LOCUS       NM_001012748            2450 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus cadherin 20 (Cdh20), mRNA.
ACCESSION   NM_001012748 XM_344124
VERSION     NM_001012748.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2450)
  AUTHORS   Takahashi,M., Fukabori,R., Kawasaki,H., Kobayashi,K. and
            Kawakami,K.
  TITLE     The distribution of Cdh20 mRNA demarcates somatotopic subregions
            and subpopulations of spiny projection neurons in the rat
            dorsolateral striatum
  JOURNAL   J Comp Neurol 529 (16), 3655-3675 (2021)
   PUBMED   34240415
  REMARK    GeneRIF: The distribution of Cdh20 mRNA demarcates somatotopic
            subregions and subpopulations of spiny projection neurons in the
            rat dorsolateral striatum.
REFERENCE   2  (bases 1 to 2450)
  AUTHORS   Takahashi,M. and Osumi,N.
  TITLE     Expression study of cadherin7 and cadherin20 in the embryonic and
            adult rat central nervous system
  JOURNAL   BMC Dev Biol 8, 87 (2008)
   PUBMED   18801203
  REMARK    GeneRIF: Expression of cad7 and cad20 demarcates the compartments,
            boundaries, progenitor domains, specific nuclei and specific neural
            circuits during mammalian brain development.
            Publication Status: Online-Only
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AB121033.1.
            
            [WARNING] On Apr 29, 2024 this sequence was replaced by
            NM_001012748.2.
            
            On Apr 20, 2005 this sequence version replaced XM_344124.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AB121033.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760393, SAMEA5760396
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2450
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="Sprague-Dawley"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /map="13p11"
     gene            1..2450
                     /gene="Cdh20"
                     /gene_synonym="Cad20"
                     /note="cadherin 20"
                     /db_xref="GeneID:363948"
                     /db_xref="RGD:1305438"
     CDS             1..2406
                     /gene="Cdh20"
                     /gene_synonym="Cad20"
                     /codon_start=1
                     /product="cadherin-20 precursor"
                     /protein_id="NP_001012766.1"
                     /db_xref="GeneID:363948"
                     /db_xref="RGD:1305438"
                     /translation="MWTTGRMSNAKSWLGLGTSLYFWALMDLATTVLSSTPMPEVELD
                     TLFSGKPQSHQRSRRSWVWNQFFVLEEYTGTDPLYVGKLHSDMDRGDGSIKYILSGEG
                     AGIVFTIDDTTGDIHAIQRLDREERAQYTLRAQALDRRTGRPMEPESEFIIKIQDIND
                     NEPKFLDGPYVATVPEMSPVGTSVIQVTATDADDPTYGNSARVVYSILQGQPYFSVDS
                     KTGIIRTALMNMDREAKEYYEVIIQAKDMGGQLGGLAGTTTVNITLSDVNDNPPRFPQ
                     KHYQMSVLESAPVSSTVGRVFAKDLDEGINAEMKYTIVDGDGADAFDINTDPNFQVGI
                     ITVKKPLSFESKKSYTLKVEGSNPHVEMRFLNLGPFQDTTTVHIIVEDVDEPPVFEPR
                     FYFVEVPEDVTIGTTIQIISAKDPDMTNNSIRYSIDRGSDPGRFFYVDITTGALMTAR
                     PLDREEFSWHNITVLAMEMNNPSQVGSVAATIKVLDVNDNAPEFPRFYEAFICENAKA
                     GQLIQTVSAVDQDDPHNGQHFYYSLAPEAANNPNFTVRDNQDNTARILTRRSGFRQQE
                     QSVFYLPILIADSGQPVLSSTGTLTIQVCSCSDDGHVMSCSPEAYMLPVSLSRGALIA
                     ILACVFVLLVLVLLILSMRRHRKQPYIIDDDENIHENIVRYDDEGGGEEDTEAFDIAA
                     MWNPREAQAGAAPKTRQDMLPEIESLSRYVPQTCAVSSTVHSYVLAKLYEADMDLWAP
                     PFDSLQTYMFEGDGSVAGSLSSLQSATSDSEQSFDFLTDWGPRFRKLAELYGASEGPS
                     PLW"
     exon            1..246
                     /gene="Cdh20"
                     /gene_synonym="Cad20"
                     /inference="alignment:Splign:2.1.0"
     exon            247..541
                     /gene="Cdh20"
                     /gene_synonym="Cad20"
                     /inference="alignment:Splign:2.1.0"
     exon            542..661
                     /gene="Cdh20"
                     /gene_synonym="Cad20"
                     /inference="alignment:Splign:2.1.0"
     exon            662..829
                     /gene="Cdh20"
                     /gene_synonym="Cad20"
                     /inference="alignment:Splign:2.1.0"
     exon            830..1017
                     /gene="Cdh20"
                     /gene_synonym="Cad20"
                     /inference="alignment:Splign:2.1.0"
     exon            1018..1271
                     /gene="Cdh20"
                     /gene_synonym="Cad20"
                     /inference="alignment:Splign:2.1.0"
     exon            1272..1408
                     /gene="Cdh20"
                     /gene_synonym="Cad20"
                     /inference="alignment:Splign:2.1.0"
     exon            1409..1530
                     /gene="Cdh20"
                     /gene_synonym="Cad20"
                     /inference="alignment:Splign:2.1.0"
     exon            1531..1648
                     /gene="Cdh20"
                     /gene_synonym="Cad20"
                     /inference="alignment:Splign:2.1.0"
     exon            1649..1900
                     /gene="Cdh20"
                     /gene_synonym="Cad20"
                     /inference="alignment:Splign:2.1.0"
     exon            1901..2450
                     /gene="Cdh20"
                     /gene_synonym="Cad20"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgtggacta caggtagaat gagcaatgca aagagctggc ttggacttgg cacatccttg
       61 tacttctggg cactgatgga ccttgcgacc accgttctgt ccagcactcc gatgccggaa
      121 gtcgagttag atacactctt ctcaggaaag ccacagtcac atcagcggag caggaggagc
      181 tgggtttgga accaattttt tgtcctggaa gagtacactg ggactgaccc tctgtatgtc
      241 ggcaagcttc attcagacat ggacagggga gatggatcca tcaaatacat cctttcagga
      301 gaaggagcag ggatcgtgtt taccattgat gacaccactg gagacatcca tgccattcag
      361 aggcttgatc gagaggaaag agcccaatat actctaagag ctcaagccct agacaggaga
      421 acaggccggc caatggagcc agaatcagag tttattatca aaattcaaga tatcaatgac
      481 aacgagccca agttcctgga tggaccttac gttgccactg tgccagaaat gtcaccagta
      541 ggtacctctg ttatccaagt gacagccaca gatgctgatg acccaaccta tggcaacagt
      601 gcccgagttg tgtacagcat tctccagggc cagccatatt tttctgtgga ctccaaaaca
      661 ggtataatca gaacagcgct catgaacatg gacagagaag ccaaggaata ctatgaagtg
      721 attatccaag ccaaggatat ggggggtcaa cttggaggat tggctgggac cacaacagtc
      781 aacatcacac tctcagatgt caatgataac ccaccccggt ttccacagaa acattatcag
      841 atgagtgtgc tggagtccgc tcctgttagc tcgactgtgg ggagagtgtt tgccaaagac
      901 ctggacgaag gcatcaatgc agaaatgaag tacaccattg tggatggaga tggtgcagac
      961 gcttttgata tcaatacaga cccgaacttc caagttggca tcataactgt gaagaagcct
     1021 ttgagttttg aaagcaagaa aagctacacc ctgaaggtgg aaggatccaa tcctcacgta
     1081 gagatgcgtt ttctgaacct tggcccattt caggacacaa caacagtgca catcattgtg
     1141 gaggatgtgg acgagccccc tgtgtttgag ccccgctttt attttgtgga ggtgccagag
     1201 gatgtgacaa ttggaacaac catacagatc atttctgcca aggacccaga catgaccaac
     1261 aactcaatca gatactccat tgacagaggc agcgaccctg gaagattttt ctatgttgac
     1321 attacaacag gtgctctaat gactgcaaga ccactagaca gagaagagtt ttcttggcat
     1381 aatataactg ttcttgctat ggaaatgaac aacccctccc aagtgggaag tgttgctgcc
     1441 acaatcaaag tcctagatgt gaatgacaat gctccagagt ttcccagatt ctatgaagct
     1501 ttcatctgtg aaaatgccaa agcgggacag ctgatccaga cagtgagtgc tgtggatcaa
     1561 gatgaccctc acaatggtca acatttctac tacagtttgg ctcctgaggc tgctaacaac
     1621 cccaacttca ctgtcaggga caaccaagat aataccgctc gcattctgac caggaggtcc
     1681 ggcttccgac agcaggagca gagcgtcttc tacctgccca tcctcatagc agacagcggc
     1741 cagccggtcc tcagcagcac cggcacactt accattcaag tgtgcagctg cagtgacgat
     1801 ggccacgtca tgtcctgcag cccagaggca tatatgctcc cagtcagttt gagtcggggt
     1861 gccctcatcg ccatcctggc ctgcgtcttt gttctcttag tattggtgct gctcatcctg
     1921 tccatgaggc gccaccgaaa acaaccctac atcatcgacg acgacgagaa catccacgag
     1981 aacattgtgc gctatgacga cgagggggga ggcgaagagg acacagaggc cttcgacatc
     2041 gccgccatgt ggaacccgcg cgaggcgcag gcgggcgccg ccccgaagac gcggcaggac
     2101 atgctccccg agatcgagag cctctcccgc tacgtgcctc agacgtgcgc ggtcagcagc
     2161 acggtccaca gctacgtgct ggccaagctc tacgaggccg acatggacct gtgggccccg
     2221 cccttcgatt ccctgcagac ctacatgttt gagggggacg gctccgtggc cggctcgctc
     2281 agctcgcttc agtcagccac ctcggactca gagcagagct ttgatttcct cacggactgg
     2341 ggacctcgct tccggaaact ggcagaactc tacggggcgt cggaggggcc ctcgcccttg
     2401 tggtgacaga agcccggagg ccaaggtgca cccaaatcca gacgttctca
//
