LOCUS       NM_001106869            5232 bp    mRNA    linear   ROD 26-FEB-2024
DEFINITION  Rattus norvegicus CUB domain containing protein 1 (Cdcp1), mRNA.
ACCESSION   NM_001106869 XM_001078579 XM_236747
VERSION     NM_001106869.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5232)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473954.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_001078579.1, XM_236747.4.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMD00132267, SAMD00132275
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..5232
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q32"
     gene            1..5232
                     /gene="Cdcp1"
                     /gene_synonym="RGD1305578"
                     /note="CUB domain containing protein 1"
                     /db_xref="GeneID:301082"
                     /db_xref="RGD:1305578"
     exon            1..203
                     /gene="Cdcp1"
                     /gene_synonym="RGD1305578"
                     /inference="alignment:Splign:2.1.0"
     CDS             122..2623
                     /gene="Cdcp1"
                     /gene_synonym="RGD1305578"
                     /codon_start=1
                     /product="CUB domain-containing protein 1 precursor"
                     /protein_id="NP_001100339.1"
                     /db_xref="GeneID:301082"
                     /db_xref="RGD:1305578"
                     /translation="MARSACGFSVALLGTLLLGTACLLRGTEASEIALPRGSDITVHI
                     KLVSPALPVKFCYIVVSRQHVTELTIRPGERKSFTFSCNNPEKHYVLKIEKNIDCMSG
                     PCPFGEVRLQPSKSELPILNRTYIWDVRAHKSIGLELQFATPRLRQIGPGESCADGVT
                     HSISGHIDATEVRIGTFCSNGTVSRIKMQEGVKMALHLPWFHPRNISGFSIANRSSIK
                     RLCIIESVFEGEGSATLMSANYPGGFPEDELMTWQFVVPAHLRASVSFLNFNVSNCER
                     KEERVEYYIPGSTTNPEVFRLEDQQPGNMAGNFNLSLQGCDQDAQSPGILRLQFQVLV
                     QRPQNESNITYMVDLSQERTMSLTIEPRPVKHGRRFVPGCFVCLDSRTCSTNVTLTAG
                     SKHKISFLCDDLARLWMNVEKTLSCLDHRYYYGKSFNLQVPKDILQLPVQLHDFSWKL
                     LVPKDRLGLMLVPGQKLQQHTRERPCNTSFGYQVASTTPGQDLYFGSFCPGGSIEKIQ
                     VKQNSSVTLRTYAPGFQQEVSKQVLTVSLIPYFKEEGIFTVTPDSKNKVYLRSPNWDR
                     GLPALSSVSWNISVPSNQVACLTFFRERSGLACQSGRAFMIIQEQQTRAEEIFSLEEE
                     VLPKPSFHHHSFWVNISNCSPMNGKQLDLLFWVTLTPRTVDLTVIIGAAGGGALLLFA
                     LGLIICLVKKKKKVDKGPAVGIYNGNANTQMPQTQKFQKRRKDNDSHVYAVIEDTMVY
                     GHLLQDSGGSFIQAEVDTYRPFQGPMGDCPPTPPPIFSRTPTAKFTADKLAPSSPPES
                     ESEPYTFSHPNKGEVGVRDTGIPLLNIQGPMETEE"
     exon            204..413
                     /gene="Cdcp1"
                     /gene_synonym="RGD1305578"
                     /inference="alignment:Splign:2.1.0"
     exon            414..776
                     /gene="Cdcp1"
                     /gene_synonym="RGD1305578"
                     /inference="alignment:Splign:2.1.0"
     exon            777..1145
                     /gene="Cdcp1"
                     /gene_synonym="RGD1305578"
                     /inference="alignment:Splign:2.1.0"
     exon            1146..1367
                     /gene="Cdcp1"
                     /gene_synonym="RGD1305578"
                     /inference="alignment:Splign:2.1.0"
     exon            1368..1748
                     /gene="Cdcp1"
                     /gene_synonym="RGD1305578"
                     /inference="alignment:Splign:2.1.0"
     exon            1749..2114
                     /gene="Cdcp1"
                     /gene_synonym="RGD1305578"
                     /inference="alignment:Splign:2.1.0"
     exon            2115..2199
                     /gene="Cdcp1"
                     /gene_synonym="RGD1305578"
                     /inference="alignment:Splign:2.1.0"
     exon            2200..5232
                     /gene="Cdcp1"
                     /gene_synonym="RGD1305578"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgcaggtgag cggcggggca gggcggggcg cagcttcgtt tcggtgcccg ggcgccgctg
       61 aggccactcg cagacacagg ccacaatcgt gccctaggga gactgcggtg acccccgagt
      121 catggcccgc tcggcctgcg ggttctcagt cgctctgctg gggaccctgc tgctgggcac
      181 cgcgtgcctg ctgcgcggga cagaagcatc tgagattgct ctgccccgtg gaagtgacat
      241 tacagtgcac atcaagctgg tgagcccagc ccttccagtg aaattctgct acatcgtcgt
      301 gtctagacag catgtgactg agttgactat cagacctgga gaaagaaagt cttttacctt
      361 tagctgcaac aatccagaga agcactatgt cttgaagatt gagaagaata ttgactgcat
      421 gtcaggcccg tgtccttttg gagaggttcg tcttcagcca tccaaatcag aactgcccat
      481 cctcaacaga acctacatct gggacgtcag agctcataag agcattggcc tggagctgca
      541 atttgcaacc cctcgactga ggcagattgg gccaggagag agctgtgcag atggggtaac
      601 ccactccatc agtggccaca tagatgccac cgaggtcagg attgggacct tctgcagtaa
      661 cggcaccgtg tcccggatca agatgcaaga gggtgtcaag atggccttac acctgccctg
      721 gttccacccc aggaacatct caggcttcag tattgcaaat cgatcgtcta tcaaacgcct
      781 gtgcatcatt gagtcagtat ttgagggtga aggctcagca accctgatgt cagccaacta
      841 cccaggaggc ttccctgaag atgagcttat gacctggcag tttgttgtcc ctgcacacct
      901 aagggccagc gtctccttcc ttaacttcaa cgtctccaac tgtgagagga aggaagagcg
      961 tgttgagtac tatatcccag gatccaccac caacccggag gtgttcaggc tggaggacca
     1021 gcagccagga aatatggctg ggaacttcaa cctctccctg caaggctgtg accaggatgc
     1081 ccagagccca ggaatccttc gactccagtt tcaggtcctg gtccaacgtc cacagaatga
     1141 aagcaatata acctacatgg tggacctgag tcaagagcga accatgtcgc tcaccatcga
     1201 gccgcggcca gtcaaacatg gccgaaggtt tgttcctggg tgtttcgtgt gtctagactc
     1261 tcggacttgt agtaccaatg tcaccctgac ggctggctcc aaacacaaga tttccttcct
     1321 gtgtgatgac ttggctcgcc tgtggatgaa tgtggagaaa accctaagct gtctggacca
     1381 ccgctactac tacgggaagt ccttcaacct gcaggtgcct aaggacatcc tccagctgcc
     1441 tgtgcagctg catgacttct cctggaagct actggtgccc aaggacaggc tcggccttat
     1501 gctggtgcca ggccagaagc tacagcagca tacacgagag aggccttgta acaccagctt
     1561 tggttaccag gtggccagca ccacccctgg ccaggacctg tactttggtt ccttctgccc
     1621 aggaggctcc atcgagaaga tccaggtgaa gcaaaatagc tcggtgacac tgcgaaccta
     1681 tgcccccggc tttcaacaag aagtctccaa gcaagtcctg acagtgtctt taataccata
     1741 cttcaaagag gaaggcatct tcaccgtgac cccagactca aaaaacaagg tctacctgag
     1801 atcacccaac tgggaccgtg gcctgcctgc cctctcctca gtgtcttgga acatcagcgt
     1861 gccaagcaac caagtggctt gtctgacctt cttcagagag cgttctggct tggcctgtca
     1921 gtcagggcga gcattcatga tcatccagga gcagcagacc cgggcagagg agatcttcag
     1981 cctggaggag gaagtgctgc ctaagccaag tttccaccat cacagtttct gggttaacat
     2041 ctccaattgc agccccatga atggcaagca gttagatttg ctcttctggg tgactcttac
     2101 cccaaggact gtggatttga ctgtcatcat tggtgcagca ggaggcggag ctctgctgct
     2161 gtttgccctg gggctcatca tctgccttgt gaaaaagaag aagaaggtgg acaagggtcc
     2221 tgctgtgggt atctataatg gcaatgccaa tacccaaatg ccccagactc aaaagtttca
     2281 gaaaaggcga aaggacaatg actcccatgt gtatgctgtc atcgaagaca ccatggtgta
     2341 tgggcacctg ctgcaggact cgggtggatc cttcatccaa gcagaggtgg acacctatcg
     2401 gcccttccag ggccccatgg gagactgccc ccccacgcca ccccctatat tctccaggac
     2461 cccaactgca aagttcactg cagacaagct ggctcctagt agccctcctg agtctgagag
     2521 tgaaccctac actttctcgc accccaacaa gggggaagta ggtgtcaggg atactggcat
     2581 ccccttactt aacatccaag gaccaatgga gactgaagag taattcagcc cctttccaaa
     2641 gactttgctg agacaatagc accaggcatt gagaaatgaa gaactgtccc atccagaagt
     2701 cagagggaag tgcgatcagc tagaaggaat tttgcaaggt gccatcaact cctggttttc
     2761 tggtggactg cttccagtga tgagcaaatc atggcttctg atggggacac cgtcctaaag
     2821 ctcaggcctt cctgaactca ggttgtgttg gggctggcca cagggacaga agagagacac
     2881 gatccaccca gacaggacta cagtgagccc tgaatgccta gattcccaat gacaagcaga
     2941 ctgactccca ggctctccac ttgaggtttc cactctcact ggagtcctat ggatgaaaat
     3001 gacaatgtgc cttatttttt attagtagta gtcatatttg tttggcagtc ctactgtgtg
     3061 cttttaaaaa gttggatgtg gagctggggg tgtggctcag ttggtagagt gcttacctaa
     3121 catgcacaaa gttctggcct ccgtgctcag cacggcataa aagcaggcag aatggtacac
     3181 acctgtaatc tcaggcggat cagaacttca agtcatcatc aagcatgaac tgagttggag
     3241 gccctcctgg tccgtataag atcctcttga gaacacgcac agcttttttt gaccgctgta
     3301 gtaatagctt gtgctaactg gtctggacag ccatgctttg gtttttgcaa accacttggt
     3361 aaatgtgcac ctgtcaggga gattgacatc tacccagcca gaagagtatc tgcatgtatg
     3421 tatctcttat gcactaagag atttcccaat cctccctgac tgcatacagc tgccccactg
     3481 cagaattgat cacagatccc ctcgttcctt actccgagaa ataagagaaa tttccttgag
     3541 ctgccctgtg tggtgtgtga ctctcccaac tgcagcaata ctttgacatg taaacagaaa
     3601 atttgagagt aacttgatcc tttgaaaata tataaatata gatggtggtt gtacctttaa
     3661 tcccagaact caggagacag aggcaggcat atctcggtga gtttgaggcc accctggact
     3721 atatagtgag tcctaggaca gtcagggttc tagaaaccca gttacacaga gaaacccttt
     3781 cttgacaaaa caaaacaaaa caaaaaacaa aaagaaaaat gaaatactgt aatacacaca
     3841 cacacacaca cacacacaca cacacacacc agtgaccgtc tgtatcaatt tcatggtatt
     3901 actacagcac gtctttgatg gcttaaaaac agcatcaata cagttctaga gaattcccaa
     3961 actagcttgc ctgaactaaa atcagggtgt cagtaaagct gtgcttccaa ggctctcaga
     4021 atccccttgc ctttcccagc atctataagc atccatggcc gggcgagtct ctctcggtat
     4081 ggctggtcac taattgaact acttgacact ttcacttgca gatccaatgt agttcccatg
     4141 tcagcagcct taacttaatc accagggggc agtcccttta ctgtgtgtca ggtacaacat
     4201 ccactggctg ggaggtgtga gcatctctaa aagtaagagg aggacacctg cttctcccac
     4261 cctcctgcca ctggtactcg aaggagaccg tacaaaatga cccagcataa aaagtgtttg
     4321 gttgagcctg ttgatatttt ttttaagttt taaatttatt tttcctaaaa ttccatccca
     4381 aaggacttgt tcatgctgga tgaatatcct tgaccagaga tgcccagcta aagtcactca
     4441 caggtgactc tgcccctcaa ataggacatc caggataaat tagtccccat cttgcctggt
     4501 tgcctttact ctgaggctat gtgcttgtgg cttaggttga cactgaattg tacaaaaagc
     4561 aaaggaggag tttccatcac ttacagagtg aggagacagc aaaagttcct cttgctatga
     4621 tgtagagggg aaaccacagt agtgtagact acacacagag ttcaggactc tggcaagcct
     4681 tctccaagaa gtaagtctga ttcacgatgc tcagggaatt gaccttagaa aggctacatc
     4741 ttgctcttgc agcctctgag acagagctcc tggccctttt gagctctctc caacaaggag
     4801 agggttcact ttcgtctaac tcctttccag gagagaaggt tgtctcttac ccagctaccc
     4861 aaggtgctga taaccctcca tgaagggcca gggacaactg tggctccttc catcacctgg
     4921 aatcaccatg ctgagcctct ccaatgcctt ctcccttcaa gcaccccttg aggagacagt
     4981 cagtctcaca tgttggttct tactgtgtgt cagctcagta cccttctacc ttggctctgc
     5041 tgagggcatg tggctgtgta tggaaggaaa aggttaactc ttccatgggg acaagccaaa
     5101 gtccatcagc tgtaaccgca gtacaggttg gaggaccagt ctgtggatct gcaaagcgca
     5161 tatgaaaatt atttatttaa tgacagataa catcttatcc atttactttt ataaataaac
     5221 agatttataa at
//
