LOCUS       XM_008770708            3421 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus cadherin 24 (Cdh24), transcript
            variant X1, mRNA.
ACCESSION   XM_008770708
VERSION     XM_008770708.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051350.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 17, 2024 this sequence was replaced by
            NM_001427281.1.
            
            On Jan 21, 2021 this sequence version replaced XM_008770708.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3421
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3421
                     /gene="Cdh24"
                     /note="cadherin 24; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 3 ESTs, 4 long SRA reads,
                     15 Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 129 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:498515"
                     /db_xref="RGD:1560161"
     CDS             288..2633
                     /gene="Cdh24"
                     /codon_start=1
                     /product="cadherin-24 isoform X1"
                     /protein_id="XP_008768930.1"
                     /db_xref="GeneID:498515"
                     /db_xref="RGD:1560161"
                     /translation="MWGLVRLLLAWLGGWGCMGRLAAPVPAWAGSRGHSGPTLLRTRR
                     SWVWNQFFVIEEYSGPEPVLIGKLHSDVDRGEGRTKYLLTGEGAGTVFVIDEATGNIH
                     VTKSLDREEKAQYVLLAQAVDRASNRPLEPPSEFIIKVQDINDNPPVFPLGPYHATVP
                     EMSNVGTSVIQVTAHDADDPSYGNSAKLVYTVLDGLPFFSVDPQTGVVRTAIPNMDRE
                     TQEEFLVVIQAKDMGGHMGGLSGSTTVTVTLSDVNDNPPKFPQSLYQFSVVETAGPGT
                     LVGRLKAQDPDLGDNALMAYSILDGEGSEAFSISTDSQGQDGLLTVRKPLDFETRRSY
                     TFRVEATNTLIDPAYLRRGPFKDVASVRVAVQDAPEPPAFTQATYHLVVPENKAPGTL
                     VGQISANDLDSPASPIRYSILPHSDPEHCFSIEPEDGTIRTAVRLDREARVWYNLTVL
                     ATELDSSAQSSRVQVAIQTLDENDNAPQLAEPYDLFVCDSAAPGQLIQVIRALDRDEV
                     GNSSQVSLQGPVGPDANFTVRDNRDGSASLLLPSRPAPPRQAPYLVPIELWDWGQPAL
                     SSTATVTVSVCRCQPDGSRAPCWPEAQLSPTGLSTGALLAIVTCMGTLLALVVLFVAL
                     RRQKQEALMVLEEEDVRENIITYDDEGGGEEDTEAFDITALQNPDGAAPPAAGPPVRR
                     DVLPRTRAPRQPRPPGPADVAQLLALRLREADEDPSVPPYDSVQVYGYEGRGSSCGSL
                     SSLGSGSEAGGVPGPAEPLDDWGPLFRTLAELYGAKEPPAP"
ORIGIN      
        1 cctccttccc ccgccccctc cgtctcgctc ccttgttctc gcccgggccg ctcagacctg
       61 cagcggagcc gcggcgccgg cttggatctg cttggggctg cacccccggg agccagcgac
      121 ggaggcaggc ggggcgctgc tcgtggtccc gggtccctcg gtagagccag gtgtggatcc
      181 atggggtagc ctcaacgcgt cttccccagc cagctcatgg gccacctggc cctgcccagc
      241 cttggcatcc ggggccagtg aacaagagcc ctggcaggat tacaaacatg tggggccttg
      301 taaggctcct gctggcctgg ctgggtggct ggggctgcat ggggcgcctg gcagctccag
      361 tcccagcctg ggcagggtcc cggggacact cgggtcctac actgctgcgg acccgaagga
      421 gctgggtctg gaaccagttc tttgtcattg aggaatattc tggtccagag cccgtcctta
      481 ttggcaagct gcactcagat gttgaccggg gtgagggccg caccaagtac ctgctgactg
      541 gggagggggc aggcactgta tttgtgattg atgaagccac aggcaatatc catgtgacca
      601 agagcctgga ccgagaggag aaggcacagt acgtgctgct ggcccaagct gtggaccgtg
      661 cctctaaccg gcccctggaa cccccatcag agttcatcat caaagtgcaa gacatcaatg
      721 acaatccacc tgtgtttccc cttgggccct accatgccac agtgcctgag atgtctaacg
      781 ttgggacgtc tgtaatccaa gtgactgccc acgatgccga tgaccccagc tatgggaaca
      841 gtgccaagct tgtctacacg gtgctggatg gactgccttt cttctctgtg gacccccaga
      901 ctggagtggt tcgcacagcc atccccaaca tggaccggga gacccaggag gagttcttgg
      961 tggtgattca agccaaggat atgggtggtc acatgggggg gctgtcaggc agcaccacag
     1021 taacagtcac cctcagtgat gtcaacgaca acccccccaa gttccctcag agtctatacc
     1081 agttctcagt ggtggaaaca gctggacctg gaactctggt gggccggctt aaggcccagg
     1141 acccagacct aggggataac gctctgatgg cctacagcat cttggatggg gaaggatcgg
     1201 aggccttcag catcagcaca gactcccagg gtcaggatgg gctccttact gtacggaagc
     1261 ccctggactt cgagactcgt cgctcttata ccttccgggt agaagccacc aacaccctca
     1321 tcgacccagc ctacctgcgg cgaggtccct tcaaggatgt ggcctcagta cgagtggccg
     1381 tgcaggacgc tccagagcca cctgccttca cccaggccac ctaccacctg gtagtacctg
     1441 agaacaaggc cccgggaacc ctggtgggcc agatctcagc caatgacctg gactccccgg
     1501 ccagccctat cagatactcc atcctccccc actcggatcc agagcattgc ttctccattg
     1561 agcccgaaga cggcactatc cgcacagcgg tgcgtctgga ccgagaggcc cgtgtctggt
     1621 acaacctcac cgttctcgcc acagagttgg atagctctgc gcaatcctcc cgagtgcaag
     1681 tggccatcca gacgctggat gaaaatgaca acgcccccca gctggccgag ccctatgacc
     1741 tctttgtttg tgattcggca gcccctgggc agttgattca ggtcatccgg gctttagaca
     1801 gagatgaggt tggcaacagt agccaagtct cccttcaagg tcctgtgggc cctgatgcca
     1861 actttacagt ccgggacaac cgagatggct ctgccagcct gctgctgcct tcccgacctg
     1921 ctccaccccg ccaggccccc tacctggttc ctatagaact ttgggattgg gggcagccag
     1981 ccctgagcag cactgccacc gtgactgtga gtgtgtgtcg ctgccagcct gatggctcca
     2041 gggcaccctg ctggcctgag gctcagctct cacccaccgg tctcagcact ggagccctac
     2101 ttgccattgt cacctgtatg ggcaccctcc ttgccctggt ggtgctcttt gtggccctga
     2161 ggcggcagaa gcaggaagcc ttgatggtac tggaggagga ggacgtccgg gagaacatca
     2221 tcacctatga tgatgagggt ggcggagagg aggacaccga ggcctttgac atcacagcct
     2281 tgcagaaccc ggacggagcc gctcctccag cagccggccc gcccgtacgc cgcgatgtgc
     2341 tgccgcggac ccgagcgcca cgccagccca ggccaccggg ccccgctgat gtggcgcagt
     2401 tgctggcgct gcggctgcgc gaggcggacg aggaccccag cgttcccccg tacgactccg
     2461 tgcaggtgta tggctatgag ggccggggct cctcctgcgg ctcgctcagc tccctgggct
     2521 cgggcagcga ggctggcggg gtccccggcc ccgccgagcc actggacgac tggggcccac
     2581 tcttccgcac tctggcagag ctgtatgggg ccaaggagcc cccggccccc tgaggccggc
     2641 cctggccctg ccgctgcgct gcggtggggt agcgcacaca ggccctctga gtgagcccca
     2701 cagggtccag gcaggcagcg gcaggccagg ggcccaatgt gtccctcctt ttcccctccc
     2761 tcctacctcc cactcctcag tctgtgtgtt tctccagaga tccctgtctg tgactctcca
     2821 ctgtccgggg gggttgagtt ttttaactgc ccccgactct gttctcactg tgactctgtg
     2881 gctttttgtc tcgtaattct aatcgctcag attctgtccc ccttgaccat acacatgctc
     2941 tgtctgtctc ctacccacat gtccctccct tctctttgag tccctgtgac tggctttttg
     3001 gtttgtttgt cgtgttttgt tttgtttctg ttatccatcc caaaagcaag agaatcttcc
     3061 ggccactgct gccccaccct actgcaggag atgctctgct ccagacctgc ccgcatggtt
     3121 ccatccatca ctcatggcct catcctggct ccattggctt ctagcagaag gaaggagggg
     3181 agccagccca cctcctaggg caagagcttc agccccacgt ggccacctcc ctggagctct
     3241 gcccagctgt cacagcctgc cctgggcatc ccagctctgg gcattgtctt gtgtgcttct
     3301 caggccccag aaggaaaggg agggggaggg gggaaggcag ctggggaaga gggaaaaggg
     3361 aggaaaggga ggggcctcca tctctaattt cataataaac actttatttt gtaaagtaag
     3421 a
//
