LOCUS       NM_001107656            4700 bp    mRNA    linear   ROD 17-JUL-2023
DEFINITION  Rattus norvegicus cadherin 18 (Cdh18), mRNA.
ACCESSION   NM_001107656 XM_001058479 XM_008760819 XM_008775091 XM_226899
VERSION     NM_001107656.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4700)
  AUTHORS   Sverdlov VE, Dukhanina OI, Hoebee B and Rapp JP.
  TITLE     Linkage mapping of fifty-eight new rat microsatellite markers
  JOURNAL   Mamm Genome 9 (10), 816-821 (1998)
   PUBMED   9745036
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JACYVU010000066.1.
            
            [WARNING] On Apr 3, 2024 this sequence was replaced by
            NM_001107656.4.
            
            On Feb 10, 2021 this sequence version replaced NM_001107656.2.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA5760393,
                              SAMEA5760396 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            RefSeq Select criteria    :: based on conservation, expression,
                                         longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-146               JACYVU010000066.1  20984361-20984506
            147-624             JACYVU010000066.1  21142474-21142951
            625-919             JACYVU010000066.1  21209571-21209865
            920-1039            JACYVU010000066.1  21232135-21232254
            1040-1207           JACYVU010000066.1  21354516-21354683
            1208-1395           JACYVU010000066.1  21372304-21372491
            1396-1649           JACYVU010000066.1  21389641-21389894
            1650-1786           JACYVU010000066.1  21400338-21400474
            1787-1908           JACYVU010000066.1  21426150-21426271
            1909-2026           JACYVU010000066.1  21435756-21435873
            2027-2278           JACYVU010000066.1  21450650-21450901
            2279-4700           JACYVU010000066.1  21457079-21459500
FEATURES             Location/Qualifiers
     source          1..4700
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q22"
     gene            1..4700
                     /gene="Cdh18"
                     /gene_synonym="Cdh14"
                     /note="cadherin 18"
                     /db_xref="GeneID:310174"
                     /db_xref="RGD:1305430"
     exon            1..146
                     /gene="Cdh18"
                     /gene_synonym="Cdh14"
                     /inference="alignment:Splign:2.1.0"
     exon            147..624
                     /gene="Cdh18"
                     /gene_synonym="Cdh14"
                     /inference="alignment:Splign:2.1.0"
     CDS             397..2769
                     /gene="Cdh18"
                     /gene_synonym="Cdh14"
                     /note="cadherin 18, type 2; cadherin 14"
                     /codon_start=1
                     /product="cadherin-18 precursor"
                     /protein_id="NP_001101126.2"
                     /db_xref="GeneID:310174"
                     /db_xref="RGD:1305430"
                     /translation="MRITSTSCICPVLVCLCFVQRCYGTAHHSSIKVTRNQTKHTEGE
                     TEVHHRPKRGWVWNQFFVLEEHMGPDPQYVGKLHSNSDKGDGSVKYILTGEGAGTIFI
                     IDDTTGDIHSTKSLDREQKTHYVLHAQAIDRRTNKPLEPESEFIIKVQDINDNAPKFT
                     DGPYIVTVPEMSDMGTSVLQVTATDADDPTYGNSARVVYSILQGQPYFSVDPKTGVIR
                     TALHNMDREAREHYSVVIQAKDMAGQVGGLSGSTTVNITLTDVNDNPPRFPQKHYQLY
                     VPESAQVGSAVGKIKANDADTGSNADMTYSITNGDGIGVFSISTDKDTREGILSLKKP
                     LNYEKKKSYTLNIEGANTHLDFRFSHLGPFKDATMLKIIVGDVDEPPLFSMPSYVMEV
                     YENAKIGTIVGTVLAQDPDSANSLVRYFINHSTEEERFFNIDANTGTIKTSKVLDREE
                     TPWYNITVTASENDNPDLLSHVSVGIRVLDVNDNPPELAREYDIVVCENSKPGQVIHT
                     ITATDKDDFANGPRFNFFLDERLPMNPNFTLKDNEDNTASILTRRRRFSRTMQDVYYL
                     PIMISDGGIPSLSSSSTLTIRVCACERDGRVRTCHAEAFLSSAGLSTGALIAILLCVV
                     ILLAIVVLFITLRRSKKEPLIISEEDVRENVVTYDDEGGGEEDTEAFDITALRNPSAA
                     EEFKYRRDIRPEVKLTPRHQTLSTLESIDVQEFIKQRLAEADLDPSVPPYDSLQTYAY
                     EGQRSEAGSISSLDSATTQSDQDYHYLGDWGPEFKKLAELYGEIESERTT"
     exon            625..919
                     /gene="Cdh18"
                     /gene_synonym="Cdh14"
                     /inference="alignment:Splign:2.1.0"
     exon            920..1039
                     /gene="Cdh18"
                     /gene_synonym="Cdh14"
                     /inference="alignment:Splign:2.1.0"
     exon            1040..1207
                     /gene="Cdh18"
                     /gene_synonym="Cdh14"
                     /inference="alignment:Splign:2.1.0"
     exon            1208..1395
                     /gene="Cdh18"
                     /gene_synonym="Cdh14"
                     /inference="alignment:Splign:2.1.0"
     exon            1396..1649
                     /gene="Cdh18"
                     /gene_synonym="Cdh14"
                     /inference="alignment:Splign:2.1.0"
     exon            1650..1786
                     /gene="Cdh18"
                     /gene_synonym="Cdh14"
                     /inference="alignment:Splign:2.1.0"
     exon            1787..1908
                     /gene="Cdh18"
                     /gene_synonym="Cdh14"
                     /inference="alignment:Splign:2.1.0"
     exon            1909..2026
                     /gene="Cdh18"
                     /gene_synonym="Cdh14"
                     /inference="alignment:Splign:2.1.0"
     exon            2027..2278
                     /gene="Cdh18"
                     /gene_synonym="Cdh14"
                     /inference="alignment:Splign:2.1.0"
     exon            2279..4700
                     /gene="Cdh18"
                     /gene_synonym="Cdh14"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctgggagcct ggggctggag gtgcgcggag ctggagcctg ggctctccga ggaccgggag
       61 cagcagtgcc cagagctctg agaaagtacc ccctctgctt ctcataaatt aagttccttt
      121 ccaccagtta gggcaagtca gccaaggtag aaaatgatga cctgcgctaa tctacagtga
      181 caacttggga tgcaatggct gcccctgtgt ttccacttat gaataggaag taaatatggt
      241 ctgactttcc ctgatgggca gctaaatcat ggacagacta aatgacttac tttggactgt
      301 ccttccaaaa gatgttttgg cttctctctt gaatgcttac tgagcccttg taggccacga
      361 agacaagaag gactgtgaac gggaagtgat cttacaatga gaattacgag cacatcttgc
      421 atctgtccag tcctcgtgtg tctctgtttt gtgcagaggt gttatggaac tgctcaccac
      481 agctccatta aggtgaccag aaaccaaacc aaacacactg aaggggaaac tgaagtacac
      541 catcgtccca agagaggatg ggtgtggaac cagttctttg ttttagaaga acatatggga
      601 ccagacccac agtatgttgg aaaactgcac tccaactctg ataaaggcga tggctctgtc
      661 aagtacatcc ttactggaga aggagctggg actatattca tcattgacga caccactggt
      721 gacatccact caaccaaaag cctggacaga gagcagaaga ctcactatgt acttcatgcc
      781 caggctattg acagacggac gaacaagcct ctggaacctg agtctgagtt catcatcaaa
      841 gtgcaagaca tcaatgacaa tgctccgaag ttcacagacg gaccatacat cgttactgtg
      901 cctgaaatgt cagatatggg tacctctgta ctacaggtga cagctacaga tgcagatgac
      961 cccacatatg gaaacagtgc tcgagttgtt tacagcatcc tgcaaggaca accttatttc
     1021 tctgtagatc ctaaaacagg agtcattcga accgctttac acaacatgga tagagaagcc
     1081 agagagcatt actcagtggt cattcaagcc aaagacatgg ctgggcaagt tggcggactt
     1141 tctggatcca caactgtcaa cattaccttg actgatgtca atgacaaccc accacggttc
     1201 ccacagaaac actatcaact gtatgttcct gagtctgctc aagttggttc agctgttgga
     1261 aaaatcaagg caaatgatgc agacacgggc tcaaatgcag atatgaccta ctccatcact
     1321 aatggagatg gtattggagt attctctata tccactgaca aggacaccag agaaggaata
     1381 ctttccttaa agaagccact gaactatgag aaaaagaagt cttacacact caacattgag
     1441 ggagcaaata cacatctgga tttccgcttt tcccacttgg gtccatttaa ggatgccacc
     1501 atgctgaaga tcattgttgg ggatgtggat gaaccaccac tcttttctat gccttcctat
     1561 gtcatggaag tctatgaaaa tgccaagatt gggacgattg ttggcactgt cttggcacag
     1621 gatccagaca gtgctaacag cttagtaagg tatttcatca accacagtac tgaagaggag
     1681 agatttttca acattgatgc aaatactgga accattaaga catccaaagt actggataga
     1741 gaagaaacac cctggtacaa tatcacagtg actgcttcag aaaatgacaa tcctgatttg
     1801 ctgagccatg tctccgtggg tattagagtt ctggatgtca atgacaatcc acccgaactt
     1861 gccagggaat atgatattgt tgtctgtgag aattctaagc ctggtcaggt tatccacact
     1921 atcactgcca ctgataaaga tgactttgcc aatggaccaa gatttaattt ttttcttgat
     1981 gaacgcctgc ccatgaaccc aaatttcaca cttaaggaca atgaagataa cacagccagc
     2041 attctgacaa ggcggaggag atttagtcga actatgcagg atgtgtatta tctgcccatt
     2101 atgatctctg atggtggaat cccctctctc agcagcagca gcaccctcac catcagggtt
     2161 tgtgcatgcg agagagatgg gcgcgttcgg acctgccatg cagaagcctt cctgtcctcc
     2221 gctggtttga gcacaggagc cctaatcgcc attcttctct gtgttgtcat tcttctagcc
     2281 attgtggtcc tttttatcac cttgaggcgc agcaagaaag agcccttgat catttcagag
     2341 gaggatgtgc gagagaacgt ggtgacttat gatgacgagg gaggaggcga ggaagacact
     2401 gaggccttcg acatcacagc tttgagaaat ccttccgctg cagaggagtt caagtaccgc
     2461 agagacattc ggcctgaagt gaagctcact cctagacatc agacattgtc caccctggag
     2521 agcatagacg ttcaggagtt tattaagcaa agactggcag aagcagacct ggaccccagt
     2581 gtaccccctt atgactctct tcagacttat gcctacgagg gtcagaggtc agaagctgga
     2641 tctatcagct cactggactc tgcaaccacg caatcagacc aggattatca ctaccttgga
     2701 gactgggggc ctgagtttaa aaagttagct gaactctatg gagaaataga atctgaaaga
     2761 acaacttagg gggttaattc tttctcttct tttcttttct ttcttttttt cttttatttt
     2821 tttttttttt tttctttttt ttttcttttt ggagctatgt agaatttgct tcctgaccaa
     2881 gtggagatat gacctcaata tgacaaggaa gtcgagcaga aacagtactt ggaactgagc
     2941 aagctgtaca cagctcctgt agaaacaagt gtccttttta tgatcaaaaa atgggttatt
     3001 taattggaag aaagtcgact attaaataat aataataatg ataacagagg aaaaagctat
     3061 tgtttcttgt atatattttc aaacgctcaa taaagtctat ggtactgttt aattaagaat
     3121 aactgaacaa agccaaacag tggatattta tttcatgatg ttgtgactta ttttttccaa
     3181 agcaaaatta aacaaaggag gtttaaaatc actgtcaggc ccttgcactg aacatggaca
     3241 cgtacagagg tagtcacagc ctcctttcct gttttctggg tagaacttcc agacccctag
     3301 tctgttactg taacagatct cattatcctg ttcctttgct gaaaatccat gaagtacccc
     3361 ttaaattcca ggcaactctg acatggactt gaatatcccg ttttcctcag ccctccccac
     3421 ttcttttctc cacacaaagc tgatggagca cggggaattg ctgcctgcac tatgacatat
     3481 gcaacttcag tgcgccggac atgcactgtt ctcagcacgg agacaaagtt ctctgtccta
     3541 cccatagtac gttctgttaa caggagatgc ccgattcaaa ttgatagaat gaaagaactc
     3601 tgatcatcag atacgtcagg gaagtttcga tttaaactct aaacctcatc atgcataaaa
     3661 cattgaaacc tttctttttc tgtttttatt ccctttcatt ttaaaaagta catttctacc
     3721 ttaaattggt tgtctttttt tttcctgacc cgtttatact tcaccatggt tcacttatat
     3781 ccattcgaga tagtcatccg tcatgtgtat gtcgcttagt ttgatcacgt tgtagcattt
     3841 cttgttcttg agccaccttc ttccttctca gcttcccggt tcatccttgc acatgtggta
     3901 tttacaagag aatacatagt agcaggccaa agaagtgaag gaatcactca gctgaccctg
     3961 aagagatccc aagggtctct gaatttcagg gtccccaact gcagtatgaa aatggtaatg
     4021 attttcctgc ctacctcaca gggctgttgt gagggaaaag caggcctggt agaactcttt
     4081 gacaagtgca acgtattttg cctcctgaag atttgcacat acctaaatga ccaatactat
     4141 tagctgcaac agataggcat acacgaactt cactagacaa tgatcttatg atgagaaaat
     4201 tttatgaaac catcaagatt aaaactactg ttaacatcaa tatgtaatat acaatactaa
     4261 taatttaata ttttccaaaa tctcattttc tttataactt cttggggctt tttaaacttt
     4321 tatttaagga atattttatt cccttgttct gggggcttta tgtaaaaaag aaatagaaca
     4381 ttaaggtact acactttgaa attacctcgt ctatgtattc ctggttaatt gggattttta
     4441 aacacataag gtataaacta tttgaaggaa tatatgtttt tcatttaatc tttaaattta
     4501 ttatattata atgtccccaa atgttctatg gtgtttcttg attccaccct tgtgcaaatt
     4561 ttgggactgt gcctctgtct gaatctgcct tgtgctgtct tattccagtt ctgaggtttg
     4621 ggaactgagt ttcatttgaa taactctcag tttgtgttct aagcctgagg aataaagtgg
     4681 aatccaagcc ttttacaaca
//
