LOCUS       XM_039103894            1740 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus cell division cycle 20B (Cdc20b),
            mRNA.
ACCESSION   XM_039103894
VERSION     XM_039103894.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio            :: 34% of CDS bases
            frameshifts          :: corrected 4 indels
            internal stop codons :: corrected 1 genomic stop codons
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-175               JACYVU010000065.1  37193619-37193793
            176-387             JACYVU010000065.1  37194024-37194235
            388-414             JACYVU010000065.1  37195184-37195210
            415-415             "N"                1-1
            416-510             JACYVU010000065.1  37195211-37195305
            511-511             "N"                1-1
            512-601             JACYVU010000065.1  37195306-37195395
            602-735             JACYVU010000065.1  37198618-37198751
            736-829             JACYVU010000065.1  37208266-37208359
            830-943             JACYVU010000065.1  37215533-37215646
            944-1019            JACYVU010000065.1  37219915-37219990
            1020-1128           JACYVU010000065.1  37220306-37220414
            1129-1129           "N"                1-1
            1130-1194           JACYVU010000065.1  37220415-37220479
            1195-1196           "NN"               1-2
            1197-1233           JACYVU010000065.1  37220480-37220516
            1234-1359           JACYVU010000065.1  37223866-37223991
            1360-1477           JACYVU010000065.1  37224485-37224602
            1478-1691           JACYVU010000065.1  37241814-37242027
            1692-1740           JACYVU010000065.1  37243278-37243326
FEATURES             Location/Qualifiers
     source          1..1740
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1740
                     /gene="Cdc20b"
                     /note="cell division cycle 20B; The sequence of the model
                     RefSeq transcript was modified relative to its source
                     genomic sequence to represent the inferred CDS: inserted 5
                     bases in 4 codons; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 2 Proteins, and 7%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:688823"
                     /db_xref="RGD:1584143"
     CDS             1..1740
                     /gene="Cdc20b"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 5 bases in 4 codons;
                     substituted 1 base at 1 genomic stop codon"
                     /codon_start=1
                     /transl_except=(pos:823..825,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: cell division cycle protein
                     20 homolog B"
                     /protein_id="XP_038959822.1"
                     /db_xref="GeneID:688823"
                     /db_xref="RGD:1584143"
                     /translation="MEVYNITQHSVGIVVNKQVKGKVLADRINEYTKHSKSRGNLLKW
                     VKEKDQKREEATEQEARGQFHRVKDKCQQALLPPETHLKYRCLVLFSSGGDQRFLAVD
                     VIAEVCSLATVPFPLGSSPSSIPSSCKEFDSVAPTYXQLKSNLVKRPSAEIAVASRWQ
                     PSPARAPQSSXSMEEGPPSRIPESLGSGLKIAPAAGTLTLRSHNKDSLKTPAKGSSEM
                     SNSTPHFCKTPLAGDRGWKENAATKGQKCLNQLFATQKGVQQTDGKMCLCEESRCVXT
                     GCRDGAGDEFYLRRFSGVRHSTCQSEVKIHPPGLRNDYYFSSHFDLPNFLSLTTEMMA
                     LSQALLGSRLGRVHHYDVQVAQHHVGTFHHKEAECALKWSPKXRLLSSGCNDGLLTIW
                     PHSLGPXPLKVIPQSTAVKAMEWCSWQSEVLAVGRGMEDGCLHILDVNTERSIQTPST
                     HSQIFSLIWLPKTKEIATGQGAPKNDVALWTCPTLFRYCGFFGHRARVLHLALSPDQT
                     CLFSAAADGTACVWKCQESPNPARPREDTSAGFPSLLGRWEWKLPYPTLPCLILFRSQ
                     VWDMGLLHIVNSR"
ORIGIN      
        1 atggaagtct acaacatcac ccagcacagt gtaggcatcg ttgtaaacaa gcaagttaag
       61 ggcaaggttc ttgcagatag aattaatgag tacaccaagc actctaagag ccgaggcaac
      121 ctcctgaagt gggtgaagga aaaggatcag aagagagagg aggccacaga gcaagaggcc
      181 agaggccagt ttcacagggt aaaggacaaa tgtcagcagg ctctgcttcc tccagagact
      241 catctgaagt accggtgcct tgtgcttttc agttctggtg gagaccagcg ttttctggct
      301 gtggacgtta ttgctgaagt ctgctctctg gccacagtgc catttcctct cggatcatca
      361 ccttcaagta tccccagctc ttgtaaggag tttgactcag tcgccccgac atacntgcaa
      421 ctcaagagca acttggtgaa gaggccgtct gcagagattg ctgtggccag caggtggcag
      481 ccaagcccag ccagggcccc gcagagctct ntctccatgg aagagggccc tccctcccgc
      541 atccctgaat ctctgggatc tggtctgaag atagcaccag cagcaggcac cctaactcta
      601 agatcccaca acaaagattc actgaaaacc ccagctaaag gaagttcaga aatgagtaac
      661 tccactcctc atttttgcaa aacacctctt gcaggggaca gaggctggaa ggaaaatgct
      721 gccaccaaag gccagaaatg cctaaatcag ctatttgcaa cccagaaggg agttcagcaa
      781 actgatggga aaatgtgtct ctgtgaggag tcccggtgtg tctagacagg ttgtagagat
      841 ggggctggag atgaatttta ccttaggaga ttcagcggtg tccgccattc cacatgccaa
      901 tcggaggtga agattcatcc ccctggtctt cgaaatgact actatttctc ctcacacttt
      961 gacctcccaa acttcctgtc attgaccaca gagatgatgg ctctgtccca ggctttgctt
     1021 gggtccagat tggggcgtgt ccatcactat gatgttcagg tggcccagca tcatgtagga
     1081 acctttcacc ataaggaggc tgagtgtgct ctgaaatggt cacccaagnt caggctgctc
     1141 tccagtgggt gtaatgatgg attattgaca atatggcccc atagtctagg gcctnngcca
     1201 ctgaaagtca tacctcagtc cacggcagtt aaggccatgg agtggtgttc ctggcaatct
     1261 gaggtccttg ccgttggaag aggaatggag gacggatgcc tacatatttt ggatgtaaat
     1321 actgagagga gcattcagac tccaagcaca cactcacaga ttttttccct catctggcta
     1381 cctaagacaa aggagattgc aactggccaa ggtgctccca agaatgatgt ggcactgtgg
     1441 acctgcccca cactgttcag gtactgtggg ttctttggtc acagagccag agtgctgcat
     1501 ttggccctga gtccagacca gacatgccta ttttctgctg ccgcagatgg gaccgcatgt
     1561 gtgtggaagt gccaagagtc acccaaccca gccaggccta gggaggatac ttccgcgggc
     1621 tttccttctc tactaggtcg ttgggaatgg aagttgccat atccgactct tccttgcctg
     1681 attcttttca ggtctcaggt ttgggatatg gggctgcttc atattgtcaa cagccgctga
//
