LOCUS       XM_039106755            5734 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus cadherin 4 (Cdh4), transcript variant
            X3, mRNA.
ACCESSION   XM_039106755
VERSION     XM_039106755.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5734
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5734
                     /gene="Cdh4"
                     /gene_synonym="Cdh4l"
                     /note="cadherin 4; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 6 ESTs, 9 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:114588"
                     /db_xref="RGD:621091"
     CDS             252..2354
                     /gene="Cdh4"
                     /gene_synonym="Cdh4l"
                     /codon_start=1
                     /product="cadherin-4 isoform X3"
                     /protein_id="XP_038962683.1"
                     /db_xref="GeneID:114588"
                     /db_xref="RGD:621091"
                     /translation="MEVFNIDSMSGRMYVTRPMDREERASYHLRAHAVDMNGNKVENP
                     IDLYIYVIDMNDNRPEFINQVYNGSVDEGSKPGTYVMTVTANDADDSTTANGMVRYRI
                     VTQTPQSPSQNMFTINSETGDIVTVAAGLDREKVQQYTVIVQATDMEGNLNYGLSNTA
                     TAIITVTDVNDNPPEFTTSTFAGEVPENRIETVVANLTVMDRDQPHSPNWNAVYRIIS
                     GDPSGHFSVRTDPVTNEGMVTVVKAVDYELNRAFMLTVMVSNQAPLASGIQMSFQSTA
                     GVTISVTDVNEAPYFPSNHKLIRLEEGVPAGTALTTFSAVDPDRFMQQAVRYSKLSDP
                     ANWLHINTSNGQITTAAVLDRESLYTKNNVYEATFLAADNGIPPASGTGTLQLYLIDI
                     NDNAPQLLPKEAQICERPGLNAINITAADADMDPNIGPYVFELPFIPTTVRKNWTITR
                     LNGDYAQLSLRILYLEAGVYDVPIIVTDSGNPPLSNTSVIKVKVCPCDENGDCTTVGA
                     VAAAGLGTGAIVAILICIVILLTMVLLFVVWMKRREKERHTKQLLIDPEDDVRDNILK
                     YDEEGGGEEDQDYDLSQLQQPEAMEHVLSKAPGVRRVDERPVGAEPQYPVRPVVPHPG
                     DIGDFINEGLRAADNDPTAPPYDSLLVFDYEGSGSTAGSVSSLNSSSSGDQDYDYLND
                     WGPRFKKLADMYGGGEED"
ORIGIN      
        1 ttcgggccat gcaaactccc agcgggaaca aaaaatgaga aattgcaacc tgttctcctg
       61 gggaaatctc tagctttaat acagtacaag aggaggcaca gaagcgcttc accagagatc
      121 cgtgtcctgc tgaacaggct tgaccctaag gattatctga gcatattttg aaatgccaga
      181 tcaggtcgga caaagacaat gacatcccca tccgctacag catcacgggg gtaggcgccg
      241 accagccccc catggaggtc ttcaacatcg actccatgtc tggccggatg tatgttactc
      301 ggcccatgga cagagaggaa agagcctctt accacctccg agcccacgca gtggatatga
      361 acggtaacaa ggtggagaat ccgattgatc tgtatatcta cgtcatcgac atgaatgaca
      421 accgtcccga gttcatcaac caggtctaca acggctctgt ggatgagggc tccaagccag
      481 gtacatacgt aatgacggtc accgccaacg atgcagatga cagcaccaca gccaacggca
      541 tggtgagata ccggattgtc acccagacgc cccagagccc atcccagaac atgttcacca
      601 tcaacagtga gacaggggac atcgtgactg tggcagcggg cctggaccga gagaaagtcc
      661 agcagtacac ggtcatcgtc caggccactg acatggaagg aaaccttaat tatggtctct
      721 cgaacacggc cacggccatc atcacggtga cagacgtaaa tgacaaccct ccagaattca
      781 ccaccagcac atttgcagga gaggtccccg aaaaccgtat agagacagta gtggccaacc
      841 tcacagtgat ggaccgagac cagccccact cacccaactg gaatgctgtc taccgaatca
      901 taagtggaga cccctccggg cacttcagtg tccgcacaga ccctgtgacc aatgagggca
      961 tggtcaccgt ggtgaaggca gtggactatg agctgaaccg tgccttcatg ctgaccgtaa
     1021 tggtatccaa ccaggcgccc ctggccagcg ggatccagat gtccttccag tccacagcgg
     1081 gggtaaccat ctctgtcacc gatgtcaacg aagcccccta cttcccctcc aaccataaac
     1141 tgatccgcct ggaagagggt gtgcctgccg ggacggctct caccactttt tctgcagtgg
     1201 accctgaccg gttcatgcag caagccgtga ggtactcgaa actgtctgat cccgccaact
     1261 ggctgcacat caacacatcc aatgggcaga tcaccacggc cgcagtcctg gaccgagagt
     1321 ccctctatac caagaacaat gtatatgagg ccaccttcct ggctgctgac aatgggatcc
     1381 ccccagccag tggcactggg accctgcagc tctacctcat cgatatcaat gacaacgcac
     1441 cacagctgct gcccaaggag gcacagatct gcgagaggcc tggcctcaac gccatcaaca
     1501 tcaccgcagc cgacgccgat atggacccca acatcggccc ttacgtcttt gagttgccct
     1561 tcatccccac tacggtgagg aagaattgga ccatcacccg cctaaatggt gactatgccc
     1621 agctcagttt gcgcattctg tacctggaag caggggtgta tgacgtcccc atcattgtca
     1681 cggactctgg caaccctccc ctgtccaaca catccgtcat aaaggtcaag gtgtgcccgt
     1741 gcgatgagaa tggcgactgt accacggtcg gtgcagtggc tgcagctggc ctgggcacgg
     1801 gcgccatcgt ggcgatcctc atctgcatcg tgatcctgct aaccatggtc ctgctgttcg
     1861 ttgtgtggat gaagcggagg gaaaaggaga gacacacgaa gcagctgctc atcgaccctg
     1921 aggacgacgt gagggacaac atcctgaagt acgacgagga aggcggcggc gaggaggacc
     1981 aggactacga cctcagccag ctacaacagc cagaagccat ggagcatgtg ctgagcaagg
     2041 cccctggtgt gcggcgagtg gatgaacggc cagtaggtgc cgaaccccag tacccagtca
     2101 ggcctgtggt gccacaccca ggagacattg gagacttcat caatgaggga ctccgagctg
     2161 ctgacaatga ccctaccgca cccccctatg actccctgct ggtcttcgac tacgaaggca
     2221 gcggttctac tgcaggctct gtcagctccc tgaactcctc cagctccggg gatcaagatt
     2281 acgactactt gaatgactgg gggccccggt tcaagaagtt ggcggacatg tatgggggtg
     2341 gcgaggagga ctaaccgacc tcaccaccgt cgtgagaagg gcactagagg ctgagcagca
     2401 gaactgagcc aaggtgccag agccgtctgg tgtcgagaga tccctccccg ctgccgtccc
     2461 cgcgcggagc tctgcagtat ggacggacac aggccaccgg gcacccacca tcgctgcggc
     2521 atctcggtag tcacagccac gtaccgtgaa gggagagcca gaggcacagc cctaacttga
     2581 atttcttacc acaaaagcac tgttaaaaca aaacaaacaa acaaaaaaac aaaacaaaac
     2641 aaaagtgcct tttggtacat gacagattcc ctaactcagg agtgactgaa agaggagaga
     2701 cagcccgaga cccccacttc tgtccacccc gccccacagc cacagcccca ttaggtacct
     2761 tctgaaggtg gtgagcaatg ggagacaatg tcctttttta tttttaaagc cttttattaa
     2821 gaaacagaaa gtaggtaact tatttgcaaa aacagatctc aacagcttct gttaggcata
     2881 gccagcgtct cctgggccct ttggcctccc cgaggctgtt aggtgaggat caggctttcc
     2941 agcaccaaaa aagcactggg ccagcccaac cccatcagca gagccacttc tgtgtggact
     3001 aggccttcac ctgaatgttt gctctgcccc tacacactgt aagtagctgg ggcaggtgtg
     3061 acgcctgaag accttcccgg gagtcctcac ctctccactt ggccactgcc acaccctcaa
     3121 gtccaccata aagcctctct ctggaccagc tgtcgccccc aatcccaccg aagtcccctt
     3181 tttgctttgg tctgggacag tccattgtct aagaagctgc agcatcctgc agaaccctag
     3241 tccagccatc cactcttcag gatgagaccc cgagggatcc cgttgaaggc atagcaatca
     3301 caaaccctcc actcagcgga cccctgaacg ctctcaacac cctccccagg ctgtgcagac
     3361 gcagacgcaa aaggcagagc ctggccggac tccggcagct gcttggcctc cttgggctcg
     3421 gctaacctga gctcccacct ggtcccatga actgctatgg atgtgaggac ctaccaagag
     3481 gccggcgaga ttaccttgct gtgcccctgt gaccacagag ggacccatgt ttctgttgtt
     3541 ctctggagct ggtggggcac ttaaccacgg cagcttgagc gtggggcgaa ctgggcaggg
     3601 tgaccgcttc tgcaggacag caaagaggcc atgtacaaga acctacggga gatggcaaag
     3661 cttacctttt cactagaggg gaaaacagac ctaggacgtt cacatgtctg ggcccaaaag
     3721 agccctggga tggggcagaa aggcaggcac caatgaagca tcctgtgctg agtcttcctg
     3781 gcttacccca tgctataaga tactcccaag gaaggggttg aagagtgctg attgcttggg
     3841 agaccttggt gtcagagtct tcttggggag acaacagaag tcccggcatt gaggagaaat
     3901 aagtttcttc cagatctcta acccatacct acaactgggg ggtcagggag atctcaaaag
     3961 ggctgggggt ccccaggaga tcgcatgctc ccttgccagg ggtctctaat ccatggctcc
     4021 ccttggcttc tttactccgt tgctagatcc cctttcccag actgctttgg cctcaaagat
     4081 gcacctgagt gaactcacag gtgcccaact cgtgggtatg acccattgga tgtcagggtt
     4141 ctttcccaaa tcaaacccat gcccacctct gaactcctgg acttgagctg ggtttctagc
     4201 tcacctgtgt ctcctcactc ctcataccgc tgtcctagga ggggggatga acaggggcct
     4261 ctgtcccttc ctgggtgtcc ccctgcctac agccagcagt gctcgtgaag ggggatggga
     4321 gggctgtcct atgcaaattg ctcaaatcgg gtggtgctga gcttggcatg gccactggtg
     4381 ggatggactg ttgagggtta gggctgggga gttgaaaatg atttttctgg gtttgatttt
     4441 agaaaaccca agaaggttct tggaagtgtg catatgtttg gtaggcacgg gaggcaagaa
     4501 ctctcctgaa atcccaaggc tttcttagaa gcctaggacg ggaggtacca aacccatcag
     4561 ttacctggag gcatgtctca cctgcctcca cctccttctc cctaccctcc aaggcctctg
     4621 tcactgccag gcccctgcag gagcttgtcc ctttcaccct acaccccagt gagcccctag
     4681 ggctagagga agatagggtt ctacacacac ccccagaccc atcttggaac tccgttccca
     4741 ggccaacaag ttagcattag ccaagcatac agtcagtgtc aaatgtttct cttctgtagc
     4801 ttgtagatac aatgcgtcta tggtcagggc ccagccaacc taggctggtg gccagctccg
     4861 tgcagtgtga ggatgtggtt tggttccttt aaggagaaac ctataccact gagtggcttg
     4921 gaagaacaac acctggccac ggtcagcctc ggtcacacct gactccccgg ccggcagctt
     4981 ttctctctca tgtctttcag cacatccaaa atgctgggtc tcctgccacc aaaatgtcag
     5041 agtaatggcc aacatcaggc cctcagagat gcctcagttt ccccatagtg agtatgtggt
     5101 ccattgagac gacacctctg tgctctctaa ggtaaacagg aggggaagtc tctatttcca
     5161 cccacaccga aaggcaaaac caaaaaccca cagcagaatc tccctgcaca gagcaccggg
     5221 tgtggtagtg catagaccac atacctagca ggctctacca caccagtcag ccggtggaaa
     5281 ccacctccgt gtacaccggg gacgcatctt gcttttcctt cctctcctgt tttccattga
     5341 tttattttct gcatgtttat ttttgaaaat ggacaaatgt gtagcagccc gcatgaccgt
     5401 ggttgtttcg ggaaagatac cggagtatga tgtgctcaca ctgcagctct gagcgccatg
     5461 cggtgagaca gacgttccga ctttttttgt aatcgtcaac agcacaaata ttttgtattg
     5521 tcgtttgtat cattttgtac cgaaaaagaa aaaagaaaaa aaaaaacaaa acaagaacaa
     5581 aaagggaaga gagttgatgt ttttcgatgt gtttttagtg ccaggcagtc ttggttccgg
     5641 agggaacgca gctttgcgga attgtcgtgt ccaggagtgg agtcgggcgt tagcacgctg
     5701 ctccaaagga ggaaataaag tcccctttga agta
//
