     /gene_synonym="RGD1565725"
                     /inference="alignment:Splign:2.1.0"
     exon            869..1065
                     /gene="Cdhr18"
                     /gene_synonym="RGD1565725"
                     /inference="alignment:Splign:2.1.0"
     exon            1066..1243
                     /gene="Cdhr18"
                     /gene_synonym="RGD1565725"
                     /inference="alignment:Splign:2.1.0"
     exon            1244..1406
                     /gene="Cdhr18"
                     /gene_synonym="RGD1565725"
                     /inference="alignment:Splign:2.1.0"
     exon            1407..1509
                     /gene="Cdhr18"
                     /gene_synonym="RGD1565725"
                     /inference="alignment:Splign:2.1.0"
     exon            1510..1608
                     /gene="Cdhr18"
                     /gene_synonym="RGD1565725"
                     /inference="alignment:Splign:2.1.0"
     exon            1609..1841
                     /gene="Cdhr18"
                     /gene_synonym="RGD1565725"
                     /inference="alignment:Splign:2.1.0"
     exon            1842..2013
                     /gene="Cdhr18"
                     /gene_synonym="RGD1565725"
                     /inference="alignment:Splign:2.1.0"
     exon            2014..2255
                     /gene="Cdhr18"
                     /gene_synonym="RGD1565725"
                     /inference="alignment:Splign:2.1.0"
     exon            2256..2455
                     /gene="Cdhr18"
                     /gene_synonym="RGD1565725"
                     /inference="alignment:Splign:2.1.0"
     exon            2456..2475
                     /gene="Cdhr18"
                     /gene_synonym="RGD1565725"
                     /inference="alignment:Splign:2.1.0"
     exon            2476..2543
                     /gene="Cdhr18"
                     /gene_synonym="RGD1565725"
                     /inference="alignment:Splign:2.1.0"
     exon            2544..2612
                     /gene="Cdhr18"
                     /gene_synonym="RGD1565725"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gggcgaaggt gtcattttac agattaagga aatgtgtact tggtgcctag agacatgtct
       61 caataaggtg actgcagcaa gaatgtgaac atcttagaaa ttagccaact caagagagct
      121 gggacagtgt ctctgtggca gctggagcac ttgaatcaac catgctttct tcccggttcc
      181 tcctcctcct attgcttgct gcctcaggtg ttcatgctgc tccaagtttt gttgtggaga
      241 atgctggccc tctcctggaa aacgcctctg atcacacacg ggttgccacg gtcaccatat
      301 ctctctcacc tcacacttct ttgcttggag atcctgtgat ccttaatgcc agccccacag
      361 tgcatccttt tgtgctgtcc catagatcct cacacctctg ggatttactt ctcactggag
      421 cacccaagct ggactttgag gtggtagcac tctattcctt gacaatatat gccaaagaca
      481 accaaggggc aacagcagcc cagaccattc ttgtccagat cgaagatgtg aacgagcctc
      541 ctgatttcat tgggccactt gcccagaaaa atcaagttac tgagatttac atcagagagg
      601 acaccgccca cggcgtcatc atttacagag cggtggccaa ggacccagag ggtgctatgt
      661 tggagtactc catttcccca gagagctctg gcttcaccat tgacagcact ggggcaattt
      721 ccacagcaac agatttggat ttcgagagtg acatgagaag tttttcactg attattaaag
      781 tggttgatcc tggaggactg tttgctacag gaaatctgaa gattttcctc atcaatgtca
      841 acgataagga ccctactctt gcctgcagct tgttcaatat tgaaaacggg gtcttgagtg
      901 ttctctccac aaactcaact ctgcaccaca aagtcaacct cacactggat gaagaaattc
      961 cggttgggaa gatgattgca atgtgccagg cagctgatga tgacaaccta ggagatctga
     1021 cctttgggct agatacagtg gatgattatt ttgcagtgga caaagagaag gggaccgtgg
     1081 ttacgactac ccgtctcgat gtggagaaaa ctggatttgc aagtgctttg ttcttctcta
     1141 ttaaggcatg tgatggtgat cagaggtgtg cagaaattcc agtggctacc tacattcatg
     1201 gcattaatga caaccctcct ttctgtgatc aatatctgat taggtacaca ggcaaggagg
     1261 agattgcaaa agacacagtt gttgctaagg tctcatgcca tgaccttgac aaacctcctg
     1321 acacaattca ttatgctcca agttctggcc ctgtaggttc tggacggtta tttgagcaag
     1381 tgccagatgc caaaaatttc attcaggtta ccaaagagct ggattatgaa aacccagaga
     1441 tggttgcggc aggacacatt tatgaaatga tgatctcagt atttgatgac ctacatccat
     1501 cccatacagt gactgtgaca atccttgtgg agattgctcc tgacaatgat tttagcccca
     1561 aatttcaaga attgcactat gcattttcag ttccagaaac atcgggagct ttctacaaag
     1621 ttggacaagt gactgccatt gatgaagacc acccaccagg ctgtctgacg tacaagataa
     1681 tcagtgggga catccagact gtacaaaggt tttggattca ccctttctct ggagtgattg
     1741 aactcaccac tcagccagac tatgagtcag tgaggcaata taacctcaca gtggaagctg
     1801 tggattgtga cagagatcat ccacgcactg cactggccac agtcactgtt gacattgaag
     1861 atgagaatga tgaagcacct gtctgcacac cctatctata tacagcaatc atctctgaca
     1921 atgttattgc tgggacaaac gtcaatggcc tcagactaaa ctgtcacgac agagattcac
     1981 aagattttga aatgcgcttt gaaatggctt ctggaaatga aaatcttcat ttccaattag
     2041 acccaactcg agggtcaaat actccaaaat taattgtgaa gaatcctttc aactttgatt
     2101 ctggagctga actgcagcag cgatatcatc ttgtggtaca cgtaatcgat gacaacctgc
     2161 aatatggcaa agctatcaag cccaggacag gaactgctgt tatagatatt tatgtgatga
     2221 aaaccagcac accaccttct ccaaccagtt ctgaacaaag aaaaggcctg accgttgtgt
     2281 atacagccat caacacatac aaaagcagtg actggtatgt tcctttcgtc ttcactctga
     2341 tggctgtttt ctttgttgga ttggtttcct ggatgtgttt tctcctctgg agatatggaa
     2401 gcattaaaag caagtctcag agagtggcca aggaaggctc caagccaaaa cccaatggaa
     2461 tgaaatatgt tgtaggaaat agaagcgaaa aagaaaaaaa tgttatcaca gaaaccagaa
     2521 acaaaaaact agaagtgtta accgctggct ccctctcaat gcccctgccc ccaggcctcc
     2581 tacaaggagg ccagtgctgc ccaatcatct ga
//
