LOCUS       NM_001012737            2361 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus cadherin 7 (Cdh7), mRNA.
ACCESSION   NM_001012737 XM_222491
VERSION     NM_001012737.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2361)
  AUTHORS   Takahashi,M. and Osumi,N.
  TITLE     Expression study of cadherin7 and cadherin20 in the embryonic and
            adult rat central nervous system
  JOURNAL   BMC Dev Biol 8, 87 (2008)
   PUBMED   18801203
  REMARK    GeneRIF: Expression of cad7 and cad20 demarcates the compartments,
            boundaries, progenitor domains, specific nuclei and specific neural
            circuits during mammalian brain development.
            Publication Status: Online-Only
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AB121031.1.
            
            [WARNING] On Jul 15, 2024 this sequence was replaced by
            NM_001012737.2.
            
            On Apr 20, 2005 this sequence version replaced XM_222491.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AB121031.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760393, SAMEA5760396
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2361
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="Sprague-Dawley"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /map="13q11"
     gene            1..2361
                     /gene="Cdh7"
                     /gene_synonym="Cad7"
                     /note="cadherin 7"
                     /db_xref="GeneID:29162"
                     /db_xref="RGD:1306856"
     CDS             1..2358
                     /gene="Cdh7"
                     /gene_synonym="Cad7"
                     /note="Cadherin7; cadherin 7, type 2"
                     /codon_start=1
                     /product="cadherin-7 precursor"
                     /protein_id="NP_001012755.1"
                     /db_xref="GeneID:29162"
                     /db_xref="RGD:1306856"
                     /translation="MKLGKVELCRFLQLIALFLCFSGMNQAELPRSRSKPYFQLGRSR
                     TKRSWVWNQFFVLEEYMGSDPLYVGKLHSDVDKGDGFIKYILSGEGASSIFIIDENTG
                     DIHATKRLDREEQAYYTLRAQALDRLTNKPVEPESEFVIKIQDINDNEPKFLDGPYTA
                     GVPEMSPVGTSVVQVTATDADDPTYGNSARVVYSILQGQPYFSVEPKTGVIKTALPNM
                     DREAKDQYLLVIQAKDMVGQNGGLSGTTSVTVTLTDVNDNPPRFPRRSYQYNGPESLP
                     VASVVARIKAADADIGVNAEMEYKIVDGDGLGIFKISPDKDTQEGIITIQKELDFEAK
                     TSYTLRIEAANRDADPRFLSLGPFSDTTTVKIIVEDVDEPPVFSSPLYPMEVSEATQV
                     GHIIGTVAAHDPDSSNSPVRYSIDRNTDLERYFNIDANSGIITTAKSLDRETNPVHNI
                     TVLAMESQNPSQVGRGYVAITILDINDNAPEFAMDYETTVCENAQPGQVIQKISAIDK
                     DEPSNGHQFYFSLTTDMANNLNSSLKDNKDNTASILTRRNGFRRQEQSVYYLPIFIVD
                     NGSPSLSSTNTLTIRVCDCDADGIAQTCNAEAYILPAGLSTGALIAILACVLTLLVLI
                     LLIVTMKRRKKEPLIFDEERDIRENIVRYDDEGGGEEDTEAFDMAALRNLNVVRDTKT
                     RRDVTPEIQFLSRPTFKNIPDNVIFREFIWERLKEADVDPGAPPYDSLQTYAFEGNGS
                     VAESLGSLDSNSSNSDQNYDYLSDWGPRFKRLAEMYGNGQESLYS"
     exon            1..210
                     /gene="Cdh7"
                     /gene_synonym="Cad7"
                     /inference="alignment:Splign:2.1.0"
     exon            211..505
                     /gene="Cdh7"
                     /gene_synonym="Cad7"
                     /inference="alignment:Splign:2.1.0"
     exon            506..625
                     /gene="Cdh7"
                     /gene_synonym="Cad7"
                     /inference="alignment:Splign:2.1.0"
     exon            626..793
                     /gene="Cdh7"
                     /gene_synonym="Cad7"
                     /inference="alignment:Splign:2.1.0"
     exon            794..981
                     /gene="Cdh7"
                     /gene_synonym="Cad7"
                     /inference="alignment:Splign:2.1.0"
     exon            982..1235
                     /gene="Cdh7"
                     /gene_synonym="Cad7"
                     /inference="alignment:Splign:2.1.0"
     exon            1236..1372
                     /gene="Cdh7"
                     /gene_synonym="Cad7"
                     /inference="alignment:Splign:2.1.0"
     exon            1373..1494
                     /gene="Cdh7"
                     /gene_synonym="Cad7"
                     /inference="alignment:Splign:2.1.0"
     exon            1495..1612
                     /gene="Cdh7"
                     /gene_synonym="Cad7"
                     /inference="alignment:Splign:2.1.0"
     exon            1613..1864
                     /gene="Cdh7"
                     /gene_synonym="Cad7"
                     /inference="alignment:Splign:2.1.0"
     exon            1865..2361
                     /gene="Cdh7"
                     /gene_synonym="Cad7"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgaagctgg gcaaagtgga gctgtgccgt tttctacagc ttatagctct cttcctgtgt
       61 ttctctggga tgaatcaagc tgagctgcca aggtccagat ccaagccata cttccagtta
      121 ggaaggtccc ggaccaagcg cagctgggtt tggaatcagt tcttcgtgct ggaagaatac
      181 atgggttcag atcccctcta tgtagggaag cttcactctg atgttgataa aggagatggt
      241 ttcatcaagt acatcttgtc aggtgaaggg gcaagttcaa ttttcattat tgatgagaac
      301 actggtgata tccatgctac taagagactg gaccgggagg agcaggccta ttatacactc
      361 agagcccaag ctctggacag actcaccaac aagcctgtgg agcccgaatc agaatttgtt
      421 attaagattc aggatatcaa cgacaatgaa cccaaatttc tagatggtcc atacacagca
      481 ggagttcctg agatgtctcc tgtggggact tcagtggttc aagtgacagc aacagatgct
      541 gatgatccta cttatggcaa cagtgctcga gtagtctata gtattctgca gggacagcca
      601 tacttctcag tggaaccaaa gacaggagtc atcaagactg cccttccaaa catggataga
      661 gaggctaaag accagtattt gcttgtcatt caggcaaagg atatggttgg gcaaaatggc
      721 ggattgtctg gaacaacttc agttactgtg accctaactg atgtcaatga taacccacct
      781 cgctttccac gaaggtctta ccagtataat ggtccagaat ctttgcctgt ggcatcagtt
      841 gtggccagaa ttaaagctgc agatgcagat ataggagtca atgcagaaat ggaatataaa
      901 atagtggatg gtgatggact gggcattttc aagatatctc ctgacaaaga cacacaggaa
      961 ggaatcatta caatacagaa ggagctcgat tttgaagcca aaacaagtta tacactgcgc
     1021 atagaagctg caaatcgaga tgctgatccc cggtttctga gcttgggtcc attcagtgac
     1081 acaacaacag ttaagataat tgtggaagac gtggatgagc cccctgtgtt ttcgtcaccc
     1141 ttgtatccaa tggaggtgtc agaagcgaca caggtggggc atataattgg cactgtagca
     1201 gctcatgacc cagattcttc caacagccct gtgaggtact caattgacag aaacacagac
     1261 ctggagagat atttcaatat tgatgccaac agtggaatta ttactactgc caaatcattg
     1321 gatcgagaga caaatcctgt tcataacatt acagtcctcg caatggagag ccagaatcca
     1381 tcccaggtgg ggagaggcta tgtggccatc actatactgg atattaatga caatgctccc
     1441 gagtttgcca tggactatga aaccactgtc tgtgaaaatg ctcagccagg acaggttatc
     1501 cagaaaatca gtgcaataga taaagacgag ccatccaatg gacaccagtt ttacttcagc
     1561 ttaacaaccg atatggcaaa taaccttaac tcctctttga aagataacaa agacaataca
     1621 gcctcaatac taaccaggag aaatggcttc cgcagacagg aacagtcagt ttattatctg
     1681 ccgattttca tcgtggacaa cggatctcct tcactaagca gtacgaacac acttaccatc
     1741 cgtgtctgcg actgtgatgc tgatggcata gcgcagacct gcaatgcaga ggcctacatt
     1801 ctacccgctg gcctcagcac tggggccctg attgccatac tggcctgtgt cctgacacta
     1861 ttggtgttga tcctccttat tgtcactatg aaaagacgaa aaaaagagcc tctcattttt
     1921 gatgaggaga gggatattag agaaaacatc gtcagatatg atgatgaagg cgggggagaa
     1981 gaagacacag aagcttttga tatggctgca ctgagaaacc tcaatgtcgt aagagacacc
     2041 aaaactcgga gagatgtgac tcctgaaatt cagtttttga gtcgaccgac ttttaaaaac
     2101 atcccagata atgtcatttt tagggaattt atttgggaaa gactaaagga agctgatgtg
     2161 gatccagggg caccaccata tgactcgctt cagacttatg catttgaagg aaatggctca
     2221 gtagctgaat ctctcggttc tttagattct aacagctcga actctgatca gaattatgac
     2281 taccttagtg actggggtcc tcgctttaaa cgactggctg aaatgtatgg aaatgggcaa
     2341 gagagtttgt actcatagcc t
//
