LOCUS       XM_039111481            1701 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus CUB domain containing protein 2
            (Cdcp2), mRNA.
ACCESSION   XM_039111481
VERSION     XM_039111481.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039111481.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 6% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1701
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1701
                     /gene="Cdcp2"
                     /note="CUB domain containing protein 2; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 Proteins, and 77% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:298306"
                     /db_xref="RGD:1563467"
     CDS             1..1701
                     /gene="Cdcp2"
                     /codon_start=1
                     /product="CUB domain-containing protein 2"
                     /protein_id="XP_038967409.1"
                     /db_xref="GeneID:298306"
                     /db_xref="RGD:1563467"
                     /translation="MRAEMEACLLLAAVLLDSGPGTHAMEASRRQSCLTRIQNPGADS
                     QPSFSLASGVKCGGVLSAPSGNFSSPNFPSLYPYNTECSWLIVVAEGSSVLLTFHTFD
                     LEYHDTCGFDFLEIYNGASRDKGNLLGRFCGQAPPPPFTSSWHVMSVVFHSDKHVASR
                     GFSAGYQKDVCGGVLTGLSGILSSPEYPNNYPNNVECHWLIRASGPATVKLVFVDFQV
                     EGSEECMYDHVTVLGAPGPAHGHHYCGSTRPPTLVSLGHELQVVFKSDFNIGGRGFKA
                     HYFSGECQEVFTAVRGNFSSPQYPGAYPNNIRCHWTIRLPPGYRVKVFVLDLGLEEPN
                     SLTRTCDFDHLAAFDGASEEAKLLGKWCGHHLPPPVTSSHNQLLLLLHTDRSTSGRGF
                     SVAYIGVVPMNVSCSRTDFQILISAQALAPLERTKVYLGSRSCAAQEVGSNFRIQARF
                     DTCGSESQRRNNTSVIVSVLYLDFSAAGHSDIHEYEVRCEPRRKEASVHLLSGSDLLG
                     SYAATAEHLQEAPPGEEEEILEGPGTMVTQDTSDTVFLGLCILAGVLMIIAIVVLMLL
                     "
ORIGIN      
        1 atgcgagctg agatggaggc ctgcctactg ctggcagcgg tactgctgga ctcgggtcct
       61 gggacccacg ctatggaagc ctcaaggaga cagtcttgcc tcacacgtat ccaaaacccc
      121 ggagctgatt cgcagccatc cttttctctt gcttcaggtg tcaagtgtgg gggtgtgctc
      181 tcggcaccat ctggaaactt ctccagccca aacttcccaa gtctgtatcc ctacaacacc
      241 gagtgcagct ggctgatcgt ggtggccgag ggctcctccg tgctgctcac tttccacacc
      301 tttgacctgg agtaccatga cacctgtggc tttgacttcc tggagatcta caacggggcc
      361 tctagagaca agggcaatct gctgggcagg ttctgtggcc aggcgccccc gccacccttc
      421 acctcctcct ggcacgtcat gtctgtcgtc ttccactcag acaagcatgt ggccagtcgt
      481 ggcttttccg caggctacca gaaagatgtg tgcggtggtg tcctgaccgg cctgtcaggg
      541 atcctcagca gccccgagta ccccaacaac taccccaata atgtggagtg ccactggctg
      601 atccgtgcct cgggacctgc cactgtcaag ctggtgttcg tggacttcca ggtggagggc
      661 agcgaagaat gcatgtatga ccatgtgact gtgcttggag caccaggccc tgcccatggg
      721 caccactact gtggcagcac cagacccccc acccttgtgt ccctgggcca tgagttgcag
      781 gtggtcttca agtctgactt caacattgga ggccggggct tcaaggcgca ctacttctca
      841 ggagaatgcc aggaggtgtt cacggctgtg cgtggcaact tctccagccc acagtaccct
      901 ggcgcctacc ccaacaacat ccgttgccac tggaccatcc gtctgccccc tggctaccgg
      961 gtcaaggtct tcgtcctgga cctgggcttg gaggagccca acagcctaac cagaacctgt
     1021 gactttgacc atctggcagc cttcgatggg gccagcgagg aggcaaagct gctggggaag
     1081 tggtgcgggc atcacctgcc accgcctgtc acctccagtc acaaccagct cctgcttctg
     1141 ctgcacactg accgcagcac ctctggcagg ggcttctccg tggcctacat tggagtggtg
     1201 cccatgaatg tgagctgttc tcgcacggac ttccagattc tgatctctgc ccaggcactg
     1261 gccccgctgg agcggaccaa ggtctacctg ggtagccgga gctgtgcagc ccaggaagtt
     1321 ggtagtaact tccggatcca ggcccgcttt gacacctgcg gttccgagtc tcagagaaga
     1381 aataacacct ccgtgattgt cagcgtgctg taccttgact tctctgctgc tgggcacagt
     1441 gacatccacg agtatgaggt gcgctgtgag ccgaggcgca aggaggcctc tgtccacctc
     1501 ctgtcgggct ctgatctgct cgggtcctac gctgccaccg ctgagcacct tcaggaggca
     1561 ccacctggag aggaggaaga gatcctggag ggcccgggga ccatggtgac ccaggacacc
     1621 agtgacaccg tcttcttggg cctctgcatt ctagccggag tccttatgat cattgccatt
     1681 gtggtcctga tgctgctgtg a
//
