LOCUS       NM_001168631            3169 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus cadherin 10 (Cdh10), mRNA.
ACCESSION   NM_001168631 XM_342202
VERSION     NM_001168631.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3169)
  AUTHORS   Smith,K.R., Jones,K.A., Kopeikina,K.J., Burette,A.C., Copits,B.A.,
            Yoon,S., Forrest,M.P., Fawcett-Patel,J.M., Hanley,J.G.,
            Weinberg,R.J., Swanson,G.T. and Penzes,P.
  TITLE     Cadherin-10 Maintains Excitatory/Inhibitory Ratio through
            Interactions with Synaptic Proteins
  JOURNAL   J Neurosci 37 (46), 11127-11139 (2017)
   PUBMED   29030434
  REMARK    GeneRIF: Cadherin-10 forms nanoscale puncta at excitatory and
            inhibitory synapses in neuronal dendrites.
REFERENCE   2  (bases 1 to 3169)
  AUTHORS   Johnson,K.J., Patel,S.R. and Boekelheide,K.
  TITLE     Multiple cadherin superfamily members with unique expression
            profiles are produced in rat testis
  JOURNAL   Endocrinology 141 (2), 675-683 (2000)
   PUBMED   10650949
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000002.1.
            
            On Dec 12, 2009 this sequence version replaced XM_342202.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643298.10092.1,
                                           SRR26360194.223889.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760393, SAMEA5760433
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-139               JAXUCZ010000002.1  70355689-70355827
            140-484             JAXUCZ010000002.1  70444132-70444476
            485-779             JAXUCZ010000002.1  70530339-70530633
            780-899             JAXUCZ010000002.1  70531915-70532034
            900-1067            JAXUCZ010000002.1  70532612-70532779
            1068-1255           JAXUCZ010000002.1  70553425-70553612
            1256-1509           JAXUCZ010000002.1  70555103-70555356
            1510-1646           JAXUCZ010000002.1  70560060-70560196
            1647-1768           JAXUCZ010000002.1  70564933-70565054
            1769-1877           JAXUCZ010000002.1  70570043-70570151
            1878-2129           JAXUCZ010000002.1  70573205-70573456
            2130-3169           JAXUCZ010000002.1  70576841-70577880
FEATURES             Location/Qualifiers
     source          1..3169
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q21"
     gene            1..3169
                     /gene="Cdh10"
                     /note="cadherin 10"
                     /db_xref="GeneID:29181"
                     /db_xref="RGD:619741"
     exon            1..139
                     /gene="Cdh10"
                     /inference="alignment:Splign:2.1.0"
     exon            140..484
                     /gene="Cdh10"
                     /inference="alignment:Splign:2.1.0"
     CDS             254..2620
                     /gene="Cdh10"
                     /codon_start=1
                     /product="cadherin-10 precursor"
                     /protein_id="NP_001162102.1"
                     /db_xref="GeneID:29181"
                     /db_xref="RGD:619741"
                     /translation="MSIYSFLRLFVLWACLPQFCCPELTFRRTPGLQQMTAESHVPRG
                     DGKILHRQKRGWMWNQFFLLEEYTGSDYQYVGKLHSDQDKGDGSLKYILSGDGAGTLF
                     IIDEKTGDIHATRRIDREEKAFYTLRAQAINRRTLRPVEPESEFVIKIHDINDNEPTF
                     PEEIYTASVPEMSVVGTSVVQVTATDADDPSYGNSARVIYSILQGQPYFSVEPETGII
                     RTALPNMNRENKEQYQVVIQAKDMGGQMGGLSGTTTVNITLTDVNDNPPRFPQNTIHL
                     RVLESSPVGTAVGSVKATDADTGKNAEVDYRIIDGDGTDMFDIITEKDTQEGIITVKK
                     PLDYENRRLYTLKVEAENTHVDPRFYYLGPFKDTTIVKISIEDVDEPPVFSRSSYLFE
                     VHEDIEVGTIIGTVMARDPDSTSSPIRFTLDRHTDLDRIFNIHSGNGSLYTSKPLDRE
                     LSQWHNLTVIAAEINNPKETTRVSVFVRILDVNDNAPQFAVFYDTFVCENARPGQLIQ
                     TISAVDKDDPLGGQKFFFSLAAVNPNFTVQDNEDNTARILTRKNGFNRHEISTYLLPV
                     VISDNDYPIQSSTGTLTIRVCACDSQGNMQSCSAEALLLPAGLSTGALIAILLCIIIL
                     LVIVVLFAALKRQRKKEPLILSKEDIRDNIVSYNDEGGGEEDTQAFDIGTLRNPAAIE
                     EKKLRRDIIPETLFIPRRTPTAPDNTDVRDFINERLKEHDLDPTAPPYDSLATYAYEG
                     NDSVAESLSSLESGTTEGDQNYDYLREWGPRFNKLAEMYGGGESDKDA"
     exon            485..779
                     /gene="Cdh10"
                     /inference="alignment:Splign:2.1.0"
     exon            780..899
                     /gene="Cdh10"
                     /inference="alignment:Splign:2.1.0"
     exon            900..1067
                     /gene="Cdh10"
                     /inference="alignment:Splign:2.1.0"
     exon            1068..1255
                     /gene="Cdh10"
                     /inference="alignment:Splign:2.1.0"
     exon            1256..1509
                     /gene="Cdh10"
                     /inference="alignment:Splign:2.1.0"
     exon            1510..1646
                     /gene="Cdh10"
                     /inference="alignment:Splign:2.1.0"
     exon            1647..1768
                     /gene="Cdh10"
                     /inference="alignment:Splign:2.1.0"
     exon            1769..1877
                     /gene="Cdh10"
                     /inference="alignment:Splign:2.1.0"
     exon            1878..2129
                     /gene="Cdh10"
                     /inference="alignment:Splign:2.1.0"
     exon            2130..3169
                     /gene="Cdh10"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gaaagcttga gttagaccga agtagaatca gtgagagaaa ataacagcag aaaacaaaca
       61 aaaaggggac agggtgacag tctcttcagg gttatttggc tggaaccaac ttccgttttc
      121 cagaagctga tgaaacaagc tcttggaaat atgtacatag cactaatgaa gtcttggaaa
      181 ccagtcgaga tctgatacca taaactggac tactttttca tcatctgcac tggaattttt
      241 caagaagtaa actatgtcaa tctattcgtt cttgagactg tttgttctct gggcatgcct
      301 gccccaattc tgctgtccag aattaacgtt cagaaggact cctgggcttc agcaaatgac
      361 tgcagaatcc catgtcccta ggggtgatgg taaaatcctt caccgtcaaa aacgtggctg
      421 gatgtggaac cagtttttct tactggaaga atatactgga tctgattatc aatatgtcgg
      481 caagcttcat tcagaccaag ataaaggaga cggatcgctc aaatatattt tgtctggaga
      541 tggagctggt actcttttta ttattgatga aaaaacaggt gatattcacg ccacaagaag
      601 aattgatagg gaagaaaagg ccttttatac tctgcgtgca caagctatta acagaagaac
      661 tctgaggcca gttgagccag agtcagaatt tgtgatcaaa attcacgata tcaacgacaa
      721 tgagcctaca ttcccagaag aaatttatac agccagcgtt cctgaaatgt ctgttgtagg
      781 tacttctgtg gtgcaagtca cagctacaga tgccgatgac ccttcatatg gaaacagcgc
      841 cagagtcatt tacagcatac ttcaagggca gccttatttc tctgtggaac cagaaacagg
      901 tatcataagg acagctctac caaacatgaa cagagagaac aaggaacagt accaggtggt
      961 tattcaagcc aaggacatgg gcggtcagat ggggggtctg tctggaacca ccacagtgaa
     1021 catcactctc acagatgtca acgacaatcc tcctcgcttc ccccaaaaca ccatccatct
     1081 gcgagttctt gaatcctctc cagttggcac agctgtggga agtgtaaaag ccaccgatgc
     1141 tgacacgggg aaaaatgccg aagtggatta ccgcattatt gatggagatg gcacagatat
     1201 gtttgacatt ataactgaga aggacacaca ggaaggcatc atcactgtga aaaagccact
     1261 tgactatgag aaccgaagac tatatactct gaaggtggag gcagaaaata cccatgtgga
     1321 tccacgtttt tactatttag ggccattcaa agatacaaca attgtaaaaa tctccataga
     1381 agacgtggat gagcctccag ttttcagtcg atcctcctat ctgtttgagg ttcatgagga
     1441 tattgaagtg ggcacaatca tcggtactgt aatggcaaga gacccagatt ctacttccag
     1501 tcccatcaga tttactttag atcgccatac tgatcttgac aggatcttta acattcattc
     1561 tggaaacgga tcactttata catcaaagcc acttgatcgt gaactatctc aatggcacaa
     1621 ccttaccgtc atagctgccg agatcaataa tcctaaagaa acaactcgtg tgtctgtttt
     1681 tgtgaggatt ttggatgtta atgacaacgc tccacaattt gctgtgtttt atgacacatt
     1741 tgtatgtgaa aatgccagac caggacagct gatacagaca ataagtgcag ttgacaaaga
     1801 tgacccctta ggtggacaga agttcttctt cagtttggct gctgtgaatc ctaacttcac
     1861 agtgcaagac aatgaagaca acactgccag aattttaacc agaaagaatg gcttcaaccg
     1921 tcatgaaata agcacctacc tactgccggt agtgatatct gataatgact accccattca
     1981 gagcagcact ggcaccctga cgatccgtgt ttgcgcctgt gacagccagg gcaacatgca
     2041 gtcctgcagt gccgaagccc tgctccttcc tgctggcctc agcactggcg ccttgatcgc
     2101 cattcttctc tgcatcatca ttctgctggt tatagtagtc ctctttgcag ccctgaaaag
     2161 gcaacggaag aaagagcctc tgattttatc caaagaagac atcagagaca acattgtgag
     2221 ctataacgac gaaggtggcg gagaggagga cacccaagcc tttgatattg gaaccctgag
     2281 gaatcctgca gctatcgagg agaaaaagct gcggcgagat atcattcctg aaacgttatt
     2341 tataccgcgg cggactccta cggccccgga taacacggat gtccgggatt tcattaatga
     2401 gcgcctcaaa gagcacgact tggaccccac tgcgcctccc tacgactcgc tggctaccta
     2461 tgcctatgaa ggaaacgact ccgttgctga atctctgagc tccttagaat caggtaccac
     2521 tgaaggagac caaaactacg attaccttcg agaatggggg cctcggttta ataaactagc
     2581 agaaatgtac ggtggtggtg agagcgacaa agacgcttag cctggcccct gagctctgtt
     2641 caacgagata cgtaactttg cagacattgt ctccacttca caatatttga tattcaggag
     2701 aaaaaattcc tgccactcag cacaagtttc ccacctattt cttaatttgt tcattaatta
     2761 tattaattcc ttcctgtaga atgtctcatg ggatatatac gacattttat ttaatcactt
     2821 ccaagagcca aagctatgga aattcaatgt tgcccatctt agtaaataaa agaaacccga
     2881 gcaggatagt tctcccttaa gcaacctcac gaacaagtcg cttctgttag atacacgtct
     2941 tgcccttgca aatgaagctt tgaaaagacg aagaaaacat ttaagatgta tcctgttctg
     3001 tacattaagt ttaaaaaaaa aagtccatgt ggtgttagta ggtgtgatat gcagcctggt
     3061 atacgaacat tcgtgcaatt tcatttcatc aaattctatc tgctaatgtt ttatatttat
     3121 atttttgtat ttatttttta aaaaaaataa accagttttt acaactact
//
