LOCUS       NM_053018               1162 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus CD9 molecule (Cd9), mRNA.
ACCESSION   NM_053018 XM_001063955
VERSION     NM_053018.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1162)
  AUTHORS   Horiguchi,K., Tsutsui,Y., Fujiwara,K., Tsukada,T., Nakakura,T.,
            Yoshida,S., Hasegawa,R. and Takigami,S.
  TITLE     Fluctuation of CD9/SOX2-positive cell populations during the
            turnover of GH- and TSH-producing cells in the adult anterior
            pituitary gland
  JOURNAL   J Reprod Dev 69 (6), 308-316 (2023)
   PUBMED   37778977
  REMARK    GeneRIF: Fluctuation of CD9/SOX2-positive cell populations during
            the turnover of GH- and TSH-producing cells in the adult anterior
            pituitary gland.
REFERENCE   2  (bases 1 to 1162)
  AUTHORS   Horiguchi,K., Fujiwara,K., Tsukada,T., Nakakura,T., Yoshida,S.,
            Hasegawa,R., Takigami,S. and Ohsako,S.
  TITLE     CD9-positive cells in the intermediate lobe migrate into the
            anterior lobe to supply endocrine cells
  JOURNAL   Histochem Cell Biol 156 (4), 301-313 (2021)
   PUBMED   34185148
  REMARK    GeneRIF: CD9-positive cells in the intermediate lobe migrate into
            the anterior lobe to supply endocrine cells.
REFERENCE   3  (bases 1 to 1162)
  AUTHORS   Horiguchi,K., Yoshida,S., Tsukada,T., Nakakura,T., Fujiwara,K.,
            Hasegawa,R., Takigami,S. and Ohsako,S.
  TITLE     Expression and functions of cluster of differentiation 9 and 81 in
            rat mammary epithelial cells
  JOURNAL   J Reprod Dev 66 (6), 515-522 (2020)
   PUBMED   32830152
  REMARK    GeneRIF: Expression and functions of cluster of differentiation 9
            and 81 in rat mammary epithelial cells.
REFERENCE   4  (bases 1 to 1162)
  AUTHORS   Yu,J., Lee,C.Y., Changou,C.A., Cedano-Prieto,D.M., Takada,Y.K. and
            Takada,Y.
  TITLE     The CD9, CD81, and CD151 EC2 domains bind to the classical
            RGD-binding site of integrin alphavbeta3
  JOURNAL   Biochem J 474 (4), 589-596 (2017)
   PUBMED   27993971
REFERENCE   5  (bases 1 to 1162)
  AUTHORS   Jeibmann,A., Halama,K., Witte,H.T., Kim,S.N., Eikmeier,K., Koos,B.,
            Klambt,C. and Paulus,W.
  TITLE     Involvement of CD9 and PDGFR in migration is evolutionarily
            conserved from Drosophila glia to human glioma
  JOURNAL   J Neurooncol 124 (3), 373-383 (2015)
   PUBMED   26224160
REFERENCE   6  (bases 1 to 1162)
  AUTHORS   Deissler,H., Blass-Kampmann,S., Kindler-Rohrborn,A., Meyer,H.E. and
            Rajewsky,M.F.
  TITLE     Characterization of rat NCA/CD9 cell surface antigen and its
            expression by normal and malignant neural cells
  JOURNAL   J Neurosci Res 43 (6), 664-674 (1996)
   PUBMED   8984196
REFERENCE   7  (bases 1 to 1162)
  AUTHORS   Youn,B.S., Jang,I.K., Broxmeyer,H.E., Cooper,S., Jenkins,N.A.,
            Gilbert,D.J., Copeland,N.G., Elick,T.A., Fraser,M.J. Jr. and
            Kwon,B.S.
  TITLE     A novel chemokine, macrophage inflammatory protein-related
            protein-2, inhibits colony formation of bone marrow myeloid
            progenitors
  JOURNAL   J Immunol 155 (5), 2661-2667 (1995)
   PUBMED   7650394
REFERENCE   8  (bases 1 to 1162)
  AUTHORS   Kaprielian,Z., Cho,K.O., Hadjiargyrou,M. and Patterson,P.H.
  TITLE     CD9, a major platelet cell surface glycoprotein, is a ROCA antigen
            and is expressed in the nervous system
  JOURNAL   J Neurosci 15 (1 Pt 2), 562-573 (1995)
   PUBMED   7823164
REFERENCE   9  (bases 1 to 1162)
  AUTHORS   Masellis-Smith,A. and Shaw,A.R.
  TITLE     CD9-regulated adhesion. Anti-CD9 monoclonal antibody induce pre-B
            cell adhesion to bone marrow fibroblasts through de novo
            recognition of fibronectin
  JOURNAL   J Immunol 152 (6), 2768-2777 (1994)
   PUBMED   7511626
REFERENCE   10 (bases 1 to 1162)
  AUTHORS   Ikeyama,S., Koyama,M., Yamaoko,M., Sasada,R. and Miyake,M.
  TITLE     Suppression of cell motility and metastasis by transfection with
            human motility-related protein (MRP-1/CD9) DNA
  JOURNAL   J Exp Med 177 (5), 1231-1237 (1993)
   PUBMED   8478605
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CF111078.1, X76489.1, BG670145.1 and BQ202980.1.
            
            On May 24, 2007 this sequence version replaced XM_001063955.1.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CF111078.1, FQ220476.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN11044071, SAMN12840115
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-61                CF111078.1         10-70
            62-739              X76489.1           1-678
            740-787             BG670145.1         332-379
            788-1162            BQ202980.1         1-375               c
FEATURES             Location/Qualifiers
     source          1..1162
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="Sprague-Dawley"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q42"
     gene            1..1162
                     /gene="Cd9"
                     /note="CD9 molecule"
                     /db_xref="GeneID:24936"
                     /db_xref="RGD:2318"
     exon            1..127
                     /gene="Cd9"
                     /inference="alignment:Splign:2.1.0"
     CDS             62..742
                     /gene="Cd9"
                     /note="CD9 antigen (p24)"
                     /codon_start=1
                     /product="CD9 antigen"
                     /protein_id="NP_444177.1"
                     /db_xref="GeneID:24936"
                     /db_xref="RGD:2318"
                     /translation="MPVKGGSKCIKYLLFGFNFIFWLAGIAVLAIGLWLRFDSQTKSI
                     FEQETNHSSFYTGVYILIGAGALMMLVGFLGCCGAVQESQCMLGLFFGFLLVIFAIEI
                     AAAVWGYTHKDEVIKELQEFYKDTYQKLRNKDEPQRETLKAIHMALNCCGIAGGVEQF
                     ISDICPKKQVLESFQVKSCPDAIDEVFHSKFHIIGAVGIGIAVVMIFGMIFSMILCCA
                     IRRSREMV"
     exon            128..230
                     /gene="Cd9"
                     /inference="alignment:Splign:2.1.0"
     exon            231..328
                     /gene="Cd9"
                     /inference="alignment:Splign:2.1.0"
     exon            329..403
                     /gene="Cd9"
                     /inference="alignment:Splign:2.1.0"
     exon            404..502
                     /gene="Cd9"
                     /inference="alignment:Splign:2.1.0"
     exon            503..592
                     /gene="Cd9"
                     /inference="alignment:Splign:2.1.0"
     exon            593..676
                     /gene="Cd9"
                     /inference="alignment:Splign:2.1.0"
     exon            677..1145
                     /gene="Cd9"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtcgagttcc ttcggtcccg gtcgtgcgtg cctcttgtcc cacgcaagtc cagcttgtac
       61 catgccggtc aaaggaggta gcaagtgcat caaatacctg ctctttggat ttaacttcat
      121 cttctggctc gccggcatcg cagtgcttgc cattggacta tggctgcggt tcgactctca
      181 gaccaagagc atcttcgagc aagaaactaa tcattccagc ttctacacag gagtgtacat
      241 tctgattgga gctggggccc tcatgatgct agttggtttc ctgggctgct gtggagctgt
      301 acaagagtca cagtgcatgc tgggattgtt cttcggattc ctcttggtga tattcgccat
      361 tgagatcgcc gcagccgtct ggggctatac ccacaaggac gaggtgatta aagaactcca
      421 ggagttttac aaggacacct accaaaagtt aaggaacaag gatgagcccc agcgggaaac
      481 actcaaagcc atccatatgg cgttgaactg ctgtggcata gctggtggtg tggagcagtt
      541 tatctcggac atctgcccca aaaagcaggt tctggaatcc ttccaggtta agtcctgccc
      601 ggatgccatc gatgaggtct tccacagcaa gttccacatc attggagcag tgggcatcgg
      661 tatcgccgtg gtgatgatct tcggtatgat tttcagcatg attctgtgct gcgccatccg
      721 caggagccga gaaatggtct agagtctgac ccaaccccga gcaggaacag tggctctgag
      781 gacagtcggg ccatttgttt tttttgccac taatattagt attcattacg catttctaaa
      841 caacagttat tctgtgtttg tctttttaat gctttattca ttattgacat ttgtagtaga
      901 gggatccggg ggttcggttc attttgattt tttttttttt ggttgtttat ttttgcttgt
      961 tatgttaagc aaaaaatcct gcaatgaaag gtactgtatt tgccagactc tagacataag
     1021 atgttgtaca taaagagaat ttttttgcct ttaaatagat aaaagtatct atcagataaa
     1081 atcaggttgt aagttatatt gaagacaatt tgatacataa taaaagatta taacaatgtc
     1141 tagtaaaaaa aaaaaaaaaa aa
//
