LOCUS       NM_001100804             686 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus CD99 molecule (Xg blood group) (Cd99), mRNA.
ACCESSION   NM_001100804 XM_001061998
VERSION     NM_001100804.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 686)
  AUTHORS   Kuo,J.C., Han,X., Hsiao,C.T., Yates,J.R. 3rd and Waterman,C.M.
  TITLE     Analysis of the myosin-II-responsive focal adhesion proteome
            reveals a role for beta-Pix in negative regulation of focal
            adhesion maturation
  JOURNAL   Nat Cell Biol 13 (4), 383-393 (2011)
   PUBMED   21423176
REFERENCE   2  (bases 1 to 686)
  AUTHORS   Bixel,M.G., Petri,B., Khandoga,A.G., Khandoga,A.,
            Wolburg-Buchholz,K., Wolburg,H., Marz,S., Krombach,F. and
            Vestweber,D.
  TITLE     A CD99-related antigen on endothelial cells mediates neutrophil but
            not lymphocyte extravasation in vivo
  JOURNAL   Blood 109 (12), 5327-5336 (2007)
   PUBMED   17344467
REFERENCE   3  (bases 1 to 686)
  AUTHORS   Park,S.H., Shin,Y.K., Suh,Y.H., Park,W.S., Ban,Y.L., Choi,H.S.,
            Park,H.J. and Jung,K.C.
  TITLE     Rapid divergency of rodent CD99 orthologs: implications for the
            evolution of the pseudoautosomal region
  JOURNAL   Gene 353 (2), 177-188 (2005)
   PUBMED   15978751
REFERENCE   4  (bases 1 to 686)
  AUTHORS   Shiratori,I., Ogasawara,K., Saito,T., Lanier,L.L. and Arase,H.
  TITLE     Activation of natural killer cells and dendritic cells upon
            recognition of a novel CD99-like ligand by paired
            immunoglobulin-like type 2 receptor
  JOURNAL   J Exp Med 199 (4), 525-533 (2004)
   PUBMED   14970179
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC168196.1 and AY262357.1.
            
            On Sep 5, 2008 this sequence version replaced XM_001061998.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC168196.1, CK469078.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132267, SAMD00132268
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-621               BC168196.1         1-621
            622-686             AY262357.1         611-675
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="Sprague-Dawley"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /map="20q13"
     gene            1..686
                     /gene="Cd99"
                     /note="CD99 molecule (Xg blood group)"
                     /db_xref="GeneID:652929"
                     /db_xref="RGD:1594332"
     exon            1..81
                     /gene="Cd99"
                     /inference="alignment:Splign:2.1.0"
     CDS             12..509
                     /gene="Cd99"
                     /note="CD99 antigen"
                     /codon_start=1
                     /product="CD99 antigen precursor"
                     /protein_id="NP_001094274.1"
                     /db_xref="GeneID:652929"
                     /db_xref="RGD:1594332"
                     /translation="MARAAGITAAITLALLGVLALGAGDGDFRLDDALEDTDKKPTPK
                     PPTPKKPSSGDFDLEEALTGGADEDPRRPGSRPKPDPKPPGPPRDSGGISDRDLEDVA
                     GHGGRGGGAGDRGTDGAESEGQPQGLIPGVVAAVLAALAGAVSSFVAYQKRRLCFREG
                     GSAPV"
     exon            82..117
                     /gene="Cd99"
                     /inference="alignment:Splign:2.1.0"
     exon            118..171
                     /gene="Cd99"
                     /inference="alignment:Splign:2.1.0"
     exon            172..204
                     /gene="Cd99"
                     /inference="alignment:Splign:2.1.0"
     exon            205..282
                     /gene="Cd99"
                     /inference="alignment:Splign:2.1.0"
     exon            283..333
                     /gene="Cd99"
                     /inference="alignment:Splign:2.1.0"
     exon            334..378
                     /gene="Cd99"
                     /inference="alignment:Splign:2.1.0"
     exon            379..492
                     /gene="Cd99"
                     /inference="alignment:Splign:2.1.0"
     exon            493..658
                     /gene="Cd99"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctcactcaga catggcgcgc gcggcgggaa tcacagcggc gataaccttg gcgctactcg
       61 gggtcctggc gctcggcgca ggtgatggtg acttcagact ggacgatgcc ctggaggaca
      121 ctgacaagaa gccaacgccc aagcccccga cacccaagaa gccatcctca ggagactttg
      181 acctggagga ggcactgact ggcggtgctg atgaggatcc ccggaggcca ggaagccggc
      241 ccaagcctga tccgaagcca cctgggccac ccagagactc aggaggaatc tctgaccgag
      301 acctggagga tgtggctgga catgggggac gaggaggcgg agcgggggac cgcggtactg
      361 atggggcgga gtcggaaggc cagccccagg gcctaatccc aggtgtggtc gctgcagtcc
      421 tggcggcgct cgcgggggct gtgtccagct ttgtagccta tcagaagcgg cgcctgtgct
      481 ttcgggaagg cggctccgcc cccgtctagg ctgactgacc tgcgacccag atgacatcgc
      541 ctggaccccg gccccgcccc ccaggtccca gaatccacgc gggtcgcctg tagagggcag
      601 ggtcgggccg gagggtgggg cggggccggg gatcagaata aaccagttct gcccttgaaa
      661 aaaaaaaaaa aaaaaaaaaa aaaaaa
//
