LOCUS       NM_001191745            4072 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus cadherin 26 (Cdh26), mRNA.
ACCESSION   NM_001191745 XM_230942
VERSION     NM_001191745.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4072)
  AUTHORS   Caldwell,J.M., Collins,M.H., Kemme,K.A., Sherrill,J.D., Wen,T.,
            Rochman,M., Stucke,E.M., Amin,L., Tai,H., Putnam,P.E.,
            Jimenez-Dalmaroni,M.J., Wormald,M.R., Porollo,A., Abonia,J.P. and
            Rothenberg,M.E.
  TITLE     Cadherin 26 is an alpha integrin-binding epithelial receptor
            regulated during allergic inflammation
  JOURNAL   Mucosal Immunol 10 (5), 1190-1201 (2017)
   PUBMED   28051089
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On Nov 4, 2022 this sequence version replaced NM_001191745.1.
            
            Sequence Note:.
            
            ##Evidence-Data-START##
            RNAseq introns :: partial sample support SAMN06621351, SAMN16676785
                              [ECO:0000350]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-367               JAXUCZ010000003.1  185898431-185898797
            368-472             JAXUCZ010000003.1  185910251-185910355
            473-634             JAXUCZ010000003.1  185912233-185912394
            635-782             JAXUCZ010000003.1  185919646-185919793
            783-949             JAXUCZ010000003.1  185921479-185921645
            950-1078            JAXUCZ010000003.1  185922063-185922191
            1079-1264           JAXUCZ010000003.1  185923256-185923441
            1265-1533           JAXUCZ010000003.1  185926660-185926928
            1534-1676           JAXUCZ010000003.1  185929077-185929219
            1677-1922           JAXUCZ010000003.1  185931492-185931737
            1923-2138           JAXUCZ010000003.1  185933168-185933383
            2139-2269           JAXUCZ010000003.1  185933882-185934012
            2270-2323           JAXUCZ010000003.1  185939771-185939824
            2324-2398           JAXUCZ010000003.1  185944099-185944173
            2399-4072           JAXUCZ010000003.1  185949219-185950892
FEATURES             Location/Qualifiers
     source          1..4072
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q43"
     gene            1..4072
                     /gene="Cdh26"
                     /note="cadherin 26"
                     /db_xref="GeneID:311693"
                     /db_xref="RGD:1311632"
     exon            1..367
                     /gene="Cdh26"
                     /inference="alignment:Splign:2.1.0"
     CDS             317..2602
                     /gene="Cdh26"
                     /note="cadherin-like protein 26; cadherin-like 26"
                     /codon_start=1
                     /product="cadherin-like protein 26 precursor"
                     /protein_id="NP_001178674.1"
                     /db_xref="GeneID:311693"
                     /db_xref="RGD:1311632"
                     /translation="MDTSVCAWLLLLLSLPQGQSHQPLHRSKRRWVLTTLELQEEDPG
                     PFPKLVGELFNNMSKNVSLMYLIRGPGVDEFPEIGLFSIEDRQSGKIYVHRPVDREMT
                     PSFMVYFDAVDRSTGKVVDESLIFNIRIRDVNDHAPQFPEKEFSITVKESQAAGQPIF
                     QLLTVDLDQENTPNSQVLYFLVSQTPLLRESGFRIDLISGEVRLSGCLHYETAPRFTL
                     IIRASDCGEPSLSSTATIHISVEDSNNHMPTFTDDHYTIQISEGQVERDVLYLPVHDG
                     DSPFTPAWRTQFNIWDGNEEGHFDITTDPETNQGLLSIIKPLDYETQVAHSLLIVVEN
                     QEQLFNCQEGQLQPLRKAMASTTVSVQVLDTNDPPAFHPRSFIVSEEDGAWPAIQLGY
                     FNATDPDRADSQIRYELVRDPENWVTVDEKSGEVTTKRQIDRESPHVNGSFYTIVVHA
                     IDNGLPPLTGTGTLMLFLYDVNDNAPILQPHSRHLEICESAGNKALLLEAEDADLDPY
                     AGPFTFDLDSDQGDVREIWMLRIKQEEGHSAELIMRRSLPPGDYLVPLFIGDRQGLAQ
                     KQTVHVRICSCPSGSDCEEHSDPGLLWWALSPVCAAVMALSASLLGLLRCYCVFGPKR
                     LRGFIPSDSGHQTLIVSNEETKALSAQGCGMFFEPRGAKNLTSTPIYLERMVPRRPLQ
                     LTEGRVVEMWSQKLQGVDVLEGDTGDLPHVYREEGECEGAETLSSLTFLEQDLSSELL
                     DSSGSKSTPPEAMCFTSRVPS"
     exon            368..472
                     /gene="Cdh26"
                     /inference="alignment:Splign:2.1.0"
     exon            473..634
                     /gene="Cdh26"
                     /inference="alignment:Splign:2.1.0"
     exon            635..782
                     /gene="Cdh26"
                     /inference="alignment:Splign:2.1.0"
     exon            783..949
                     /gene="Cdh26"
                     /inference="alignment:Splign:2.1.0"
     exon            950..1078
                     /gene="Cdh26"
                     /inference="alignment:Splign:2.1.0"
     exon            1079..1264
                     /gene="Cdh26"
                     /inference="alignment:Splign:2.1.0"
     exon            1265..1533
                     /gene="Cdh26"
                     /inference="alignment:Splign:2.1.0"
     exon            1534..1676
                     /gene="Cdh26"
                     /inference="alignment:Splign:2.1.0"
     exon            1677..1922
                     /gene="Cdh26"
                     /inference="alignment:Splign:2.1.0"
     exon            1923..2138
                     /gene="Cdh26"
                     /inference="alignment:Splign:2.1.0"
     exon            2139..2269
                     /gene="Cdh26"
                     /inference="alignment:Splign:2.1.0"
     exon            2270..2323
                     /gene="Cdh26"
                     /inference="alignment:Splign:2.1.0"
     exon            2324..2398
                     /gene="Cdh26"
                     /inference="alignment:Splign:2.1.0"
     exon            2399..4072
                     /gene="Cdh26"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctttcctccg gctgagctat aatccccaag gccggatgcc caaccacttt tctgtgtaca
       61 cacatagctt tggtgtttgt atcggagcac ctgtttccct agaactctgt ggccacagac
      121 gaggttatgc ctcatccgtc agcccacctt ctctgataaa tgaaggctgg gcggagaata
      181 aagggtgcag caaagtcaag tgtcatgtct taagtacccg aagggtgact ggaagcaatg
      241 tcactggttg gagaggaagt gcctggctcc tggtgaggct tccagactcc aaggactctc
      301 tggtgcccag cccagcatgg acaccagcgt ctgtgcctgg ttactgctgc tgctgtcctt
      361 gccacaggga cagagccacc agcctctaca tcgatccaag agaagatggg ttctaaccac
      421 tctggaactg caggaggaag acccagggcc ctttcctaaa ctggttgggg agctcttcaa
      481 taatatgtca aagaatgtgt cgctgatgta tttaatcaga ggacctggtg tggacgaatt
      541 tccagagatt ggtttattct ctatagaaga tcgccagagt ggaaaaatat acgttcaccg
      601 ccccgtggat cgagaaatga caccgtcttt tatggtttac tttgatgcgg tggatcgatc
      661 cacagggaaa gttgtggatg aatccctgat tttcaacatt agaatcagag acgtgaatga
      721 tcatgcgccc cagtttcctg agaaggaatt tagcatcact gtgaaggaga gccaagccgc
      781 aggtcaacct atttttcagt tgttaacggt cgatttggat caagaaaaca ctccgaactc
      841 tcaagtcctt tatttcctcg tctctcaaac gccattactg agagaaagtg gctttcggat
      901 tgatctcatc agcggggaag tgcgactctc gggatgcttg cattatgaga ctgctcctcg
      961 gttcacactg atcatcagag caagtgactg tggagagccg tccctgtcat ccacagccac
     1021 cattcacatc agtgtggagg acagcaacaa ccacatgccc acctttacag acgaccatta
     1081 tacgattcag atttctgaag gtcaagtcga acgggacgtg ttgtatctcc ctgttcacga
     1141 tggagactct ccatttacac cagcgtggag aacacagttc aacatatggg atggcaacga
     1201 ggaggggcat tttgacatca cgactgaccc tgagaccaac caagggttat taagtattat
     1261 caagcctttg gattatgaaa cccaagtggc ccacagcctc ctcattgttg tggagaatca
     1321 ggagcagctc ttcaattgtc aggagggcca gctgcagcca ttgaggaagg cgatggccag
     1381 caccaccgtc agcgtgcagg tgctggacac caatgaccca ccagcctttc acccgaggag
     1441 cttcatcgtc agtgaggagg atggagcctg gcctgccatc cagctgggat atttcaatgc
     1501 tacagaccca gacagggctg acagccagat aagatacgaa ctggttcgtg atccagaaaa
     1561 ttgggtgact gtggatgaga agtcaggaga ggtcaccacc aagaggcaaa tagaccggga
     1621 gtcccctcat gtgaatggca gcttctatac aatcgtcgtc catgccattg acaacggcct
     1681 ccccccactg actggcacgg ggactctgat gcttttcctg tatgatgtca acgacaatgc
     1741 tccaattctc cagccccatt cccgacactt ggagatctgt gagtcggctg gaaacaaggc
     1801 cctgctgttg gaagccgagg atgcagacct ggacccctac gctggcccct ttacttttga
     1861 tttggactct gaccagggag atgtgagaga gatttggatg ctgaggataa agcaggagga
     1921 aggccattct gctgaactca taatgcggag aagcctccca cccggggact acctggtgcc
     1981 actcttcata ggagacagac agggcctcgc ccagaagcag acagtccacg tgaggatctg
     2041 ctcctgcccc agtggatctg actgtgagga acattcagac ccagggctcc tgtggtgggc
     2101 gctgtcccca gtctgtgcag cagtcatggc tctatcagcc tctctcctcg gcctgctgcg
     2161 gtgctactgc gtgtttggac ccaagaggct cagaggcttc atcccaagtg acagtggcca
     2221 ccagacactg attgtgtcta atgaggaaac caaagccctt tcagcccagg gttgtggcat
     2281 gttctttgag ccaagaggag cgaaaaactt aacttccacc ccgatctatc tggagcgcat
     2341 ggtgcccaga cgtcccctgc agctgacgga aggaagggtg gtggagatgt ggagccagaa
     2401 gctccagggt gtcgatgttc tggaaggtga cactggcgac ctgcctcatg tgtacagaga
     2461 ggagggagag tgtgaaggag ctgagaccct cagctctctc accttcttgg agcaggacct
     2521 ctcctctgaa ctgctggact cttcaggctc aaagtctact ccacctgaag caatgtgttt
     2581 tacatcaaga gttccttcat aaagacatgt gaggggcatg atttgggaga atggtcacta
     2641 tccatggacc tctctttttg ttctttaccc ttagtcactt cctggtctgc agtggtttgt
     2701 gttgcaaatt tgacaatcac ctggtaaaca cctgcaagat gtacctctgg catgtcgctg
     2761 gcgggttagc ttgtgtgtat taaaagagat ggggagaagt gcccactgtg ggtggcacca
     2821 ttccctaggc tgtggatggt gccattccct ggctggaatc atggatggta tacatggaga
     2881 aagcaaacta agcattatcg ttcaccactc tctgcttcct gatctcagaa gaccgtgact
     2941 ggctgattta gactcccgcc actttgcttc ccgccatgat ggactgcacc cttgaactga
     3001 gccagaataa acccttcctc ttctaggtca cttttatcac agtgttttat cacagcagca
     3061 ggaaggaacc tgagacgtgg tcctagggtg aggatcaacc acggatccga actcagtgtc
     3121 ttgataaaac aaagtggaat ggcaggttgt gtgctttata aatgtgattt gttgtacttc
     3181 ctggaaaaac ttaaatcgaa tcacgtatcc tttgcatcgg tttgcctctc agctctgatg
     3241 gtaagtgaaa acccaaccca tggatcaccc gactgcttgg ccagcagtag ttgattctgt
     3301 gaggaagtgg aaatgggttt tgagaagatt acttacattt ctgtaattgt cgtcctgctt
     3361 cattttaagc ggagaaaggt aaaagacggg aaagcgtctc ccagagtatt tgtaataagt
     3421 gttttcagtg atttttaaaa aaagataaca gtccctttcc acactttgat tagctaaacc
     3481 agctatgtta tttcggggaa aaataattaa gcttaaaatc gtataaacag aacgtgcttt
     3541 gaaaatctaa gacagacccg ccatgattta acttcctcct atcagtatag taaaagaatt
     3601 tttaaaaact ttgaagaaat atgttctgat tagatttttg tttaaacaag accataacgt
     3661 tttgctggat tttgttgtcc tcctggtgtt catataaatt gtagggtaga tgtggggtgg
     3721 gtggggcagg gtggcggcat tcttttaaaa cttgtacaca aggacgtggg cccttttaaa
     3781 agtctgagca gttagtaagc actgacttaa caaagtttgt cctctgactt aaacgtgtgt
     3841 accatggcct gtgtatctat gcacacacag cacacgtgca cacacagcac acatgcacac
     3901 acagcacgca caaaataata aaagaaaaaa tattttcagt ctcagttttt ggctagggct
     3961 agtaaaacag tcatcaggtc tttctagatg caagccaaga gaaagaaaat gagcaccgtg
     4021 gaggaatctg gcccattgtc tgttcttgta aataaagttt tatcgacacc ca
//
