LOCUS       XM_017591412            8912 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus cadherin 12 (Cdh12), mRNA.
ACCESSION   XM_017591412
VERSION     XM_017591412.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017591412.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017591412.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8912
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..8912
                     /gene="Cdh12"
                     /note="cadherin 12; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 4 ESTs, 48 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 27 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:301887"
                     /db_xref="RGD:1566350"
     CDS             1088..3472
                     /gene="Cdh12"
                     /codon_start=1
                     /product="cadherin-12"
                     /protein_id="XP_017446901.1"
                     /db_xref="GeneID:301887"
                     /db_xref="RGD:1566350"
                     /translation="MLTRNSLYLLLWILFDGGLLTPLQPQPQQTLATEPKDNVIHLLG
                     RRSHFQRVKRGWVWNQFFVLEEYMGSEPQYVGKLHSDLDKGEGTVKYTLSGDGAGTVF
                     TIDETTGDIHAIRSLDREEKPFYTLRAQAVDIETRKPLEPESEFIIKVQDINDNEPKF
                     LDGPYVASVPEMSPVGAYVLQVKATDADDPTYGNSARVVYSILQGQPYFSIDPKTGVI
                     RTALPNMDREVKEQYQVLIQAKDMGGQLGGLAGTTIVNITLTDVNDNPPRFPKSIFHL
                     KVPESSPVGSAIGRIRAVDPDFGKNAEIEYNIVPGDGGNLFDIVTDEDTQEGIIKLKK
                     PLDFETKKAYTFKVEASNLHLDHRFHSAGPFKDTATVKISVLDVDEPPVFSKPLYTME
                     VYEDTPVGTIIGAVTAQDLDVGSSAVRYFIDWKSDGDSYFTIDGTEGTIATNELLDRE
                     NTAQYNFSIIASKVSNPSLTSKVNILINVLDVNEFPPEISVPYETAVCENAKPGQIIQ
                     IVGAVDRDLSPAGQQFSFRLAPEAVIKPNFTVHDFRNNTAGIETRRNGYSRRQQELYF
                     LPIVIEDSSYPVQSSTNTMTIRVCRCDSDGTILSCNVEAIFLPVGLSTGALIAILLCI
                     VILLAIVVLYVALRRQKKKDTLMTSKEDIRDNVIHYDDEGGGEEDTQAFDIGALRNPK
                     VIEENKIRRDIKPDSFCLPRQRPQVEDNTDIRDFIHQRLQENDADPAAPPYDSLATYA
                     YEGNGSVAESLSSIDSLTSEADQDYDYLSDWGPRFKVLADMFGEEESYNPDNVT"
ORIGIN      
        1 atcttccaca cactcgccca ttttcaaaac acagcctcag gtttaaagcc aggtttaaag
       61 tcactttcgc atctcctaaa tgcaccgttc tgcccagcta gtctaataag tcttccttga
      121 gaggttcagc tttccattca ttcaaagaat tttacaatga acggtggggg ttttgggggg
      181 agaacatata agatgcattt caaatatagg attcaattac ttttcacaac tcagagacgt
      241 gtcaaaggca cgctgtgttt tgttttgagg gcggggagat gacagggaag gaatcctgag
      301 cccccattgg ctcatggcta agcactgcag ctgagcctcc ccaacacccc caccccctcc
      361 gccctgagag cattattgat ctgaagggta aatgtggagg gagccacaga gagggtccag
      421 gcgtttctga gaagagaggc tgactcttcc aggaacaaag tggtgtctgc tggctgcctg
      481 gcctgggaat cttctgtgaa ttaaagggga caaaatgcgc ggtcgtggtt cgctacagtg
      541 attgagaaga gggaagagac agagaggcag agggagaagt cgcaccttgg agcgaggctg
      601 tgttgtttca tcccgctgct gccctttctc cgttgctgtt cctgtgctgc gtctgctctc
      661 agccatcagc acaattacct gactggtcct ttgtacggag gattgtaatg acgttggaaa
      721 acaagcgaag tctggggtat tgagagaatg gtagcctttt taaagacagc gaggagcttg
      781 gcataaacag aggcaaagga gaagagcacg ctgccactct gtgggtgttg attgaaaact
      841 tcgatctcct cacccattta tggttgatct aaaggatttc tcacttgatc accgagagta
      901 tttcaattaa ggtctcctta gatggaatgt cataaaccag aaacttccaa agcatcaatg
      961 tgtgaattac tgtcactgca ctaaaacaga aagctcagtg gtcacagaca cttcaaccct
     1021 ggatcccacc attctacatt aagtactgga gtatttatta ctcttctgta gaagaaagac
     1081 tttgccaatg cttacaagga actctttata cctgcttctc tggatcctgt ttgatggagg
     1141 tctcctaaca ccactgcagc cacagccaca acaaacttta gccacagaac caaaagacaa
     1201 tgttatccac cttctgggga gacggtccca tttccaacga gttaaacgtg gctgggtatg
     1261 gaatcagttt tttgtgctgg aagagtacat gggatccgaa cctcaatatg tgggaaagtt
     1321 acactctgac ctggacaagg gagaaggcac tgttaaatac acgctctctg gagatggtgc
     1381 tggcactgtt ttcacgattg atgaaactac aggagacatt catgcaataa gaagcctgga
     1441 tagagaagaa aaacctttct acactcttcg tgctcaggca gtggacatag aaaccaggaa
     1501 gccactggag cccgaatcag agttcatcat taaagtgcag gatattaacg ataatgagcc
     1561 aaagtttttg gatggaccat atgttgctag tgttccagaa atgtctcctg tgggtgcata
     1621 tgtgctacag gtcaaggcca cagatgcaga tgaccccacc tatggaaaca gtgccagagt
     1681 tgtttacagc atccttcagg ggcagcctta tttctccatt gatcccaaaa caggtgtcat
     1741 tagaacagca ttgccaaaca tggacagaga agtcaaggag cagtaccagg tcctcattca
     1801 agcgaaggac atgggaggac agctcggagg actcgctgga actaccattg tcaacatcac
     1861 ccttactgat gtcaatgaca acccacctcg attcccaaaa agcatcttcc atctaaaagt
     1921 tcccgagtcc tcccctgttg gctcagctat tggaagaata agagcagtag atcctgattt
     1981 tggaaaaaat gcagaaattg aatacaacat tgtcccagga gatgggggaa atttgtttga
     2041 cattgtcaca gatgaggata cacaagaagg aatcatcaaa ttgaaaaagc cattagattt
     2101 tgaaacaaag aaggcatata cttttaaagt agaggcctcc aaccttcacc ttgaccaccg
     2161 ctttcactca gctgggccat ttaaagatac tgctacggta aaaataagcg tgctggatgt
     2221 ggacgagccg ccagtgttca gcaagccact ttacaccatg gaggtttatg aagacactcc
     2281 tgtggggacc atcatcggag ctgtcacagc acaagacctt gatgtgggca gtagtgctgt
     2341 taggtacttc atagattgga agagtgatgg ggacagctac ttcacaatag atggaacgga
     2401 aggaaccatc gccactaatg aattactaga cagagagaac acagcacagt ataatttctc
     2461 aataattgca agtaaagtta gtaacccatc attaactagc aaagttaata tattaattaa
     2521 tgtcctagat gtcaatgaat ttccgccaga aatatctgtg ccatatgaga cagctgtgtg
     2581 tgaaaatgcc aaaccaggac agatcattca gatagtcggt gctgtagatc gagatctctc
     2641 acctgctggg cagcaattct cctttagatt agcaccagaa gctgtcatca aaccaaattt
     2701 tacagttcat gacttcagaa acaacacagc tggaatcgaa acccggagaa atggctacag
     2761 ccgcaggcaa caagaattgt atttccttcc tattgttata gaagacagca gttaccctgt
     2821 ccaaagcagc acgaatacaa tgacaattcg tgtttgtaga tgtgactctg atggaaccat
     2881 cctgtcttgc aacgtggaag caatttttct acctgtagga cttagcaccg gagctttgat
     2941 tgcaatccta ctatgcattg ttatactctt agctattgtt gtgctgtatg tagcactgag
     3001 gaggcagaag aagaaagaca cccttatgac ctccaaagaa gacatcagag acaatgttat
     3061 ccattatgat gatgaaggag gtggggagga ggacacccaa gcctttgaca ttggggctct
     3121 gagaaatccg aaggtgatcg aagagaacaa aattcgcaga gatataaaac cagactcctt
     3181 ctgtttacct cgtcagagac cacaagtgga agacaacaca gacataaggg attttattca
     3241 ccaaaggcta caggaaaatg atgcagatcc agctgcaccc ccatatgatt ccttggccac
     3301 ttatgcttat gaggggaatg ggtcagtggc tgagtcactc agctccatag actctctcac
     3361 ctcagaggct gaccaggact atgattatct atcagactgg ggaccccgct ttaaggtctt
     3421 ggcagacatg tttggagaag aagagagtta caaccctgac aatgttacct aggggagaag
     3481 gaaaggctga tacatatcta aaggagaaag ttttgagaaa aataacacaa attacacaca
     3541 cacacacaca cacacacaca aacacacaca cacacagatt ttgcaggaca agactttttt
     3601 gattatccag tttctaacaa gttgctctat ttatcatatt gtcattttgg tttactctgt
     3661 agacaaaaga taaatcttat aatatgtact tgctttgttc tgttttgtta tttgggaaac
     3721 ccatcgagat gagctcaggc ctattaaatg caattcactg acatgacaac ctagaatgaa
     3781 gatagctatg tggcgtcaca gtggaagagt gtgcgatttt tcttaattcc actaaagtgc
     3841 ctattgaaac tcttatcatt atagtggtgt tcataacact ctgctgtgat ggctttgcag
     3901 gagtcagaaa taagaaggaa caaagcagac agtgtctcta tgtcaaggag caatagtgac
     3961 aagctgattc tcatttcttt caagaacaga gaagaataat tcccaagctc catcttctta
     4021 tacggcaatg cttttccttt tgtaaactgt aaactaaaaa caatgctttt actattcttt
     4081 cagaaactgg aataaaagag acattattaa attcaatatg taagttatga attctgagag
     4141 aaatgcttga gtcatagcat tagttcatgt aaacaatgtt aattaagctg ttagtttttc
     4201 caaaataact aaataaactt atacagaagg aaataaaaag aatccctctt tataaagaga
     4261 ggcctcaggg ctcaaattcc aacatcaagt caatatcggt ttgtttaatt ctatactggc
     4321 gtatagacat tgttttttaa caaatcattg agtcatttaa gctttcagtc atagacaaaa
     4381 tttcagcttg tgtttctgct gaattttggg acaggaaata tgctattaat ttaaccatga
     4441 gaaaaattta acattgtgat tctcagagtt tctctctgag aatctctagt ggtaatttga
     4501 tgaatgattc aaacaaaata catatcaaat attgcaattt ataatgagca tatatgttta
     4561 ttctatacta ctgaacaaat aagtcaggga acctcaaaaa taaaaccaat gactaaatcc
     4621 caaagggagc aaaacttcaa tgccaggcag ctgattcact ttctctcatg atgtgaattt
     4681 taactttgtg aagtcagtta ttatatcagc ccagcgtcac ctctttatta tctcatttac
     4741 acaaaccctc atggaaatta ctcctcataa ctctttaaat aaaacttctc cagttcatgg
     4801 aaatgcctaa gaaatgatgg aatttgtgac tatattagta atatacatag ttcaaatcaa
     4861 ttccatttgg attaaaaatc atttagagat tcacaggata caacacttac aaatcaacca
     4921 taaagtaacg atgtagttaa aacaattaac aacttttacc tataggttgg aaaaattaaa
     4981 gtgaaagagt tgtttatcac atatggatag tatctggttt tatgataaat ttctgtgaat
     5041 atcattatta tttgtgaggc tatgaagata aaaactcaca ctataaaatc taagaaattt
     5101 acaaaattaa acaacttaat tttaggcata ttctaaaatg catattttaa attacttatt
     5161 gtgtggaaat atgcgccctg tttctttgtc caccattttg tagactgttt tctccctttt
     5221 ggaatgggag atttaacctt cgtttttcag tcagtcctcc ataattctcg tttcaatttt
     5281 catgtaaaaa acaattatat tcagtatttt acatttgaga aaaataactg ttttataaat
     5341 cttagaattg ccatgctaga gaagaaaaat ttgataagac ttgtttttta atctcactat
     5401 gtatggagaa tgtcttcttg aagaaggtta atattcaaga ccacacccta ttacaatctg
     5461 actcttgtca aagactatta cacctgatat gttgacagga aagaaaatgg ccttttcgag
     5521 aagttgctaa gcagaagcca tgatgacctg aagatttgag aggcagatgg cttcaatcac
     5581 acgcctaaga agatagaaaa atatgcaatg tgtggctctt aggtctcacc acactcatat
     5641 cttcgtaatt tcctacatta cttcattagc tcaaaagaaa tgatcataga aaaagtggtt
     5701 ttaaacagta gcagtttata tccacagctc tggtggcagg tttcctctga ccatcttccc
     5761 ctcttcatgg agaagaccac attttttcac cactgggtct cattttgtgc ttgtttctgt
     5821 ttctcttctc acaagggcac tctttgtatg agagcagtat cttcccagag gacctctatt
     5881 taccttgttt aataataatg gccttaccac caaatcctat ttgaactggg actacagcat
     5941 gtggattcat gcaatcccaa tctgaagata ctatcaatgt ttattttcta aatagcatct
     6001 cacttacaag aaccaataaa ggaaacaaac ataaacaagc agaatgttaa aaaataatat
     6061 atgatgtgga aaggagatcc tttggtgctt ataattagag gaactatgat agctttaggc
     6121 tactgaaagg actaagccca gtatttcaat acctgtaata ccttgggatg tttttcattc
     6181 ataagacagg tgttgaccgt cattcaagca ttaagcaata taaaaatgtt taaaatttgt
     6241 atgaatgatt tagctataaa caaacagcaa ttttgttatt ggcttgcatg tctatcttta
     6301 tagagctaca tacatatgta catatatata acttatatgt tgccttcaat gctactcaaa
     6361 gaaatgtata gtcagcatcc aaaaagtgaa gcagtgttca ttgacgtact agaaatgatc
     6421 tgtgtatgtt gaactttaac ccgttttgac tcaaaatgtc ctatggatca aattccttgc
     6481 ctttctttta ttttctttag taaaaccagt ttcatatatt cagtgttgtg gacaattaat
     6541 ctgaaatttt cttgtcatta aattacagca atggttgaaa tatatcaaat agcttaccta
     6601 caggctatgc taatttaaac atgcatagta catcattata agtcgtagta cataaatttt
     6661 tgaatcatgt agggatttga ctgatctttt atcaaaatca ctagttctac ttagaaaacc
     6721 ccacgactac ttttcatcaa tatacctgaa tattcttctg tgaaatcaag agaaaaagaa
     6781 gtgtacagga tgagagaaaa atgatcctaa attagatata gtgtgaggat gttctcttcc
     6841 cttaaatatt atgctaaaat ttcaatacct gtagagaata tgggatcggt atgcaacacc
     6901 atgatgcagt aattaatgtg cacaagctct gggttccctc ccagggccac aaatatagaa
     6961 aaataatagt aatgatgatg tgataatgat aaacaatgta atgcagatgt aaataagaaa
     7021 acaaggtatt taagtggatc cctgattaaa cctataccta aaaacagagg tgttttatat
     7081 tagtagcctc actatgttac cagcaaacag actgattgta tgaaagagag gattatttac
     7141 ataagaactt ctgctgaacc gtttttctcc ttaacctctt aaacctgcta gctaggctag
     7201 ccctccaaaa tgtattcaga accattgttt cctcagtacc ttaaaagcat tttgagagga
     7261 agggaaattg cttagcctta aaactaacct gctgctcttc aagatgatct gtgttcattt
     7321 ccagaactta catgaaaatg tctcacagct gtcattaagt cccacaccag gggatctgat
     7381 atccacttct gagattattt tacatatgca gatatcaaca tgtggataaa cacatatgca
     7441 cacgactaaa attaaaaaaa acaatcttgg aaaagttatt ttctctcatg tcctatcata
     7501 aattcactgg tgaaatagaa ggatgctttt atccatcatt aatcaaagga cacacagcat
     7561 tgtgtatggg gctattaatc aatgtcctac tctcagtgtt aagaagcttc gtattaagtc
     7621 agaatacttt tttttgtcat tctcatgatt caatactcat tcaaactttt agtacagagg
     7681 gttggtactc tgtgaagttt tcctttattc tttctggtag attttgtgtt ttgtctttta
     7741 tgtaatttta attcttgttt ttttgcatat tttgtgttaa taataaattg tgttattttt
     7801 tacatttcat tttcactata tataatatat gtatatatat gtattatatg ttttgtgatg
     7861 atactctcat ctatgtcttt tagttataat tatcttcttt acaagaattt tctgttcaat
     7921 tttcaggtat attttgttat atctatgttc tgtttgtttt tgttctattt aactatccgt
     7981 accatatgag ttttattttg agatccttac tgttttaatt ctagctactt ataaaattgt
     8041 atattcattt ttctttccaa gttggatggg aaaaccttgt cgagaaaaaa aatcatatta
     8101 tgttagactt tccttaaaac atatcttcag ctttattcct tatttcaatt atgtgctatg
     8161 ctcaaaatat ctaggttata aagtattgga ttcccctgtg acaatctaag ctaatagact
     8221 tgagacttct ctgtttcaaa acccactgcc tatgttcaac gtcatctcac gattggacca
     8281 ttagccttct actcagatac tgcaaatgtc tgagtgtact atggaatatg tgacacttgg
     8341 cttagtgtca tcataaaatc atcgacagac acacacacat ccatgtatat gtgatatgca
     8401 attgtataaa gcattgtttt gtaaaacaca ttttttatca tttaaactgg taccattgta
     8461 gtctaccaca aaatagaggt acacacaaat ataaacaaag tctggaaaac attctgattt
     8521 tctgaccttt ttgacaagca cttcgtctgt tgtattagaa caactgcatt gaacaaattg
     8581 ttcctgttta tctatgtatg cataatacac atgtgactga ctatatgtaa gctgatattt
     8641 actcttgtga aataccactg aatttcttca ttgatttttc tcagaatttc tagtgtcatg
     8701 gattttacag caatcaatct gattggcaag tttattaaag gttcttgaaa ttacctagga
     8761 ttataagttc attctcatct gtatagcttt attaaaagcg aagaaatatg gttcaaaaaa
     8821 ttcccacaca acttgattaa gagaaagaaa gaataaacaa gggataaaat ccgttttagt
     8881 gtgaagacat aaataaatat aatttcaata tc
//
