LOCUS       XM_039106816            5183 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus codanin 1 (Cdan1), transcript variant
            X1, mRNA.
ACCESSION   XM_039106816
VERSION     XM_039106816.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039106816.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5183
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5183
                     /gene="Cdan1"
                     /note="codanin 1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 2 mRNAs, 9 ESTs, 4 long
                     SRA reads, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 191
                     samples with support for all annotated introns"
                     /db_xref="GeneID:311348"
                     /db_xref="RGD:1306771"
     CDS             65..3757
                     /gene="Cdan1"
                     /codon_start=1
                     /product="codanin-1 isoform X1"
                     /protein_id="XP_038962744.1"
                     /db_xref="GeneID:311348"
                     /db_xref="RGD:1306771"
                     /translation="MAAVLESLLREEVPVAAAVRWIARSTPSSEDSSEVAALSALRPL
                     RKEFVPFLLNFLREQSSRVLPQGPSTPAKTPGASAALPARQGAPPRGGRGARSQLFPA
                     TEPLSTSAEAPLARRAGRRRGPGPSRERGGRGSGGPEEGASSESPPWAGGRKPKGSGS
                     PGSPRLSLSDPPNLSNLEEFPPVGTVPPGSAGRTKPSRRINPTPVSEERSLSKPKTCF
                     TSPPISCVPSSQPSALDTSPWGLGLPPGCRSLQEEREMLRKARSKQLQQSPTPACPAP
                     DSGSPVPNRTGNLTAEPADPARVSSRQRLELVALIYSSCIAENLVPNLFLELFFVLQL
                     LTARRMAATKDSDLESSQGALDSLETPLFRSIHDCVFFAVQVLEHQFQVLSYLDKGTL
                     KLLAENERLLCFSPALQGRLRAAYEGSVAKVSLVIPPSAQAVSFQPETDNRANFSSDR
                     AFHTFKKQRDVFYEVLREWEDHHEEPSWDFEKGLGSRIRAMMGQLSAACSHSHFVRLF
                     QKQLLQMCQSPGGAGGSVLGEAPDVLNMLGADKLGRLRQLQERLIAPQSSGGPCPPPT
                     FPGCQGFFRDFIMSASSFHFNQHLMDSLSLKIRELNGLRLPQHEPGDEDGESDVDWQG
                     ERRQFAVVLLSLRLLAKFLGFVAFLPYRGHEPPPTRELQDSILALRSQVPPVLDIRAL
                     LQQGLWARRAVLTVPWLVEFLSFADHIVPLLDYYRSVFTLLLHLHRSLVLSKENEGEM
                     CFLNKLLLLAVLGWLFQIPTVPEDLFFLEDGQVDAFEVDTTTSEHGLDSVPVVDQQLL
                     YTCCPYIGELRKLLASWVSGSSGRSGGFVRKITPTTTTSLGTLPLKTSQGLQAQLAEA
                     FFHNQPPSLRRTVEFVAERIGSNCVKHIKATLVADLVHQAESLLQEQLVTRGQEGGDP
                     AQLLEFLCSQLCPHGAQALTQGREFCQKKSPTALRALLPEETPAAVLSSAENIAVGLA
                     TEKACSWLSANITALIRREVKAAVSRMLRAQGPEPTARVERRGCSRACEHHAPLPSHL
                     ISEIKDVLSLAAGPRDPEEGVSPEHLEQLLNQLGQSLKCRQFLCPTAEQHLAKCSVEL
                     ASLLVADQIPILGPPTQHRLDRGHARRLLHMLLSLWKDDFQGPVPLQLLLSPRNVGLL
                     ADTRPREWDLLLFLLRELVEKDLMGHLEIEACLVSLNEAQWPGDFSEELSTLFRLFLA
                     EPHLLEPQLRACELMQPNRGTVLAQS"
ORIGIN      
        1 gcccctcccg gctgcctgtg gcgcgtgtgc gcctgcgcag tagcctcaga gcgcctggac
       61 agggatggcg gccgttttag agtcgctgct gcgcgaagag gtgccggtcg cagccgccgt
      121 gcggtggatc gcgcgcagca ccccgagttc ggaggatagc tccgaagtgg ctgctctgag
      181 cgcacttcgg cctctgcgga aggaattcgt gccgttcctg ctgaacttcc tgagggagca
      241 gagcagccgg gtcctcccac agggcccctc cacccccgcc aagaccccag gcgcctcggc
      301 cgccttgcca gcgaggcagg gggccccgcc acggggtggc cgtggggcgc gcagccagct
      361 tttccctgca accgagcccc tcagcacctc cgccgaggca cctctggccc gccgtgcggg
      421 ccgcaggcgg ggtccgggac cgtcccgcga acgaggtggt cggggatccg ggggccccga
      481 ggagggggcc agcagcgaga gcccgccttg ggccggaggc cggaagccta agggctcagg
      541 cagccctggc agccccagac tgtcgctctc agatccgcca aacctcagca acttggagga
      601 gttccctcct gtaggcaccg ttccgcccgg ctctgcaggc aggacgaagc cttctcgaag
      661 gatcaaccca actccggtga gcgaagagcg gtcactgtcc aagcccaaga cctgcttcac
      721 ctcaccccca atcagctgtg tccccagttc ccaaccctca gccctggaca ctagcccttg
      781 gggccttggc cttcccccag ggtgcagaag tctgcaagag gagcgggaga tgctcaggaa
      841 ggcgcgatcc aagcagctcc agcagtcacc taccccggcc tgccctgccc cagactcggg
      901 gtctcccgtt cccaacagaa caggaaacct cacagcagag cctgctgacc cagccagagt
      961 gtcttctcga cagcgcctcg agctggtagc cctcatctac tcctcatgta ttgctgagaa
     1021 cctagtacca aaccttttcc tggagctttt cttcgtcctt cagctcctta ctgcccggag
     1081 aatggcggcc accaaggaca gtgaccttga atcgagtcag ggtgccctag attccctgga
     1141 aactcccctg tttcggagca tccatgattg tgtcttcttt gcagtgcagg ttttggagca
     1201 tcaatttcag gttctctcct acctggataa agggacctta aagctgctgg ccgagaatga
     1261 gcggctgctg tgcttctcac cagctctgca aggccgcctt cgagctgctt atgaaggcag
     1321 tgttgccaag gtctcccttg tgataccacc ctctgctcaa gctgtctcct ttcagccaga
     1381 aactgacaat cgtgccaact tctccagtga tcgagccttc catactttta aaaagcagag
     1441 agatgtgttc tatgaggtac ttcgagaatg ggaagaccac cacgaggaac ccagctggga
     1501 ttttgagaag gggctgggta gcaggatcag agccatgatg ggtcaacttt ctgcagcctg
     1561 cagccacagc cactttgtcc ggcttttcca aaagcagctt ctccagatgt gtcagagccc
     1621 tggcggtgct gggggatctg ttttggggga agctccagat gtattgaata tgctaggagc
     1681 tgacaagctc ggacggttgc ggcagctcca agaacggctt atagcccctc agagcagtgg
     1741 aggaccctgc ccacccccca ccttcccagg ctgtcaaggc ttcttcaggg acttcatcat
     1801 gagtgccagc agctttcatt ttaatcagca tctcatggat agtttaagtt taaagattcg
     1861 ggagctcaat ggccttcgcc tgcctcagca cgagcctggt gatgaagatg gggaatctga
     1921 cgtggactgg cagggtgaac ggaggcaatt tgctgtagtg cttcttagtc ttagactttt
     1981 ggctaaattt ctgggctttg tggctttcct gccataccgg ggacatgaac cgcccccaac
     2041 ccgtgagctt caggactcta ttctggccct caggagccag gtccctcctg ttctggatat
     2101 acgggctctg ttgcagcagg ggttgtgggc ccgtcgggca gtgctcactg tgccctggct
     2161 ggtggaattc ctctcttttg ctgaccacat tgtccccttg ctggactatt accggagtgt
     2221 ctttactctc ctgctgcact tacatcggag tttggtctta tcaaaggaga atgaaggaga
     2281 gatgtgcttc ctgaataagc tgctgctgct tgctgtcctg ggatggcttt tccagatacc
     2341 tacagttcct gaggacttat tctttctaga agatggtcag gtagatgcct ttgaggtgga
     2401 cacaactact tcagagcatg gattggacag tgtacctgtt gtggaccagc agctgttata
     2461 tacctgttgc ccttacattg gagagctccg gaaactgctt gcttcctggg tttctggaag
     2521 cagtgggcgg agtggaggct ttgtgaggaa aatcactccc actacaacca ctagcctggg
     2581 aaccctgcct ctcaagacca gccaggggtt gcaggctcaa ctcgctgagg cctttttcca
     2641 caaccagcca ccctccctgc gcaggactgt agaatttgtg gcagaaagaa ttggatcaaa
     2701 ctgtgtcaaa cacatcaagg cgacactggt agcagacttg gtgcatcaag cagagtcact
     2761 tcttcaggag cagctggtga cacggggaca agaaggggga gatccagcac agctgttgga
     2821 attcttgtgt tctcagctgt gcccccatgg ggcccaagca ttgacccagg ggcgagagtt
     2881 ctgccaaaag aagagcccca ctgccctgcg agcattgtta ccagaggaga ccccagctgc
     2941 tgttctaagc agtgcagaga acattgctgt ggggcttgca acagagaaag cctgctcttg
     3001 gttgtctgcc aacattacag cgctgattag aagggaggtg aaagcagccg tgagtcgcat
     3061 gctacgagcc cagggtcctg agccaactgc ccgggtggag cggaggggct gctcccgagc
     3121 ctgtgagcac catgctcccc tcccctccca cctcatctcc gagataaaag atgtgctctc
     3181 cctggctgcc ggacctcggg accctgagga gggagtttcc ccagagcatc tggaacagct
     3241 cctaaaccag ctgggccagt cactgaaatg ccgccagttt ctgtgcccga ctgctgagca
     3301 gcatctggcc aagtgctctg tagagttggc gtcccttcta gttgcagacc agatccccat
     3361 cttagggccc ccaacacagc acaggctgga tcgaggacac gctcgaaggc ttctgcatat
     3421 gctgctttcc ttgtggaagg atgacttcca ggggccagtt ccattgcagc ttctactcag
     3481 cccaagaaat gtagggcttc tggctgatac tcggccaaga gagtgggacc tgctactgtt
     3541 cttactccgg gagctggtag aaaaggatct catggggcat ttggaaatag aagcctgctt
     3601 agtcagcctt aatgaagccc agtggccagg ggacttctca gaagaattgt caacactatt
     3661 tcgcttgttc ctagctgagc cccatctgct agaaccccag ctgagagctt gtgaacttat
     3721 gcaaccaaat cgagggacag tgctagccca aagctagggc tgggaagcag ccctcttggg
     3781 caagtcacca gaacctgcct cctgagcctc aggaggaggc tcaagaaccc actgcacgcc
     3841 ctgctggggc aagagtgtcc aggtgtgtaa tcgggcttgc tgctctgctc ctaagtgaag
     3901 gaagtgtgtt gcttcaagca tccagatgca ggcctcaaca cctgagatct agaggaagga
     3961 gaacctgatt cagagtcaca gtggaaaagc ccagagactc taaccttgga gcaaaagggc
     4021 tagcatttct aatccagatg ctaaaagaaa tgcgtgtgct gatcaatgtt atttcgagcc
     4081 tcaagttgct gctatcccag catctcttga aactttgtgg ttctgagaaa tcttaatagg
     4141 caaagaactt ctgcttatga gaacattgac aaaacatttt cttgagtcca gaagctggac
     4201 tgtcacccct acccccaaat attggcagcc aataaggtag gaatcaccta agtggaactt
     4261 ggtctcatat ggaccttcgc ctctttgcag ggagttagtc agactaagcc tggtatagaa
     4321 aatttaaggg gcttgggttt gttttttttt tttttttttt tttttaaata aaatttctaa
     4381 caaggtcttg atggctattc tcccctctga agtgggcttt gtgcattgca gtgtgtgctt
     4441 cttcacggtg tctgcattct gtcagtctga gagacacaat ctgctactct ccatgtgctc
     4501 cctgctgtct atgccgaccc acatggcagg tagctttggt gatatttgta ctgtaggcac
     4561 tgggatgtct gatttaactc aaaacttctg accaaaagca gtcttctggg ttatagttag
     4621 caagacctca tttctataaa tggggtgacg tttttattat actcagagtg tctgcactca
     4681 agtgctatgg cgcacttctg gaagttgaag gacaacttgc tggagtcagt tctcatttta
     4741 ccatgtggat ccagggctca aattcaggtc actgggctta gccttcagct attttgacag
     4801 cccctgtaac cagctgattt ttaagggggt tttgttttgt ttatcaacac agggtttctc
     4861 tttgtaaccc tggctgtcct ggaactcact ctatatacca ggattgcctt aaactcatag
     4921 agctctgcct gcctctacct tccaagttct gggattgaag gcatgtgccc aaagatgaca
     4981 gtattttgaa aatgtgatat atccctgtaa aactattttt ctgtttgttt gttttggtag
     5041 taagcctcag gctttagtgg aaggatcaga atgtgctcag taatgactcc tgaagttaac
     5101 tgcaaaatct tttcagctgg caaaatggtt tttgacctga ggaaagttaa gtttctctaa
     5161 acttacactc cagtgctatt taa
//
