LOCUS       XM_039112764            2488 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus cell division cycle associated 4
            (Cdca4), transcript variant X2, mRNA.
ACCESSION   XM_039112764
VERSION     XM_039112764.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039112764.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2488
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2488
                     /gene="Cdca4"
                     /note="cell division cycle associated 4; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 21 ESTs, 4 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     51 samples with support for all annotated introns"
                     /db_xref="GeneID:500727"
                     /db_xref="RGD:1563593"
     CDS             441..1172
                     /gene="Cdca4"
                     /codon_start=1
                     /product="cell division cycle-associated protein 4 isoform
                     X1"
                     /protein_id="XP_038968692.1"
                     /db_xref="GeneID:500727"
                     /db_xref="RGD:1563593"
                     /translation="MVTEDRMFARGLKRKCGDQEEGVEGFGTVPSYSLQRQSLLDMSL
                     VKLQLCHMLVEPNLCRSVLIANTVRQIQEEMSQDGVWHGMAPQSVERAPIDRLVSTEI
                     LCRTVRGSEGEHPTSELEDSPLQSSASELPIVGSAQGQRNPQSSLWEMDNPQENRGSL
                     QKSLDQIFETLENKNSSSVEELFSDVDSSYYDLDTVLTGMMTGTKSSLCNGLESFTAA
                     APPPSSTCKSDLAELDHVVEILVET"
ORIGIN      
        1 agcgcgcgag cctaacggct gaagtcgaag cgcgggagac tccgccggtg aggctccgcc
       61 ttgcgtgggt ttgaacgaag ctccgccccg cacgccacca atcggcgctc gcgcggcggc
      121 gccatggcga ccctttgtgg gcactgactg atcccggggc cagacggagt ggcgggtctg
      181 ccttgcggcg ccggatttcc tgcaggccag ggtggcctca gactgacagt gcaaccagaa
      241 acaaccttgc tccccttctc tctgcttccc aagtgtgcca ccatacccag cccagaaacc
      301 actaacttct ggttctcctt aaaacccagc atcagatgaa tgctggattg tggttacagt
      361 cccagcccga gttgtgctag gtctgctcag ataaagccaa gactaatggc tggtcagagc
      421 ccaggaagct gcatttccac atggtcactg aggacaggat gtttgctaga ggcctgaaga
      481 ggaaatgtgg tgaccaggaa gaaggagtag agggttttgg cactgtccct tcctatagcc
      541 tgcagcgaca gtcactcctg gacatgtccc ttgtgaagct ccagctctgt cacatgctag
      601 tggagcccaa cctctgccgc tcagtcctta ttgccaacac agtacgacag atccaggagg
      661 aaatgagcca ggatggcgtg tggcatggga tggcacccca gagtgtagaa cgggcaccaa
      721 ttgaccgact agtatccaca gagatcctgt gtcgtacagt gaggggatct gagggggagc
      781 accccacctc agaactggaa gacagtccct tgcaaagctc agcttccgag cttcccatcg
      841 ttggctcagc acaggggcaa aggaaccctc agagcagcct ctgggagatg gacaacccac
      901 aagaaaaccg gggaagcctt cagaagtccc tggaccagat atttgagacc ctggagaaca
      961 aaaactccag ttcagtggag gaactcttct cagatgtgga cagctcctac tatgacctgg
     1021 acacagtgct aacaggaatg atgactggga ccaagtccag tctctgcaat ggtcttgaga
     1081 gctttactgc agccgcccct cctcccagct ccacttgcaa gtctgacctg gctgaactgg
     1141 accacgtcgt agagattctg gtggagacct gagaggacac cccagtgggc caaggacaag
     1201 gccaccactc ccccatggag ctccatgtgc ggtgacccag agacagacaa gcacttgtcc
     1261 taagaggggc tctgactctt gagccagggt ctccacctct gtctgactat gaaatatctg
     1321 ggacagattt tcctctgcaa ggatcgcagc cctggagctg cctcagggct agttagttct
     1381 tggggaggac agaacggatg catctcaagg aactgagcta gctcgctcgc tgaaggctct
     1441 gggctcatta tcctgtgtgt gacactgggg tgactggagg atggtgggcc acagctgtgt
     1501 ctagtctatt ttaaattaga taggtgaact ttctaaaatt aagttttata tgttttgggc
     1561 aatattttgt cttaagatat attttttaaa ctttttatac tttagatttt tttcagctat
     1621 tttcttaaaa gtatattttt tctacaaaca tcctctgctg ctacattaga aacatttata
     1681 acctaaatac gattggtgtg tcatttttaa ggtttaaata gaaaactttg agtctctaca
     1741 cttccaaggc aactgtaaat gtagccggcc aggtgtttac atgagaggct ccattatggt
     1801 ctacattcca gtagagcgct tgaagggaac catgcccagc cccactgctc cctcctccct
     1861 cactgggtct gtctgtaaga gctgtcttcc caggctttcc tgtgcagggt ggttttattt
     1921 atgcctattt atatgtaaac gcactgaggg ctaaggtctt ctgtctggaa atcacaacac
     1981 cgttcttcag agactgtggt gaggcagtgc cttatgcagg tcttgtcctt gggtccccag
     2041 cccagcactg tgtgacacga ggacacgaca tcccaacaac aaccagcacc acatgctaca
     2101 tgtcaagagt atgcgtggag actgcagggt gccgggcatg tgtgtgctta gaaagggtgt
     2161 gcagcccacc atgtgctcaa taggagtacc tgtgcttgct tgctttaaaa tggtgcttga
     2221 acattttaag gttaaaaaca atctgattct gtaacttagt gctcctccat cctggggtgg
     2281 ccccatgctg tctgcttggg tctcatggtc ccgataacca gatcacatgt cagaccccac
     2341 ccccacccca ccatgctttt gtttctcttg tgctgttctt ttggacgtcc ccacctgagc
     2401 ctaagaggtt ttattttgta tgtgttatga ctgttcttca ctatcaacaa tgtaaacctc
     2461 actttattaa aggaatccag caaatgga
//
