LOCUS       NM_001168630            2916 bp    mRNA    linear   ROD 07-MAY-2024
DEFINITION  Rattus norvegicus cadherin 9 (Cdh9), mRNA.
ACCESSION   NM_001168630 XM_226861
VERSION     NM_001168630.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2916)
  AUTHORS   Chen,H., Xu,X., Liu,Z. and Wu,Y.
  TITLE     MiR-22-3p Suppresses Vascular Remodeling and Oxidative Stress by
            Targeting CHD9 during the Development of Hypertension
  JOURNAL   J Vasc Res 58 (3), 180-190 (2021)
   PUBMED   33794525
  REMARK    GeneRIF: MiR-22-3p Suppresses Vascular Remodeling and Oxidative
            Stress by Targeting CHD9 during the Development of Hypertension.
REFERENCE   2  (bases 1 to 2916)
  AUTHORS   Williams,M.E., Wilke,S.A., Daggett,A., Davis,E., Otto,S., Ravi,D.,
            Ripley,B., Bushong,E.A., Ellisman,M.H., Klein,G. and Ghosh,A.
  TITLE     Cadherin-9 regulates synapse-specific differentiation in the
            developing hippocampus
  JOURNAL   Neuron 71 (4), 640-655 (2011)
   PUBMED   21867881
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from JAXUCZ010000002.1.
            
            [WARNING] On Jun 12, 2024 this sequence was replaced by
            NM_001168630.2.
            
            On Dec 12, 2009 this sequence version replaced XM_226861.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360190.2577462.1,
                                           SRR26360176.1027476.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760393, SAMN12840114
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-225               JAXUCZ010000002.1  68007330-68007554
            226-520             JAXUCZ010000002.1  68065054-68065348
            521-640             JAXUCZ010000002.1  68069357-68069476
            641-808             JAXUCZ010000002.1  68069967-68070134
            809-996             JAXUCZ010000002.1  68071914-68072101
            997-1250            JAXUCZ010000002.1  68073038-68073291
            1251-1387           JAXUCZ010000002.1  68086578-68086714
            1388-1509           JAXUCZ010000002.1  68087171-68087292
            1510-1627           JAXUCZ010000002.1  68088262-68088379
            1628-1879           JAXUCZ010000002.1  68088719-68088970
            1880-2916           JAXUCZ010000002.1  68093013-68094049
FEATURES             Location/Qualifiers
     source          1..2916
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q21"
     gene            1..2916
                     /gene="Cdh9"
                     /note="cadherin 9"
                     /db_xref="GeneID:29163"
                     /db_xref="RGD:1308343"
     CDS             1..2367
                     /gene="Cdh9"
                     /note="cadherin 9, type 2, T1-cadherin"
                     /codon_start=1
                     /product="cadherin-9 precursor"
                     /protein_id="NP_001162101.1"
                     /db_xref="GeneID:29163"
                     /db_xref="RGD:1308343"
                     /translation="MRTYHFLQLIVWTWIFQMVDNSPLQGKDNIHLRKRIVNLKKDDG
                     KMLHRTKRGWMWNQFFLLEEYTGTDTQYVGKLHTDQDKGDGNLKYILTGDGAGNLFVI
                     DENTGDIHAAKKLDREEKSLYILRAKAIDRKTGRQVEPESEFIIKIHDINDNEPKFTK
                     DLYTASVPEMSGVGTSVIQVTATDADDANYGNSAKVVYSILQGQPYFSVDPESGIIKT
                     ALPDMSRENREQYQVVIQAKDMGGQMGGLSGTTTVNITLTDVNNNPPRFPQSTYQFNS
                     LESAPLGTHLGRIKANDPDTGENAELEYSISEGEGSDMFDVITDKDTQEGIITVKQNL
                     DFEKKMLYTLRVDASNTHPDPRFLHLGPFKDSAMVKISVEDVDEPPVFSKLSYLMEVD
                     EDVKEGSIIGQVTAYDPDAMNNIIKYSVDRHTDMDRVFSIHSENGSIFTLKPLDRESS
                     PWHNITVTATEINNPKQSSQIAVFIRILDINDHAPEFAMYYETFVCENAKSGQLIQTI
                     SVMDKDDPPRGHKFFFEPVPEFPLNPNFTIVDNKDNTAGIITRKDGYSRNKMNTYLLP
                     VLIFDNDYPIQSSTGTLTIRVCACDNQGNMQSCNAEALMLAAGLSTGALIAILLCVVI
                     LLTLIVLFAALKRQRKKEPLIISKDDVRDNIVTYNDEGGGEEDTQAFDIGTLRNPEAR
                     EDSKLRRDVMPETIFQIRRTVPLWENIDVQDFIHRRLKENDSDPSAPPYDSLATYAYE
                     GNDSVANSLSSLESLTADCNQDYDYLSDWGPRFKKLAEMYGGDDSDRD"
     exon            1..225
                     /gene="Cdh9"
                     /inference="alignment:Splign:2.1.0"
     exon            226..520
                     /gene="Cdh9"
                     /inference="alignment:Splign:2.1.0"
     exon            521..640
                     /gene="Cdh9"
                     /inference="alignment:Splign:2.1.0"
     exon            641..808
                     /gene="Cdh9"
                     /inference="alignment:Splign:2.1.0"
     exon            809..996
                     /gene="Cdh9"
                     /inference="alignment:Splign:2.1.0"
     exon            997..1250
                     /gene="Cdh9"
                     /inference="alignment:Splign:2.1.0"
     exon            1251..1387
                     /gene="Cdh9"
                     /inference="alignment:Splign:2.1.0"
     exon            1388..1509
                     /gene="Cdh9"
                     /inference="alignment:Splign:2.1.0"
     exon            1510..1627
                     /gene="Cdh9"
                     /inference="alignment:Splign:2.1.0"
     exon            1628..1879
                     /gene="Cdh9"
                     /inference="alignment:Splign:2.1.0"
     exon            1880..2916
                     /gene="Cdh9"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgaggactt accattttct tcaactgatt gtctggactt ggattttcca aatggttgac
       61 aacagcccat tacaagggaa ggataacatt cacttacgga aaaggatagt gaatctgaag
      121 aaagatgatg gtaaaatgct ccatcgcacc aagcgtggct ggatgtggaa tcagttcttc
      181 ttgttagaag agtatacagg tacagacact cagtatgtag gaaagcttca cactgaccaa
      241 gataaaggag acggaaattt aaaatacatt ttgacaggag atggagctgg caatctgttc
      301 gttatagatg agaatacagg agatattcac gccgcaaaga aactggacag agaagaaaaa
      361 tccctgtaca ttcttcgtgc caaggctata gacagaaaga ctgggagaca agtggaacca
      421 gaatctgagt ttatcattaa aatccacgac atcaacgaca atgagcccaa attcacaaaa
      481 gacctgtaca cagccagtgt tcctgaaatg tctggagttg gtacctctgt tatacaagta
      541 acggcaactg atgcagatga cgccaactat gggaacagtg ccaaagtggt ctacagcata
      601 ctacaagggc agccatattt ttcagtggac ccagaatcag gcataataaa aactgcattg
      661 ccagacatga gcagagaaaa cagagaacag tatcaagttg ttattcaagc taaggacatg
      721 ggcggccaga tgggaggcct ctctggaact accacagtga acatcaccct aacagatgtc
      781 aacaacaacc ctcctcggtt tccacagagc acttatcagt ttaactctct ggagtctgca
      841 cctcttggaa ctcatcttgg aaggataaaa gccaatgacc ctgacacagg ggagaatgca
      901 gaactggaat acagtatttc agaaggagaa ggatcagaca tgtttgatgt gatcactgac
      961 aaagatacac aggaagggat cataactgtc aagcagaatt tagattttga aaagaaaatg
     1021 ttgtacactt taagagtgga tgcaagtaat acccatcctg atcctcgatt cttacacctt
     1081 ggacctttca aagactcagc catggttaag atctctgtgg aagatgtaga tgagccccct
     1141 gtgttcagta agctctcata cttgatggag gtggatgaag acgtaaagga ggggagcatc
     1201 ataggacaag tcacagccta cgaccccgat gccatgaaca acataataaa atactctgtt
     1261 gaccggcata cagatatgga ccgagttttc agtattcact cagaaaatgg ctctatcttc
     1321 actctgaaac ccctggatcg ggaatcatcc ccttggcata atatcaccgt tacagccaca
     1381 gagataaata acccgaaaca aagtagccaa atagctgtct tcatcagaat tcttgatata
     1441 aatgatcatg ctccagaatt tgccatgtac tatgaaacat tcgtttgtga aaatgcaaag
     1501 tccgggcagt tgattcaaac tataagtgtc atggacaaag atgatcctcc ccgaggacac
     1561 aagttctttt ttgagccagt gccagaattt cctctaaacc caaacttcac aattgtagac
     1621 aataaagata atacagcagg aattataact cgaaaagatg ggtacagccg caacaaaatg
     1681 aacacctacc tactgccagt tttaatcttt gacaatgatt atcctattca aagcagcact
     1741 ggcacactca cgatccgtgt atgcgcgtgt gataaccaag gcaacatgca gtcctgcaat
     1801 gccgaggccc tgatgcttgc tgcaggcctg agcacagggg ctctcatcgc aattctcctt
     1861 tgtgttgtca tcttgcttac tctaattgtg ctgtttgctg cactgaagag gcaacggaaa
     1921 aaggagcctc tgatcatttc aaaggatgat gtccgggaca atattgtgac ctataacgac
     1981 gaaggtggtg gagaagaaga cacacaggct tttgacatcg gcacattaag gaacccagaa
     2041 gcaagagaag atagtaaact tagaagagat gtcatgcctg aaactatttt tcagataagg
     2101 aggactgtac ctctctggga aaatattgat gtacaagatt ttatccaccg gagattgaaa
     2161 gaaaacgact cagacccaag tgcaccacct tatgattcct tggccactta cgcctatgaa
     2221 gggaatgatt ctgtagccaa ttctctcagc tccttagaat ctctcacagc tgattgtaac
     2281 caggattatg actaccttag tgactggggg ccacggttca aaaaacttgc ggagatgtat
     2341 gggggtgatg acagtgaccg ggactgagtc ctgtatgact tgatcaactt tagtagaaat
     2401 actgtcttca ataccagatt gagtggcctg tgttatccct ttttggagga aaaattaaaa
     2461 aataaaaaaa caaacaactg caaacaaata cataaaagtg ttgtcctagt aagggtttgc
     2521 ttaatcagta agtttccgtg aatgagtatg aatgatatag attttaaaac agtaataata
     2581 acctgttcac actctttgcc taataagctt ggaaaaatat atcatattaa taatcagtaa
     2641 aaattcttga aaggcttttt gtgccttgtc ttagtatagg aactttataa atgttttctt
     2701 aactgattgt cagtcacata tactatgaaa ttaaacattg tgcaactgct ttgtaaatta
     2761 agatgaaaga aaatataccc aatgaaatag gagtgactat tactgccata tttatttagt
     2821 ggaaagatgt ctttgtgttg attcactcat atttttataa atgtatattt atatttttgt
     2881 atttttatga aataaactaa tatttataaa gataaa
//
