LOCUS       NM_207613               2736 bp    mRNA    linear   ROD 23-MAR-2023
DEFINITION  Rattus norvegicus cadherin 15 (Cdh15), mRNA.
ACCESSION   NM_207613 XM_341710
VERSION     NM_207613.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2736)
  AUTHORS   Kodama H, Kumai Y, Nishimoto K, Sanuki T and Yumoto E.
  TITLE     Modulation of satellite cells activity and MyoD in rat
            thyroarytenoid muscle after reinnervation
  JOURNAL   Laryngoscope 125 (7), E245-E251 (2015)
   PUBMED   25809587
  REMARK    GeneRIF: NMJ formation following reinnervation might prompt
            recovery of M-cadherin and MyoD mRNA expression to the quiescent
            level of SCs
REFERENCE   2  (bases 1 to 2736)
  AUTHORS   Ishido M, Uda M, Masuhara M and Kami K.
  TITLE     Alterations of M-cadherin, neural cell adhesion molecule and
            beta-catenin expression in satellite cells during overload-induced
            skeletal muscle hypertrophy
  JOURNAL   Acta Physiol (Oxf) 187 (3), 407-418 (2006)
   PUBMED   16776666
  REMARK    GeneRIF: Results suggested that the expressions of NCAM, M-cadherin
            and beta-catenin in skeletal muscle satellite cells may be
            controlled by distinct regulatory mechanisms during functional
            overload and muscle hypertrophy.
REFERENCE   3  (bases 1 to 2736)
  AUTHORS   Tomi M, Abukawa H, Nagai Y, Hata T, Takanaga H, Ohtsuki S, Terasaki
            T and Hosoya K.
  TITLE     Retinal selectivity of gene expression in rat retinal versus brain
            capillary endothelial cell lines by differential display analysis
  JOURNAL   Mol Vis 10, 537-543 (2004)
   PUBMED   15316464
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 2736)
  AUTHORS   Volonte D, Peoples AJ and Galbiati F.
  TITLE     Modulation of myoblast fusion by caveolin-3 in dystrophic skeletal
            muscle cells: implications for Duchenne muscular dystrophy and
            limb-girdle muscular dystrophy-1C
  JOURNAL   Mol Biol Cell 14 (10), 4075-4088 (2003)
   PUBMED   14517320
REFERENCE   5  (bases 1 to 2736)
  AUTHORS   Cifuentes-Diaz C, Goudou D, Padilla F, Facchinetti P, Nicolet M,
            Mege RM and Rieger F.
  TITLE     M-cadherin distribution in the mouse adult neuromuscular system
            suggests a role in muscle innervation
  JOURNAL   Eur J Neurosci 8 (8), 1666-1676 (1996)
   PUBMED   8921257
REFERENCE   6  (bases 1 to 2736)
  AUTHORS   Donalies M, Cramer M, Ringwald M and Starzinski-Powitz A.
  TITLE     Expression of M-cadherin, a member of the cadherin multigene
            family, correlates with differentiation of skeletal muscle cells
  JOURNAL   Proc Natl Acad Sci U S A 88 (18), 8024-8028 (1991)
   PUBMED   1840697
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AB176538.1.
            
            On Aug 30, 2004 this sequence version replaced XM_341710.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AB176538.1, SRR8487231.57896.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760384, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2736
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /map="19q12"
     gene            1..2736
                     /gene="Cdh15"
                     /note="cadherin 15"
                     /db_xref="GeneID:361432"
                     /db_xref="RGD:1303000"
     exon            1..58
                     /gene="Cdh15"
                     /inference="alignment:Splign:2.1.0"
     CDS             17..2371
                     /gene="Cdh15"
                     /note="M-cadherin"
                     /codon_start=1
                     /product="cadherin-15 precursor"
                     /protein_id="NP_997496.1"
                     /db_xref="GeneID:361432"
                     /db_xref="RGD:1303000"
                     /translation="MSSALLFALGLLAQSLGLSWAVPEPEPSTLYPWRRASAPGRVRR
                     AWVIPPISVSENHKRLPYPLVQIKSDKQQLGSVIYSIQGPGVDEEPRNVFSIDKFTGR
                     VYLNATLDREKTDRFRLRAFALDLGGSTLEDPTDLEIVVVDQNDNRPVFLQDVFRGRI
                     LEGAIPGTFVTRAEATDADDPETDNAALRFSILEQGSPELFSIDEHTGEIRTVQVGLD
                     REVVAVYNLTLQVADMSGDGLTATASAIISVDDVNDNAPEFTKDEFFMEAAEAVSGVD
                     VGRLEVEDKDLPGSPNWVARFTILEGDPDGQFKIYTDPKTNEGVLSVVKPLDYESREQ
                     YELRVSVQNEAPLQTAAPRAQRGQTRVSVWVQDTNEAPVFPENPLRTSIAEGAPPGTS
                     VATFSARDPDTEQLQRISYSKDYDPEDWLQVDRATGRIQTQRVLSPASPFLKDGWYRA
                     IILALDNAMPPSTATGTLSIEILEVNDHAPALAPPLSGSLCSEPDQGPGLLLGATDED
                     LPPHGAPFHFQLNPRVPDLGRNWSLSQINVSHARLRLRHQVSEGLHRLSLLLQDSGEP
                     PQQREQTLNVTVCRCGLDGTCLPGAAALQGGGVGVGLGALVIVLASTVVLLVLILLAA
                     LRTRFRGQSRSKSLLHGLQEDLRDNILNYDEQGGGEEDQDAYDINQLRHPVEPKATSR
                     SLGRPPLRRDAPFSYVPQPHRVLPTSPSDIANFISDGLEAADSDPSVPPYDTALIYDY
                     EGDGSVAGTLSSILSSQGDEDQDYDYLRDWGPRFARLADMYGHP"
     exon            59..214
                     /gene="Cdh15"
                     /inference="alignment:Splign:2.1.0"
     exon            215..370
                     /gene="Cdh15"
                     /inference="alignment:Splign:2.1.0"
     exon            371..515
                     /gene="Cdh15"
                     /inference="alignment:Splign:2.1.0"
     exon            516..676
                     /gene="Cdh15"
                     /inference="alignment:Splign:2.1.0"
     exon            677..805
                     /gene="Cdh15"
                     /inference="alignment:Splign:2.1.0"
     exon            806..991
                     /gene="Cdh15"
                     /inference="alignment:Splign:2.1.0"
     exon            992..1245
                     /gene="Cdh15"
                     /inference="alignment:Splign:2.1.0"
     exon            1246..1388
                     /gene="Cdh15"
                     /inference="alignment:Splign:2.1.0"
     exon            1389..1628
                     /gene="Cdh15"
                     /inference="alignment:Splign:2.1.0"
     exon            1629..1868
                     /gene="Cdh15"
                     /inference="alignment:Splign:2.1.0"
     exon            1869..2005
                     /gene="Cdh15"
                     /inference="alignment:Splign:2.1.0"
     exon            2006..2170
                     /gene="Cdh15"
                     /inference="alignment:Splign:2.1.0"
     exon            2171..2722
                     /gene="Cdh15"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tcccgccgct gcccccatga gttctgctct gctcttcgcc ctcgggctgc ttgcccagag
       61 ccttggcctc tcctgggcag tccctgagcc tgaacccagc accctgtacc cctggcgccg
      121 ggcatcagcc ccaggccgtg tgcggagagc ctgggtcatc ccacccatca gtgtgtctga
      181 gaaccacaaa cgcctcccct acccacttgt gcagatcaag tctgacaaac aacagctagg
      241 cagtgtcatc tacagtatcc agggtcccgg tgtggacgag gagccccgaa acgtcttctc
      301 catcgacaag ttcactggga gggtgtacct caatgccact ctggaccgtg agaagacgga
      361 ccgcttcagg ctgagggcct ttgccctgga cttgggtggc tctaccctgg aggaccccac
      421 ggacctggag atcgtcgtgg tggatcaaaa tgacaaccgg ccagtcttcc tacaggatgt
      481 gttcagaggc cgcatcctgg agggtgccat cccaggcacc ttcgtaacca gggctgaggc
      541 cacagatgcc gacgatccgg agacagacaa tgcggccctc aggttctcta tcctggagca
      601 gggcagccct gagttgttca gcattgacga gcacactgga gagatccgca cagtgcaagt
      661 ggggctggac cgtgaggtgg tggctgtgta caacctgacc ttgcaggtgg cagacatgtc
      721 cggagatggc ctcaccgcca cagcctcggc catcatctcc gtagatgacg tcaacgacaa
      781 tgcccccgag ttcaccaagg atgagttctt tatggaggct gcagaggctg tcagtggagt
      841 ggacgtggga cggcttgagg tagaagacaa ggatctgccc ggttccccca actgggtggc
      901 caggttcacc atcctggaag gcgatcctga cgggcagttc aagatctata cggaccccaa
      961 gaccaatgaa ggtgtgctgt ccgtggtcaa gcccctggat tatgagagcc gtgagcagta
     1021 tgagctcaga gtgtctgtac agaacgaggc ccctctgcag acagctgccc cccgggccca
     1081 gcggggccag accagggtca gtgtgtgggt tcaggacacc aacgaggctc cagtgtttcc
     1141 agagaaccca ctgaggacga gcatagctga aggagccccg ccaggcacct ctgtggccac
     1201 cttctctgcc cgagaccctg acacggaaca gctgcagaga atcagctact ctaaggacta
     1261 cgacccagaa gactggctgc aagtggaccg ggccacaggc aggattcaga cccagcgagt
     1321 gttgagccct gcctcaccct ttttaaagga cggctggtac agggccatca tcctagccct
     1381 ggacaacgcc atgcctccca gcacagccac aggcaccctg tccattgaga tcttagaagt
     1441 caacgaccat gcccctgcac tggcccctcc tctgtctggc agcttgtgca gtgaaccgga
     1501 ccaaggcccc ggtctcctct tgggtgccac ggatgaggac ctgcccccgc acggggcccc
     1561 cttccacttc cagctgaacc ccagggtacc agatctcggc cggaactgga gcctcagcca
     1621 gattaacgtg agccatgcac gcttgcggct ccgacaccag gtctctgagg gcctgcatcg
     1681 cctgagcctg ctgctccagg actctgggga gccgccccag cagcgagagc aaacgctgaa
     1741 cgttaccgtg tgtcgctgtg ggttggatgg cacctgcctg cccggggccg ctgcgctgca
     1801 aggaggaggt gtaggcgtcg gcttgggcgc actggtcatt gtgctggcca gcaccgtggt
     1861 cctactggtt ctcatcctgc ttgctgcgct ccgcacacgg ttccgggggc agtctcggag
     1921 caagagtctg ttgcatgggc ttcaggagga tcttcgggac aacattctta actacgatga
     1981 acaaggaggc ggggaggagg accaggatgc ctacgacata aaccagctgc gccacccagt
     2041 ggaaccgaag gccaccagcc gctctttggg ccggccaccc ctgcgcaggg atgcaccctt
     2101 cagctatgtg ccacagccac atcgagtact tcctaccagc ccgtctgaca tcgccaactt
     2161 catcagtgac ggcttggagg ctgcggacag cgaccccagc gtgcctccct atgacacagc
     2221 tctcatctat gactacgagg gagatggctc tgtggcaggg accctgagct ccatcctgtc
     2281 cagccaggga gatgaagacc aggactatga ctatctccgg gactggggcc cccgctttgc
     2341 tcggctggcg gacatgtatg ggcatccgtg agagccagag ccaggggcag acgtcctgtg
     2401 tggacacgcc cactcggccc aaacaaggag gctctctcct gggacatgca cccagaaatc
     2461 ctatgagggt cagcagcacg acccatcttt ggctccatgg cagataaact cactgaaggt
     2521 catctgtgtg agctccaggg gaggactgag tcctgtatgg gctaggcagc ggagggagag
     2581 cgctctccct ctggagtgca gaagccacct tcaatcaccc tgctagggtt catcccatct
     2641 ttgtgtccca gttgtgactc tcacctctgt atgaaagcag gcatctaagg agcagattgg
     2701 aattaaaaac aactgttcag tgaaaaaaaa aaaaaa
//
