LOCUS       XM_039090321            1476 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus Cd48 molecule (Cd48), transcript
            variant X2, mRNA.
ACCESSION   XM_039090321
VERSION     XM_039090321.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051348.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1476
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1476
                     /gene="Cd48"
                     /gene_synonym="SLAMF2"
                     /note="Cd48 molecule; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 mRNA, 33 ESTs, 7 long
                     SRA reads, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 108 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:245962"
                     /db_xref="RGD:620620"
     CDS             409..810
                     /gene="Cd48"
                     /gene_synonym="SLAMF2"
                     /codon_start=1
                     /product="CD48 antigen isoform X1"
                     /protein_id="XP_038946249.1"
                     /db_xref="GeneID:245962"
                     /db_xref="RGD:620620"
                     /translation="MRMLHETEDQWKITMEVYDLVSKPAIKIEKTKNLTDSCHLRLSC
                     KVEDQGVDYTWYEDSGPFPQRNPGYVLEITITPHNKSTFYTCQVSNPVSSENDTLYFI
                     PPCTLARSSGVHWIAAWLVVTLSIIPSILLA"
ORIGIN      
        1 ccagcccagg gacagcacca ctcacaatgg gcaggaccct tcttccttga tcaccagctg
       61 agaaaatgcc ttacagctgg atctcacgga tgaatttcct caagggaggc tcctttctct
      121 gtgataactc cagcttgtgt caggttgaca cacagaacca atcaatcagt accaaatgta
      181 aatgccataa ccggcagcaa cgtaaccctg acaatcctga agcacccact tgcatcgtat
      241 caacgtctca cctggcttca tactaccaac cagaagattt tagagtactt ccctaatggt
      301 aaaaaaactg tcttcgagtc tgtatttaaa gacagggtcg atcttgacaa aacaaatggt
      361 gcacttcgta tctataatgt ctcgaaagag gacagaggtg actactacat gagaatgttg
      421 cacgaaactg aggaccagtg gaagataacc atggaagtat acgatcttgt gtccaagcct
      481 gccatcaaaa tcgagaagac taaaaatttg actgactcct gtcacctgag gctatcatgt
      541 aaggtagagg accaaggtgt tgactatact tggtatgagg actcggggcc ctttccccaa
      601 aggaatccag gatatgtact cgaaatcacc atcactccac acaacaagtc tacattttac
      661 acctgccaag tcagcaatcc tgtaagcagc gagaacgaca cactgtactt tattccacct
      721 tgtacgctgg ccagatcttc tggagtccat tggattgcag cttggctagt ggtcacgtta
      781 tccatcattc ccagcatcct gctagcctga caagatctct cctcagtcaa gaaggaaaca
      841 tcaaagccgt atcttgcctt catcccctgc actgctccta accattgacg ctgctctggc
      901 tccgtggagc aaaggaaagt gtgttattgt tatctgtgct ggtttgaatg catgctctat
      961 ggagtaagca caggacctag tacagtgcta catcactgat ctttacaaag attctaagct
     1021 aattttttaa aaactggggg tagcatctaa ttttatatac cctagttgtt tcctaacatt
     1081 cattgaagat aaatgcattc cttttaccaa aatatgtggc tatcttatac taatgttgtt
     1141 tatatcactc tttttttata aagataaatg cattccttta ccaaaatatg tgactatatc
     1201 atgctaatgt tgtttatatc actccttttt gtgaagataa atgcattcct tttaccaaaa
     1261 tatgtgacta tgtcatgcta atgttgttta tatcactctt ttttataaag ataaatgcat
     1321 tccttttacc aaaaacatgt ggctatatta tactaatgtt gtttatatca ctctttttta
     1381 taaagataaa tgcattcctt ctaccaaaat atgtgactat atcatgctaa tgttgtttat
     1441 atcacctttt taaaaataaa atcttttcac atacta
//
